BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35860.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1 1437 0.0
Ahg905806 jgi|Araly1|905806|Al_scaffold_0003_2934 641 0.0
> Ahg491053 jgi|Araly1|491053|fgenesh2_kg.7__486__AT4G35860.1
Length=1045
Score = 1437 bits (778), Expect = 0.0
Identities = 877/922 (95%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 59 AGATAGCTTCTTCATCGAGAAACCTCGAAATCAAAAAGCACGTCGGTGACTTGTActctt 118
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AGATAGCTTCTTCATCGAGAAACCTCGAAATCAAAAAGCGCGTCGGTGACTTGTACTCTT 60
Query 119 caatctcttcttcctctctttcacatctc-c-ttctctcGAACCCATCGACC-TGCGCT- 174
|||||||||||||||||| ||| | |||| | | | ||||||||||||||| ||| |
Sbjct 61 CAATCTCTTCTTCCTCTCCTTCTC-TCTCGCAAT-TATCGAACCCATCGACCTTGC-TTA 117
Query 175 AATTCATCATCGACCTTGCTCAAATTCA-T--CAACCATGTCTTACGATTATCTCTTCAA 231
|||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 118 AATTCATCATCGACCTTGCTCAAATTCATTAGCCACCATGTCGTACGATTATCTCTTCAA 177
Query 232 GTACATAATCATCGGAGACACAGGTGTGGGAAAATCGTGTCTGCTTCTGCAATTTACTGA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTACATAATCATCGGAGACACAGGTGTGGGAAAATCGTGTCTGCTTCTGCAATTTACTGA 237
Query 292 TAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGTGTTGAGTTCGGTGCTCGGATGGT 351
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 238 CAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGTGTCGAGTTCGGTGCTCGGATGGT 297
Query 352 CACCGTCGATGGACGCCCCATCAAACTCCAAATTTGGGACACCGCTGGACAAGAATCTTT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 TACCGTCGATGGACGCCCCATCAAACTCCAAATTTGGGACACCGCTGGACAAGAGTCTTT 357
Query 412 TAGATCCATCACCAGATCATACTACAGAGGAGCAGCCGGAGCTTTACTGGTTTATGACAT 471
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 358 TAGATCCATCACCAGATCATACTACAGAGGAGCAGCTGGAGCTTTGCTGGTTTATGACAT 417
Query 472 CACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTGGTTGGAGGATGCTCGGCAACATGC 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 CACCAGGAGAGAGACGTTTAACCATCTGGCGAGCTGGTTGGAGGATGCTCGGCAACATGC 477
Query 532 AAATCCTAACATGAGTATTATGCTGATTGGGAACAAATGTGATCTTGCTCACAAGAGAGC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAATCCTAACATGAGTATTATGCTGATTGGGAACAAATGTGATCTTGCTCACAAGAGAGC 537
Query 592 TGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAAAGAACATGGCCTGCTATTCTTAGAAGC 651
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGTTAGCAAAGAGGAAGGAGAACAGTTTGCCAAAGAACATGGCCTGCTATTCTTAGAAGC 597
Query 652 ATCTGCAAGAACTGCTCAAAACGTTGAGGAGGCCTTCATAGAGACTGCTGCCAAGATCCT 711
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 598 ATCTGCAAGAACAGCTCAAAACGTTGAGGAGGCATTCATAAAGACTGCTGCCAAGATCCT 657
Query 712 CCAGAACATTCAGGATGGTGTCTTTGATGTATCCAACGAGTCATCAGGTATCAAGATTGG 771
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 658 CCAGAACATTCAGGATGGTGTCTTTGATGTATCCAACGAGTCGTCAGGCATCAAGGTTGG 717
Query 772 TTACGGGCGTACTCAAGGTGCAGCTGGAGGAAGAGATGGTACGATCTCTCAGGGAGGTGG 831
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 TTACGGGCGCACTCAAGGTGCAGCTGGAGGAAGAGATGGTACGATCTCTCAGGGAGGAGG 777
Query 832 CTGTTGTGGTTAAAAAATCCTCGAGAGAGG-T----GTC--ACATATCTGCTGTAATCTG 884
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 778 CTGTTGTGGTTAAAAAATCCTCGAGAGAGGGTCACAGTCTCACATATCTGCTGTAATCTG 837
Query 885 GTGATTCAGAAACTACTATTGCTTCTATTTACCTCTGCAAATGGATACACCAGAATGTAT 944
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 GTGATTCAGAAACTACTATTGCTTTTATTTACCTCTGCAAATGGATACACCAGAATGTAT 897
Query 945 AGtttctctttctttctttctt 966
||||||||||| ||| ||||||
Sbjct 898 AGTTTCTCTTTTTTTTTTTCTT 919
Score = 178 bits (96), Expect = 8e-44
Identities = 121/133 (91%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 991 TTTTATCAAAAAACCAAACGGGTGCATTTAAGAGTGAACAGGCTGATCTTTATAAACCAA 1050
|||| | ||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 913 TTTTCTTAAAAACCCAAACCGGTGCATTTGAGAGTGAACAGCCTGATCTTTATAAACCAA 972
Query 1051 ACAGGCGTTGGCTTATTTAAAACGTTGTCGCTTT-GTATGAAGCTCTCAAGGTTAAGTAA 1109
||||||||||||||||||||||| |||| ||||| | ||||||||||||| |||||| ||
Sbjct 973 ACAGGCGTTGGCTTATTTAAAACATTGTTGCTTTTGCATGAAGCTCTCAACGTTAAGCAA 1032
Query 1110 TTGAAATCAAATC 1122
|||||||||||||
Sbjct 1033 TTGAAATCAAATC 1045
> Ahg905806 jgi|Araly1|905806|Al_scaffold_0003_2934
Length=639
Score = 641 bits (347), Expect = 0.0
Identities = 543/639 (85%), Gaps = 7/639 (1%)
Strand=Plus/Plus
Query 209 ATGTCTTACGATTATCTCTTCAAGTACATAATCATCGGAGACACAGGTGTGGGAAAATCG 268
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTCATACGACTATCTGTTCAAATACATAATCATCGGAGACACAGGTGTGGGAAAAACG 60
Query 269 TGTCTGCTTCTGCAATTTACTGATAAGAGGTTCCAACCAGTCCACGATCTCACCATTGGT 328
|| || ||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 61 TGCCTTCTTCTACAATTTACTGACAAGAGATTCCAACCAGTCCACGATCTAACCATTGGT 120
Query 329 GTTGAGTTCGGTGCTCGGATGGTCACCGTCGATGGACGCCCCATCAAACTCCAAATTTGG 388
| | |||||||| ||| ||||||||||||||||| || | || ||||| |||||||||
Sbjct 121 GCCGGGTTCGGTGATCGAATGGTCACCGTCGATGGTCGGTCTATAAAACTTCAAATTTGG 180
Query 389 GACACCGCTGGACAAGA-ATCTTTTAGATCCATCACCAGATCATACTACAGAGGAGCAGC 447
||||||||||||||||| | | |||||||||||||||||||||| || |||||||| ||
Sbjct 181 GACACCGCTGGACAAGAGA-CATTTAGATCCATCACCAGATCATTTTATAGAGGAGCCGC 239
Query 448 CGGAGCTTTACTGGTTTATGACATCACCAGGAGAGAGACGTTTAACCATCTGGCAAGCTG 507
|||||| ||||||||||| ||||||| |||||||||||||||||||||| |||| || ||
Sbjct 240 CGGAGCGTTACTGGTTTACGACATCAGCAGGAGAGAGACGTTTAACCATGTGGCGAGTTG 299
Query 508 GTTGGAGGATGCTCGGCAACATGCAAAT-C-C-TAACATGAGTATTATGCTGATTGGGAA 564
||||||||||| |||||| |||| | | | | |||||||||||| || || || || ||
Sbjct 300 GTTGGAGGATGTTCGGCATTATGCCAGTACTCATAACATGAGTATCATTCTTATCGGAAA 359
Query 565 CAAATGTGATCTTGCTCACAAGAGAGCTGTTAGCAAAGAGGAAGGTCAACAGTTTGCCAA 624
|||||| | ||||| || |||||||||| |||| ||||||||||| || ||||||||||
Sbjct 360 CAAATGCGTTCTTGTTCGCAAGAGAGCTATTAGTAAAGAGGAAGGAGAAGAGTTTGCCAA 419
Query 625 AGAACATGGCCTGCTATTCTTAGAAGCATCTGCAAGAAC-TGCTCAAAACGTTGAGGAGG 683
| |||||||||| | || || ||| | ||||||||||| | ||||||||||||||||||
Sbjct 420 ACAACATGGCCTTTTGTTTTTGGAAACGTCTGCAAGAACAT-CTCAAAACGTTGAGGAGG 478
Query 684 CCTTCATAGAGACTGCTGCCAAGATCCTCCAGAACATTCAGGATGGTGTCTTTGATGTAT 743
| |||||| |||||||||| || || ||| | || ||| || | ||||||||||||||||
Sbjct 479 CTTTCATAAAGACTGCTGCGAATATTCTCGAAAAGATTGAGAACGGTGTCTTTGATGTAT 538
Query 744 CCAACGAGTCATCAGGTATCAAGATTGGTTACGGGCGTACTCAAGGTGCAGCTGGAGGAA 803
|||| |||||| | || |||||| |||| || | | |||| |||| |||||||||||
Sbjct 539 CCAATGAGTCACCCGGGATCAAGGTTGGATATTCACATCCTCATGGTGAAGCTGGAGGAA 598
Query 804 GAGATGGTACGATCTCTCAGGGAGGTGGCTGTTGTGGTT 842
|| ||||||| ||||| ||||| ||||||||||||||||
Sbjct 599 GATATGGTACCATCTCCCAGGGTGGTGGCTGTTGTGGTT 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5