BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35870.1
Length=2716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491051 jgi|Araly1|491051|fgenesh2_kg.7__484__AT4G35870.1 4318 0.0
> Ahg491051 jgi|Araly1|491051|fgenesh2_kg.7__484__AT4G35870.1
Length=2685
Score = 4318 bits (2338), Expect = 0.0
Identities = 2552/2655 (96%), Gaps = 15/2655 (1%)
Strand=Plus/Plus
Query 11 TTTTGCCATCATCTTCGTCGATCTACTTCCCCCAAAGTCTAACCCTAAAGCCCCCAAATT 70
|||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1 TTTTTCCATCATCTTCGTCGATCTACTT-CCCCAAAATCTAACCCTAAAGCCCCCAAATT 59
Query 71 TCTCCTGATC--AA-AACCTTGTTGTATAAATCCTGAATCTCTGAAGAAACTTCGAAGAT 127
|||| ||||| || || | | ||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TCTCGTGATCATAATAAGC-T-TTGTATAAATCCTGAATCTCTGAAGAAACTTTGAAGAT 117
Query 128 TTGGGTTTCTCAATTTGGTTGAGAAATTCGCGATGAATCGCAATTTTTCACCAGCTGCGA 187
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 118 TTGGGTTTCTCAATTTGGTTGAGAAATTCACGATGCATCGCAATTTTTCACCAGCTGCGA 177
Query 188 TGCCACCGATTTCATCAATGACAATAGATAATTCATTCTCTCCTCCTCCATCTTCCGGCG 247
||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 178 TGCCACCGATTTCATCAATGACAATGGATGATTCATTCTCTCCTCCCCCATCTTCCGGCG 237
Query 248 ACTTACCTGAAAT-CCCAGATGCTTGGTACGGCAACATTCAGTATCTGCTTAATATCTCG 306
||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 ACTTACCGGAAATACCC-GATGCTTGGTACGGTAACATTCAGTATCTGCTTAATATCTCG 296
Query 307 GTCATTGGTCTCTTATGCTGCGTCTCCATCTTT-CTCTTCGTTAAGCTACGCAGCGACCA 365
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 297 GTCATTGGTCTCTTATGCTGCGTCTCCAT-TTTCCTCTTCGTTAAGCTACGCAGCGACCA 355
Query 366 CCGTCGTATGCCTGGTCCTTCTGCTCTCTTCTCTAAGCTCCTCGCCGTTTGGAAAGCCAC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCGTCGTATGCCTGGTCCTTCTGCTCTCTTCTCTAAGCTCCTCGCCGTTTGGAAAGCCAC 415
Query 426 GTGTCGCGAGATCGCTCGTCACTGTGGTGCTGATGCTGCTCAGTTTCTTTTAATTGAAGG 485
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 416 GTGTCGTGAGATCGCTCGTCACTGTGGTGCTGATGCTGCTCAGTTTCTTTTAATCGAAGG 475
Query 486 TGGAAGCTTTGTGCTTCTTTTCTCCATTGCTGTTTTAGCTGTTTCGGTTATGCTTCCGTT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGGAAGCTTTGTGCTTCTTTTCTCCATTGCTGTTTTAGCTGTTTCGGTTATGCTTCCGTT 535
Query 546 GAATTTATATGCTGGGACTGCTTTGTTGAGTGATGAGCTTTCGAAAACGATGATTACGCA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 536 GAATTTATATGCTGGGACTGCTTTGTTGAGTGATGAGCTTTCGAAAACGATGATTACTCA 595
Query 606 TATTCAGAAAGGTTCAGCTTTGCTTTGGCTGCATTttgtgtttgttgttattgttgttgt 665
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TATTCAGAAAGGTTCAGCTCTGCTTTGGCTGCATTTTGTGTTTGTTGTTATTGTTGTTGT 655
Query 666 tATCTCGCATTTTGGAATCGCTGCTATTGAAGCTAGGTTGAAGTTTACTAGGTTTAGAGA 725
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 656 TATCTCGCATTTCGGAATTGCTGCCATTGAAGCTAGGTTGAAATTTACTAGGTTTAGAGA 715
Query 726 TGGGAATGGGAATATCAGTGACCCGAACGCGAATTCTACTGCTGTGTTTACTATAATGGT 785
||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||
Sbjct 716 TGGGAATGGGAATATAAGCGACCCCAATGCGAATTCTACTGCTGTGTTTACTATAATGGT 775
Query 786 GCAGGGTTTGCCTAAGAATTTAGGGTCTGATAGAGTTGAGTTTGAAGATTGCTTTAGGCT 845
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 GCAGGGTTTGCCTAAGAATTTAGGGTCTGATAGAGTTGAGTTTGAAGAGTGCTTTAGGCT 835
Query 846 GAAGTACCCTGGGAAAGTTTATAAGTTTATTGTTCCCATGGATTTGTGTGCTTTGGATGA 905
||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 836 GAAGTACCCGGGGAAAGTTTATAAGATTATTGTTCCCATGGATTTGTGTGCGTTGGATGA 895
Query 906 TCTTGCTACAGAGTTGGTTCGTGTTCGAGATGAGATTACTTGGTTAGTTGCCAAGATGGA 965
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 TCTTGCTACAGAGTTGGTTCGTGTTCGGGATGAGATTACTTGGTTAGTTGCCAAGATGGA 955
Query 966 CTCTAGGCTTCTACCGGATGAGTATGAGAATGTTGGAGATAACGGACTAGTGTTC-TGTG 1024
||||||||||||||||||||||| |||||||| |||||||||||||||| || || ||||
Sbjct 956 CTCTAGGCTTCTACCGGATGAGTTTGAGAATGCTGGAGATAACGGACTATTG-TCTTGTG 1014
Query 1025 TGTGTTCTTTGTGGGTTAGGGTGAAGGTTTTGTGGTCTCAGATTACAGAGAGGTTTGGAT 1084
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1015 TGTGTGCTTTGTGGATTAGGGTGAAGGTTTTGTGGTCTCAGGTTACAGAGAGGTTTGGTT 1074
Query 1085 TTACAGATGATGAAAAACTGAGGAAGCTGCAAGAACTGAGAGCTGATTTGGAGTCTCAGT 1144
||||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1075 TTACAGATGATGAGAAACTTAGGAAGCTGCAAGAATTGAGAGCTGATTTAGAGTCTCAGT 1134
Query 1145 TAGCAGCTTATAAAGAAGGACGAGCACAAGGCGCTGGGGTTGCTTTTGTGATGTTTAAGG 1204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 TAGCAGCTTATAAAGAAGGACGAGCACAAGGCGCTGGGGTTGCTTTTGTGATGTTTAAAG 1194
Query 1205 ATGTGTACACAGCTAATAAGGCTGTTCAGGATTTTCGAAACGAGAGATCAAGGCGTACTG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATGTGTACACAGCTAATAAGGCTGTTCAGGATTTTCGAAACGAGAGATCAAGGCGTACTG 1254
Query 1265 GAAAGTTCTTCTCTGTCACAGAGCTGCGATTACAGAGAAACCAGTGGAAAGTGGACAGAG 1324
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1255 GAAAGTTTTTCTCTGTCACAGAGCTGCGGTTACAGAGAAACCAGTGGAAAGTGGACAGAG 1314
Query 1325 CACCCTTGGCTACTGATATTTATTGGAATCATCTGGGATTGACAAAAGTTGCTCTTATTG 1384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1315 CACCCTTGGCTACTGATATTTATTGGAATCATCTGGGATTGACAAAAGTTGCTCTTATCG 1374
Query 1385 TGCGAAGAGTGATTGTTAATACTATTCTACTGTTGATTCTTGTGTTTTTCAGCTCCCCAT 1444
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1375 TGCGAAGAGTGATTGTTAATACTATTCTGCTATTGATTCTTGTGTTTTTCAGCTCCCCAT 1434
Query 1445 TGGCCTTGATCAGTGCATTGGTAAGTGCCGGGAGAATCTTCAATGCTGAAGCATTGGATA 1504
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1435 TGGCCTTGATTAGTGCATTGGTAAGTGCCGGGCGAATCTTCAATGCTGAAGCATTGGATA 1494
Query 1505 GTGCTCAGTATTGGCTCACTTGGGTGCAAACTTCTGGCTGGATTGGATCTCTGATTTTTC 1564
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1495 GTGCTCAGTCTTGGCTCGCTTGGGTGCAAACTTCTGGCTGGATTGGATCTTTGATTTTTC 1554
Query 1565 AGTTCCTGCCCAACGTCTTCATATTTGTTAGTATGTACATTGTAATCCCTTCTGCGCTCT 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 AGTTCCTGCCCAACGTCTTCATATTTGTTAGTATGTACATTGTAATCCCTTCTGCTCTCT 1614
Query 1625 CGTATCTTTCCAAGTTTGAGCGGCATCTAACAGTGTCTGGGGAACAAAGAGCAGCTCTCT 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CGTATCTTTCCAAGTTTGAGCGGCATCTAACAGTGTCTGGGGAACAAAGAGCAGCTCTCT 1674
Query 1685 TGAAGATGGTTTGCTTCTTCCTTGTGAACCTCATCATTCTCAAGGCTCTTGTGGAGTCGT 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TGAAGATGGTTTGCTTCTTCCTTGTGAACCTCATCATTCTCAAGGCTCTTGTGGAGTCGT 1734
Query 1745 CACTGGAAAGTGCACTCCTGAAAATGAGCCGTTGCTATTTAGATGGTGAGGATTGCAAGA 1804
| |||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 1735 CGCTGGAAAGCGCACTCTTGAAAATGAGTCGGTGCTATTTAGATGGTGAGGATTGCAAGA 1794
Query 1805 GGATTGAAGAATACATGAGCCCTTCCTTCTTATCAAGGTCATGCGTTTCAGCTCTAGCTT 1864
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1795 GGATTGAAGAATACATGAGCCCTTCCTTCTTATCAAGGTCATGCGTTTCGGCTCTAGCTT 1854
Query 1865 TTCTCATCACAAGCACGTTCCTAGGAATCTCCTTCGATCTACTCGCTCCAATCCCGTGGA 1924
|||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||
Sbjct 1855 TTCTCATCACAAGCACGTTCTTAGGAATCTCCTTTGATCTACTTGCTCCAATCCCGTGGA 1914
Query 1925 TCAAGAAGAAAATTCAAAAGTTCAGGAAGAATGACATGCTTCAGCTTGTCCCCGAGCAAA 1984
||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1915 TCAAGAAAAAAATCCAGAAGTTCAGGAAGAACGACATGCTTCAGCTTGTCCCCGAGCAAA 1974
Query 1985 ATGAAGAGTACGCTTTGGAAAATCAAGAGCCAAGCAGTAACCTTGAGACACCACTTCTCC 2044
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1975 ACGAAGAGTACGCTTTGGAAAATCAAGAGCCAAGCAGCAACCTTGAGACACCACTTCTCC 2034
Query 2045 CTGAAAACATGTTTGAGTCTCCAAGATTCGGGGACATAGAACCTATGAGCCAAGACCTCT 2104
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2035 CTGAAAACATGTTTGAGTCTCCAAGATTCGGGGACATCGAACCTATGAGCCAAGACCTCT 2094
Query 2105 CTGAATACCCAATCAGCCGAACCTCACCAATCCCTAAACAGAAATTCGACTTTGCCCAAT 2164
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2095 CTGAATACCCTATCAGCCGAACCTCACCAATCCCTAAACAAAAATTCGACTTTGCCCAAT 2154
Query 2165 ACTACGCCTTCAATCTCACCATCTTTGCCTTAACAATGATATACTCTTCATTCGCTCCAC 2224
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2155 ACTACGCCTTCAATCTCACCATCTTCGCCTTAACAATGATATACTCTTCATTCGCTCCAC 2214
Query 2225 TCGTGGTCCCTGTAGGCGCAGTTTACTTTGGTTACAGATACATTGTCGACAAATACAACT 2284
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 TCGTAGTCCCTGTAGGCGCAGTTTACTTTGGTTACAGATACATTGTCGACAAATACAACT 2274
Query 2285 TCCTTTACGTGTACAGAGTCCGTGGCTTCCCTGCAGGGAATGAAGGAAAGCTAATGGACA 2344
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2275 TCCTCTACGTGTACAGAGTCCGTGGCTTCCCTGCAGGCAATGAAGGAAAGCTAATGGACA 2334
Query 2345 CGGTTTTGTGTATCATGAGATTCTGTGTCGACCTGTACCTCGTCTCAATGCTGCTCTTCT 2404
||||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 2335 CGGTTCTGTGTATCATGCGGTTCTGTGTAGACCTGTACCTGGTCTCAATGCTGCTCTTCT 2394
Query 2405 TCTCAGTTAAAGGAGATTCCACAAAGCTTCAAGCCATATTCACACTTGGAGTGCTTGTGA 2464
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2395 TTTCAGTCAAAGGAGATTCCACAAAGCTTCAAGCCATATTCACACTTGGGGTGCTTGTGA 2454
Query 2465 TGTACAAGCTTTTGCCTTCGGATACAGACCGGTATCACCCAGCT-TTACTAAGAAGTATT 2523
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 2455 TGTACAAGCTTTTGCCTTCGGATACAGACCGGTATCACCCAGCTCTT-CTACGAAGTATT 2513
Query 2524 CAGACCGTCGATAGCATCATCGACGGACCTGTGGATTACGAAGCTTATTCTCACCCAAAC 2583
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2514 CAGACCGTCGATAGCATCATCGATGGACCTGTTGATTACGAAGCTTATTCTCACCCAAAC 2573
Query 2584 TTCGATTGGGACACTTACAACAACAGATGATTCTACGACCTTTTAAGTCTTACAAATTTT 2643
||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||
Sbjct 2574 TTCGATTGGGACACTTACAACAACAGATGATTCTACGACCTTT-AAGTCATATAAGTTTT 2632
Query 2644 GCTCTTTGACCAAAT 2658
|||||||||||||||
Sbjct 2633 GCTCTTTGACCAAAT 2647
Score = 63.9 bits (34), Expect = 6e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 2683 TCTTCTTTGTGTATATTCCATCTTTTGTGCAATT 2716
||||||||||||||||||||||||||||||||||
Sbjct 2652 TCTTCTTTGTGTATATTCCATCTTTTGTGCAATT 2685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102462759050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5