BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35880.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491050 jgi|Araly1|491050|fgenesh2_kg.7__483__AT4G35880.1 2695 0.0
> Ahg491050 jgi|Araly1|491050|fgenesh2_kg.7__483__AT4G35880.1
Length=1660
Score = 2695 bits (1459), Expect = 0.0
Identities = 1600/1668 (96%), Gaps = 10/1668 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTGCTGTTTCTTCAAGACTACTCTGTTCTTGATCCCGATTTTGATGTTACTGAGC 60
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTCGTACTGTTTCTTCAAGACTAGTCTGTTCTTGATCCCGATTTTGTTGTTACTGAGC 60
Query 61 TTCGGGAGCTGCAATGGTCGAATCTTCACCTTCGAGATGCACCATAGATTCTCCGACGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TTCGGGAGCTGCAATGGTCGAATCTTCACCTTCGAGATGCACCATAGATTCCCCGACGAA 120
Query 121 GTCAAGCAATGGTCCGATTCCACCGGGAGATTTGCTAAGTTTCCCCCTAAAGGAAGCTTC 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 GTCAAGCAATGGTCCGATTCAACCGGGAGATTTGTTAAGTTTCCCCCTAAGGGAAGCTTC 180
Query 181 GAATACTTCAACGCTCTCGTCCTCCGTGATTGGCTAATCCGTGGCCGTCGTCTCTCCGAG 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAATACTTCAACGCTCTCGTCCTTCGTGATTGGCTAATCCGTGGCCGTCGTCTCTCCGA- 239
Query 241 TCGGAATCGGAATCGGAGTCGTCGCTTACTTTCTCCGACGGCAATTCCACTTCTCGTATC 300
| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 240 -C----TCAGAATCGGAGTCCTCACTCACTTTCTCCGACGGCAATTCCACTTCTCGTATC 294
Query 301 AGCTCTCTCGGATTTTTGCATTACACGACGGTGAAATTGGGTACTCCGGGAATGAGATTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGCTCTCTCGGATTTTTGCATTACACGACGGTGAAATTGGGTACTCCGGGAATGAGATTC 354
Query 361 ATGGTGGCGCTTGATACAGGAAGCGACCTCTTTTGGGTCCCTTGTGATTGCGGCAAATGC 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 ATGGTGGCGCTTGATACAGGAAGCGACCTCTTTTGGGTTCCTTGTGATTGCGGCAAATGC 414
Query 421 GCACCAACCGAAGGAGCCACTTATGCTTCTGAGTTTGAACTCAGCATTTACAATCCTAAA 480
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 GCACCAACAGAAGGAGCCACTTATGCTTCTGAATTTGAACTCAGCATTTACAATCCTAAA 474
Query 481 GTTTCAACTACAAATAAGAAGGTCACCTGCAACAACAGTCTATGTGCACAGCGTAATCAG 540
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATTTCAACCACAAACAAGAAGGTCACCTGCAACAACAGTCTATGTGCACAGCGTAATCAA 534
Query 541 TGCCTTGGAACATTCAGCACTTGCCCTTATATGGTGTCTTATGTCTCTGCTCAGACTTCG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGCCTTGGAACATTCAGCACTTGCCCTTATATGGTGTCTTATGTCTCTGCTCAGACTTCC 594
Query 601 ACATCTGGTATTCTTATGGAAGATGTTATGCACTTAACAACAGAAGATAAGAATCCAGAG 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 595 ACATCTGGTATTCTTATGGAAGATGTTATGCACTTAACTACAGAAGATAAGAATCCAGAG 654
Query 661 CGTGTTGAGGCATATGTCACATTTGGATGTGGACAGGTTCAAAGTGGTTCTTTTCTTGAC 720
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 655 CGTGTTGAGGCATATGTCACATTTGGATGTGGACAGGTTCAAAGCGGTTCCTTTCTTGAC 714
Query 721 ATTGCAGCACCAAATGGTTTATTTGGTCTTGGCATGGAAAAGATATCGGTTCCAAGTGTT 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTGCGGCACCAAATGGTTTATTTGGTCTTGGCATGGAAAAGATATCGGTTCCAAGTGTT 774
Query 781 TTGGCGAGGGAAGGTCTGGTTGCTGATTCTTTCTCCATGTGTTTCGGTCATGATGGAGTT 840
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 TTGGCGAGGGAAGGTCTCGTTGCTGATTCTTTCTCCATGTGTTTCGGACATGATGGAGTT 834
Query 841 GGAAGGATCAGTTTTGGGGACAAGGGTAGTTCTGATCAGGAAGAGACACCGTTTAATCTC 900
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 835 GGAAGGATCAGTTTTGGGGACAAGGGTAGTTCTGATCAGGAAGAAACGCCGTTTAACCTG 894
Query 901 AATCCTTCACATCCAAACTACAACATCACGGTGACTCGGGTACGTGTGGGGACTACTTTA 960
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 AATCCTTCACACCCAAACTACAACATCACGGTGACTCGGGTTCGTGTGGGGACTACTTTA 954
Query 961 ATAGATGATGAGTTCACAGCTCTCTTTGACACCGGTACATCATTTACTTATTTGGTTGAT 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATAGACGATGAGTTCACAGCTCTCTTTGACACCGGTACATCATTTACTTATTTGGTTGAT 1014
Query 1021 CCAATGTATACGACAGTCTCTGAGAGTTTCCATTCTCAGGCCCAAGATAAGCGCCATTCA 1080
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CCGATGTATACGACAGTCTCTGAGAGTTTCCATTCTCAGGCCCAAGATAAGCGCCATTCA 1074
Query 1081 CCGGATTCAAGGATTCCATTTGAGTATTGTTATGACATGAGCAATGACGCGAATGCCAGT 1140
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 CCGGATTCAAGGATTCCATTCGAGTATTGTTATGACATGAGCAATGATGCGAATGCCAGT 1134
Query 1141 TTGATACCGAGTTTAAGCTTAACAATGAAAGGAAACAGTCACTTCACCATCAACGATCCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTGATACCGAGTTTAAGCTTAACAATGAAAGGAAACAGTCACTTCACCATCAACGATCCT 1194
Query 1201 ATAATCGTCATCTCTACTGAGGGCGAACTTGTATATTGCCTGGCCATTGTCAAAAGCTCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATAATCGTCATCTCTACTGAGGGCGAACTTGTATATTGCCTGGCCATTGTCAAAAGCTCT 1254
Query 1261 GAACTCAACATTATTGGGCAAAACTACATGACCGGGTATCGTGTAGTATTCGACAGGGAG 1320
||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1255 GAACTCAACATAATTGGACAAAACTACATGACCGGGTACCGTGTAGTGTTCGACAGAGAG 1314
Query 1321 AAACTCGTCTTAGCTTGGAAAAAGTTTGACTGTTATGATATCGAAGAGACAAACACAACT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AAACTCGTCTTAGCTTGGAAAAAGTTTGACTGTTATGATATCGAAGAGACAAACACAACT 1374
Query 1381 GTTGCCGGAACAAACAAAACAGCAGCGGTAGCTCCAGCAATGGCAGCTGGAATAAAGACT 1440
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1375 CTTGCTGGAACAAACAAAACAGCAGCCGTAGCTCCGGCAATGGCAGCCGGAATAAAGACT 1434
Query 1441 CATAACAATTCCTCAGAGCTACAcaaaacaaaccaaaccatctccaaaagtaactcctcc 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1435 CATAACAATTCCTCAGAGCTACACAAAACAAACCAAACCATCTCCAAAAGTAGCTCCTCG 1494
Query 1501 ccaaaccaaatatccaaaacAGTAGATG-TATGGTCTTTTTTCAGATTTGTGTTCATATT 1559
||||||||| || ||||||||| | | ||||||| |||||||||||||||||||||||
Sbjct 1495 TCAAACCAAAGATTTAAAACAGTAAA-GATATGGTCCTTTTTCAGATTTGTGTTCATATT 1553
Query 1560 ACTTCCACTTGTGTAGATTTGTAAGCCCCATCCAAAACACATGCCAATAGTAtttttttt 1619
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1554 ACTTCCACTTGTGTAGATTTGTAAGCCCCCTCCAAAACACAGGCCAATAGTATTTTTTT- 1612
Query 1620 GTATCATAACGACACTATAGGGATTTT-TTCAGGAAATATATGCTCTT 1666
|||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1613 GTATCATAACGAGACTATAGAGATTTTCTTCAGGAAATATATGCTCTT 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5