BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35890.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353240 jgi|Araly1|353240|fgenesh1_pg.C_scaffold_7000413 2202 0.0
> Ahg353240 jgi|Araly1|353240|fgenesh1_pg.C_scaffold_7000413
Length=1581
Score = 2202 bits (1192), Expect = 0.0
Identities = 1469/1597 (92%), Gaps = 41/1597 (3%)
Strand=Plus/Plus
Query 295 ATGGCTTCCGCCACTTCCAATAACCCTGCTTCTTCTTCTATGTCTCCTCGTCGTATCAGC 354
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTTCCGCCACTTCCAATAACTCTGCTTCTTCTTCTATGTCCCCTCGTCGTATCAGC 60
Query 355 GGGAATCACGGCAGCCCCACCGCTTCCGTAGCACAATCACCTCGCCGTCCTTCTCGGCAG 414
| ||||||||||||||| | |||| ||||| ||||||| |||||||||||||||||||||
Sbjct 61 GAGAATCACGGCAGCCCTATCGCTGCCGTATCACAATCGCCTCGCCGTCCTTCTCGGCAG 120
Query 415 GTTTCTTCTCCGTGGACTCAAATCGTCCGCGGCGAATCAGAGCCGATCGCCGCCGCCGCC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTCTTCTCCGTGGACTCAAATCGTCCGCGGCGAATCAGAGCCGATCGCCGCCGCCGCC 180
Query 475 GCTGTAGCCGGTCCTTCCTCTCCTCAATCCAGGGCTCCGATCGAGCCGATTGCTTCTGTA 534
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGCAGCTGGTCCTTCCTCTCCTCAATCCAGGGCTCCGATCGAGCCGATTGCTTCTGTA 240
Query 535 TCCGTTGCTGCTCCAACTGCTGCTGTTTTGACGGTGGAGGCGGCGGCTGGTGATGAGAAA 594
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TCCGTTGCTGCTCCACCTGCTTCTGTTTTGACGGTGGAGGCGGCGGCCGGTGATGAGAAA 300
Query 595 TCGGAAGCATCTGGTGGTCAGGACAATGCTGGAAAGAAACCAGTTTGGAAAAGGCCGTCT 654
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCGGAAGAATCTGGTGGTCAGGGCAATGCAGGAAAGAAACCAGTTTGGAAAAGGCCGTCT 360
Query 655 AATGGGGCTTCTGAGGTTGGACCTGTCATGGGAGCTTCTTCGTGGCCTGCTCTTTCTGAG 714
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AATGGGGCTTCTGAGGTTGGACCTGTCATGGGAGCTTCGTCGTGGCCTGCTCTTTCTGAG 420
Query 715 ACCACCAAAGCTCCTTCCAACAAGTCTTCTTCTGATTCGTTAAAAAGTCTCGGTGATGTA 774
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCACCAAAGCTTCTTCGAACAAGTCTTCTTCTGATTCGTTAAAAAGTCTCGGTGATGTT 480
Query 775 CCATCATCATCGTCAGCATCATCATCTGTCCCCGTTACTCAGGGAATTGCAAATGCTTCT 834
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CCATCATCATC---AGCATCATCATCTGTCCCCGTTTCTCAGGGAATTGCAAATGCTTCT 537
Query 835 GTTCCTGCACCAAAGCAAGCTGGCCGTGCAAACCCTAATCCAACTCCAAATCACTCGCGC 894
||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 538 GTTACTGCTCCAAAGCAAGCTAGCCGTGCAAACCCTAATCCAACTCAAAATCACTCGCGC 597
Query 895 CAGAGATCATTTAAACAACGCAATGGCGCCTCTGGATCAGCTAATGGTACTGTTTCTCAA 954
||| |||||||||||| ||||||| || |||||||| |||||||||||||||||||||
Sbjct 598 CAGCGATCATTTAAAC---GCAATGGTGCATCTGGATCTGCTAATGGTACTGTTTCTCAA 654
Query 955 CCATCAGCGCAGGGTTCATTTACCGAATTGCCTTCGCACAACCCTTCTCCTAGAGGCCAA 1014
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 655 CCATCAGCGCAGGGTTCATTTGCGGAATTGCCTTCGCACAACCCTTCTCCTAGAGGCCAA 714
Query 1015 AACCAGAAGAATGGCTTTGCGTCACAAAACCATGGTGGTACTGAAAACCCATCTCAACGA 1074
|||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 715 AACCAGAAGAATGGCTTTGCGTCACACAACCATGGTGGTATTGAAAACCTATCTCAACGA 774
Query 1075 GACTCCTACAGGAACCAAAACGGTAATCATCACCAAAGTCACGGTGGCAGGCGCAATCAG 1134
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 775 GACTCCAACAGGAACCAAAACGGTCATCATCACCAAAGTCATGGTGGCAGGCGCAATCAG 834
Query 1135 GAGCACGGGAATCAAAATTGGACTTTTCAAAGAAGTTTTAACGGGAGAGAAGGAAATGCG 1194
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 835 GAGCACGGGAATCAAAATTGGACTTTTCAAAGAAGCTTTAATGGGAGAGAAGGAAATGCA 894
Query 1195 CAATCGCAAAGAGGTACTCCAGCTTTTGTAAGACATCCATCACCAACTGTGCAGCCAATT 1254
|||||||||||||||| |||||| |||||||||||| || ||||| || |||||||||||
Sbjct 895 CAATCGCAAAGAGGTATTCCAGCATTTGTAAGACATGCACCACCACCTATGCAGCCAATT 954
Query 1255 CCTC---AGTTTATGGCAGCTCAGCCTTTTCCCAGTCATATA-----CCCTTCCCTACTG 1306
|||| |||||||||||||||||||| ||| |||| | | ||||| ||| |||
Sbjct 955 CCTCCTCAGTTTATGGCAGCTCAGCCTATTC--AGTCTTTTGGTGTGCCCTTTCCTGCTG 1012
Query 1307 AATTGGCA-CAGTCGT--C-GTATTATCCCCGTATGCC---TTACATGACACCTATTCCG 1359
|||||||| | |||| | ||||||||| | |||||| || |||||||||| |||||
Sbjct 1013 AATTGGCATC-GTCGGGGCCGTATTATCCTCATATGCCACCTTTCATGACACCTCTTCCG 1071
Query 1360 CATGGTCCGCAGTTCTTCTACCAT-TATCAAGATCCTCCGTTACACATGAAACTGCATAA 1418
||||||||| || |||||||||| | |||||||||||| ||||||||||||| |||||
Sbjct 1072 CATGGTCCG--GT-CTTCTACCATGT-TCAAGATCCTCCACTACACATGAAACTACATAA 1127
Query 1419 GCAAATACAATATTATTTTAGTGATGAAAATTTGATTACAGACATATACCTTCGAGGGTT 1478
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1128 TCAAATACAATATTATTTTAGTGATGATAATTTGATTACAGACATATACCTTCGCGGGTT 1187
Query 1479 CATGAAT-AATGAGGGTTTTGTTCCGCTACGTGTGGTAGCTGGTTTCAAAAAGGTTGCAG 1537
||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1188 CATGAATGAAC-AGGGTTTTGTTCCGCTACGTGTGGTTGCTGGTTTCAAAAAGGTTGCAG 1246
Query 1538 AACTTACAGATAATATCCAGCAGATAGTGGAGGCTCTTCAAAATTCACCT-CATGTTGAA 1596
|||||||||||| ||||||||| |||||||||||||| |||||||||||| | |||||||
Sbjct 1247 AACTTACAGATAGTATCCAGCAAATAGTGGAGGCTCTACAAAATTCACCTTC-TGTTGAA 1305
Query 1597 GTGCAGGGTGACTTCA-TAAGGAAGCGCGATAATTGGCAAAATTGGGTGCTA---AG--- 1649
||||||||||| | || ||||||||||| ||||||||||||||||| |||| ||
Sbjct 1306 GTGCAGGGTGAAT-CAATAAGGAAGCGCCATAATTGGCAAAATTGGTTGCTTCCTAGAAT 1364
Query 1650 GAGGAACCCTACAGGTTCCGGCCCCCAATCTGTTGATAGGGCAGATGCAGTGGCAAAACG 1709
||||| |||| ||| ||| |||||||||||| ||||||||||||||| |||||||||||
Sbjct 1365 GAGGATCCCTGCAGTTTCTAGCCCCCAATCTGGTGATAGGGCAGATGCTGTGGCAAAACG 1424
Query 1710 ACTTGGAAACTTGTCAGTTGATCAGAGTTCGGCTGATCCCATTGGTGGTTCGAGCAGTCA 1769
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1425 ACTTGGAAACTTGTCGGTTGATCAGAGCTCGGCTGATCCCATTGGTGGTTCGAGCAGTCA 1484
Query 1770 GTTGCAACCTACAGAAGCTCTTTCAGATGATCAGCAACAGTCTTCTAGTACTGCTCCAGT 1829
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1485 GTTGCAACCTACAGAAGCTCTTTCAGATGATCAGCAACAGTCTTCTGGTGCTGCTTCAGT 1544
Query 1830 GAGCAACCACAACGCCCCAGATGGTGCAAACCGTTGA 1866
|||||||||||||| || ||||||||||||||||||
Sbjct 1545 GAGCAACCACAACGACCTGGATGGTGCAAACCGTTGA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5