BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35900.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453 1271 0.0
> Ahg888467 jgi|Araly1|888467|Al_scaffold_0007_453
Length=849
Score = 1271 bits (688), Expect = 0.0
Identities = 805/860 (94%), Gaps = 13/860 (2%)
Strand=Plus/Plus
Query 152 ATGTTGTCATCAGCTAAGCATCAGAGAAACCATAGACTCTCTGCTACAAACAAGAACCAG 211
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTTGTCATCAGCAAAGCATCAGAGAAACCATAGAGTCTCTGCTACAAACAAGAACCAG 60
Query 212 ACTCTCACCAAAGTttcttccatttcatcctcatcaccatcgtcttcttcttcatcatca 271
||||||| || ||||||||||||||||||||||||||||||| || | ||||||
Sbjct 61 ACTCTCAACAGAGTTTCTTCCATTTCATCCTCATCACCATCG------TC-T--TCATCA 111
Query 272 tcaacctcatcatcatctCCTTTACCTTCTCAAGACTCTCAAGCCCAGAAGAGATCTCTT 331
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 112 TCAACCTCATCATCATCTCCTTTACCTTCACAAGACTCTCACGCCCAGAAGAGATCTCTA 171
Query 332 GTCACCATGGAAGAAGTTTGGAATGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 391
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 172 ATCACCATGGAAGAGGTTTGGAAAGACATCAACCTTGCTTCCATCCACCACCTAAACCGA 231
Query 392 CACAGCCCTCATCCACAACACAACCACGAGCCAAGGTTCAGGGGCCAAAACCACCACAAC 451
|||||||| ||||| ||||||||||| ||||||||||||||| |||| ||||| || |||
Sbjct 232 CACAGCCCACATCCTCAACACAACCATGAGCCAAGGTTCAGGAGCCACAACCATCAGAAC 291
Query 452 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAAAGGATCTTTGAACCAGGAACCAGCA 511
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 CAAAACCCTAACTCAATCTTCCAAGATTTTCTCAACGGATCTTTGAACCAGGAACCAGCA 351
Query 512 CCCACAAGCCAGACCACGGGTTCTGCGCCTAATGGCGATTCCACCACGGTCACTGTTCTT 571
||||||||| |||||||||||||||||||||||| ||||||||| | ||||||| |||
Sbjct 352 CCCACAAGCTTGACCACGGGTTCTGCGCCTAATGGTGATTCCACCGCTGTCACTGCTCTC 411
Query 572 TACAGCTCTCCTTTTCCACCTCCTGCAACTGTTCTGAGCTTGAATTCCGGCGCTGGCTTC 631
| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 412 TGCAGCTCTCCTTTTCCACCTCCAGCAACTGTCCTGAGCTTGAATTCTGGCGCTGGCTTC 471
Query 632 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATACCCACCAT 691
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 472 GAGTTTCTCGATAACCAAGATCCTCTTGTTACCTCAAACTCTAATCTTCATAGCCACCAT 531
Query 692 CACCTCTCAAACGCTC-ATGCCTTCAACAC-CTCTTTCGAGGCTCTGGTTCCATCCAGTT 749
||||||||||||| || || |||||||||| | |||| |||||||||||||| |||| ||
Sbjct 532 CACCTCTCAAACGTTCAAT-CCTTCAACACAC-CTTTTGAGGCTCTGGTTCCGTCCACTT 589
Query 750 CTTTTGGTAAGAAAAGAGGCCAAGATTCCAATGAAGGTTCAGGGAATAGAAGACATAAGC 809
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 590 GTTTTGGTAAGAAAAGAGGCCAAGAGTCCAATGAAGGTTCAGGGAATCGAAGACATAAGC 649
Query 810 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGCGCTAGGAAACAGGCTTATACAA 869
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 GTATGATCAAGAACAGAGAATCTGCAGCTCGTTCCCGAGCTAGGAAACAGGCTTATACAA 709
Query 870 ACGAGTTAGAACTTGAAGTTGCTCACTTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 929
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 710 ACGAGTTAGAACTTGAAGTTGCTCACCTGCAGGCAGAAAATGCAAGACTCAAGAGACAAC 769
Query 930 AAGATCAGTTAAAAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 989
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGGATCAGTTGAGAATGGCTGCAGCAATTCAGCAACCCAAAAAGAACACACTTCAACGGT 829
Query 990 CTTCCACAGCTCCATTTTGA 1009
||||||||||||||||||||
Sbjct 830 CTTCCACAGCTCCATTTTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5