BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G35905.1

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491048 jgi|Araly1|491048|fgenesh2_kg.7__481__AT4G35905.1          785    0.0  


> Ahg491048 jgi|Araly1|491048|fgenesh2_kg.7__481__AT4G35905.1
Length=517

 Score =  785 bits (425),  Expect = 0.0
 Identities = 489/520 (94%), Gaps = 4/520 (1%)
 Strand=Plus/Plus

Query  59   CGGAGAGAGCTAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG  118
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CGGAGAGAGCAAAAGATCAAAGCTTTAGAATGGTGAGACTAAACAGAGTGCTGCTAAAAG  60

Query  119  ACGCCGGCAATGTAATTGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCTAAGC  178
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   ACGCCGGCAATGCAATCGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCCAAGC  120

Query  179  AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTT  180

Query  239  TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGG  240

Query  299  AAGGTGATGCATCAAAAGCTTAATGACTTTTGCTTTTGCACCCAAAAAGAAATAAAATGG  358
            ||||||||||||||||||||||||| ||||||||||| ||||| || | |||||||||| 
Sbjct  241  AAGGTGATGCATCAAAAGCTTAATGCCTTTTGCTTTTCCACCCTAATA-AAATAAAATGA  299

Query  359  TCAGAGTGAAGGTATCAGCTTGTATCTGCAGCAACTTATCAATGGTTCGTTCTGTCCTCT  418
            ||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct  300  TCACAGTGAAGGTAGCAACTTGTATCTGCAGCAACTTATCAATGCTTCGTTCTGTCCTCT  359

Query  419  GTACTAGTTACCTGATCATCTCTTCTAAACTCTCTTT-TAGGCTTGTGGCCAAGTTCTGG  477
            ||||||||||| ||||||||||||| | || || ||| |||||||||| |||| ||||| 
Sbjct  360  GTACTAGTTACTTGATCATCTCTTCCACAC-CT-TTTCTAGGCTTGTGACCAACTTCTGC  417

Query  478  TAGCATTTTTAAGTATGAATGTTTGATGGGAAACATTGATGTAACCAATTGAAAAACATT  537
            ||||| |||||||||||||||||| |||||||||||| |||||| |||||| |||||| |
Sbjct  418  TAGCAATTTTAAGTATGAATGTTTTATGGGAAACATTCATGTAAGCAATTGCAAAACAAT  477

Query  538  ATAGGTGTGTAGTTTCAGGTGAATAAACCAACTTTTTCGT  577
             |||||||||||||||||||||||||||| ||||||||||
Sbjct  478  GTAGGTGTGTAGTTTCAGGTGAATAAACCGACTTTTTCGT  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21100040717


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5