BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35910.1
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328161 jgi|Araly1|328161|fgenesh1_pm.C_scaffold_7000388 2141 0.0
> Ahg328161 jgi|Araly1|328161|fgenesh1_pm.C_scaffold_7000388
Length=1380
Score = 2141 bits (1159), Expect = 0.0
Identities = 1308/1381 (95%), Gaps = 5/1381 (0%)
Strand=Plus/Plus
Query 226 ATGGCTTGTAATTCCTCAGGCTGTGAGTCAGGTTGCTATGACCGTGAGAAAGATAATGGA 285
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTGTAATTCCTCAGGCTGTGAGTCGGGTTGCTATGACCGTGAGAAAGATAATGGA 60
Query 286 AGTAAGATA---GTGGATGATGCAGTATCTGGTGGCGGTAATCATGAGAGTGTCTGCGTC 342
||||| ||| ||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 61 AGTAAAATATCCGTGGAAGATGCAGTAGCTGGTGGCGGTAATCAGGAGAGTGTCTGCGTC 120
Query 343 AAGTGTAAATGCAATGCGCCTATGACATTTGGTGACGGTGGCTTC-GACGATGGAAGATT 401
|||||||||||||||| ||||||||||||||| || |||||| || || || ||||||||
Sbjct 121 AAGTGTAAATGCAATGAGCCTATGACATTTGGGGATGGTGGC-TCGGAAGACGGAAGATT 179
Query 402 CTGCGCAGATTGTTTTAGGAACAATGTCTTTGGGAAATTCCGTCTTGCTGTTACTTCTCA 461
||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 180 CTGTGCAGAGTGTTTTAGGAACAATGTCTTTGGGAAGTTCCGTCTCGCTGTTACTTCCCA 239
Query 462 TGCTATGATCACTCCTTCAGATAACGTCCTTGTTGCTTTCTCTGGCGGATCATCTTCCAG 521
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGCCATGATCACTCCTTCAGATAACGTCCTTGTTGCTTTCTCTGGCGGATCATCTTCCAG 299
Query 522 GGTTTCTCTTCAATTTGTGCACGAGTTGCAAATCAAGGCTTTGAAGAATTACGAGGCGAG 581
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTTGCTCTTCAATTTGTCCACGAGTTGCAAATCAAGGCTTTGAAGAATTACGAGGCGAG 359
Query 582 TCGAGATAGATCTTTACCTGTGTTTGGTGTTGGTGTTGCTTTTGTGGATGAAACTGCAGC 641
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TCGAGATAGATCTTTACCTGTGTTTGGTGTTGGTGTTGCGTTTGTGGATGAAACTGCAGC 419
Query 642 TTTTCCTGCTCTTTCCACTGAAATGATTGATGCAATTGAGTGGGTTCGATATACTGTCTC 701
||||||||||||||||||||||||| ||||||| | ||||||| |||||| |||||||||
Sbjct 420 TTTTCCTGCTCTTTCCACTGAAATGGTTGATGCGAGTGAGTGGATTCGATCTACTGTCTC 479
Query 702 GTGTTTGTCTCCACCTGCTAAGGATCTCCATGTTGTTCCAGTCGAAAGCATATTTGGTTC 761
| |||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||
Sbjct 480 GAGTTTGTCTCCACCTGCAAAGGATGTCCATGTTGTTCCAGTCGAAAGCGTCTTTGGTTC 539
Query 762 AGACTCTCTTGACGCACGGGATAGACTTCTGAAGCTATTAGATTCTGTTCCTGACGATAC 821
||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct 540 AGACTCTCTTGACGCGCGGGATAGGCTGGTAAAGCTATTAGATTCTGTTCCTGACGATAC 599
Query 822 TGGAAAAGAAGACCTTCTGCTGCATCTGAAAATGTTATCTTTGCAAAAGGTTGCCGCTGA 881
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 600 TGGAAAAGAAGACCTTCTGCTGCATCTGAAAATGTTGTCTTTGCAAAAGGTTGCCTCTGA 659
Query 882 AAATGGGTACAATAGATTAGTGTTGGGATCATGCACGTCGAGAATTGCTTCCCATGTTCT 941
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AAATGGGTACAACAGATTAGTGGTGGGATCATGCACGTCGAGAATTGCTTCCCATGTTCT 719
Query 942 TACGGCTACTGTCAAGGGACGAGGTTATTCACTATCAGCAGATATTCAGCATGTTGATGC 1001
| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 720 TTCGGCTACTGTCAAGGGACGGGGTTATTCACTATCAGCAGATATTCAGCATGTGGATGC 779
Query 1002 TAGATGGAAGGTTCCCATTGTACTTCCACTTCGAGATTGTGTTCGACTGGAAATAACTAG 1061
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 GAGATGGAAGGTCCCCATTGTACTTCCACTTCGAGATTGTGTCCGACTGGAAATAACTAG 839
Query 1062 ACTCTGCCTTTTGGATGGACTTAAGACTGTGGAGTTGGCTTGTCGTTCTCAATGCGGAAT 1121
|||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 840 ACTCTGCCATTTGGATGGTCTAAAGACTGTGGAGTTGGCTTGTCGTTCTCAATGCGGCAT 899
Query 1122 CAATGATTTGGTGTCTTCATTTGTCGCTCTGTTGCAGGAAGAAAATCCTTCCCGGGAATG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 CAATGATTTGGTGTCTTCATTTGTCGCTCTGTTGCAGGAAGAAAATCCTTCTCGGGAATG 959
Query 1182 CACAATTGTACGGACAGCTGCGAAGCTGACTCCATTTTACTTCAATAAAATTCCGGAAAC 1241
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 960 CACAATTGTACGGACAGCCGCAAAGCTGACTCCATTTTACTTCAACAAAATTCCGGAAAC 1019
Query 1242 AGACGACTCTAATGTACCTATGGCCACTCAGAGGCGCCTAAAGAGATTCAATCTCAAATA 1301
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGATGACTCGAATGTTCCTATGGCCACTCAGAGGCGCCTAAAGAGATTCAATCTCAAATA 1079
Query 1302 TGATGGATCAATGACTACTGAAGCTTTCTGTCCTATCTGCAATGGCCCGCTAAATAGATC 1361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGATGGATCGATGACTACTGAAGCTTTCTGTCCTATCTGCAATGGCCCGCTAAATAGATC 1139
Query 1362 AGACTCATCAGAGTTGGATACTTTTGAAGAAGGCCAGGAATCTGATGTCCTCTATGCTGC 1421
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1140 AGACTCATCAGATTTGGATACTTTTGAAGAAGGCCAGGAAGCTGATGTCCTTTATGCTGC 1199
Query 1422 TTGCTGTTCAAGTTGCCGGTTTCAAATACTTCCACAGGATGGATCATCTCTTGAGCAATT 1481
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1200 TTGCTGTTCAAGTTGCCGGTTTCAAATACTTCCAGAAGATGGATCATCTCTTGAGCAATT 1259
Query 1482 CAGTTCATTTCTACCAGATCACATGATTTCCCAAGTGAAACATCAAAAAGTTGATAGTCA 1541
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 1260 TAGTTCATTTCTACCAGATCACATGATTTCCCAAGTGAAGCATCAAAAGGTTGACAGTCA 1319
Query 1542 AGCTTATCTGAGGGAGAAAATTAAAGACTGTCTGCTCTTGGACGATGAAGAGGTTGTCTA 1601
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGCGCATCTGAGGGAGAAAATAAAAGACTGTCTGCTCTTGGACGATGAAGAGGTTGTCTA 1379
Query 1602 A 1602
|
Sbjct 1380 A 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69552787370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5