BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35920.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1 2798 0.0
Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1 468 8e-131
> Ahg491044 jgi|Araly1|491044|fgenesh2_kg.7__477__AT4G35920.1
Length=1926
Score = 2798 bits (1515), Expect = 0.0
Identities = 1781/1903 (94%), Gaps = 43/1903 (2%)
Strand=Plus/Plus
Query 1 GGGGGGCTCTTGAGCTCCGACGAGTGGCAAGTGAAGAAGGTGTGGGAGAAAGAAAGCTAA 60
|||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| ||
Sbjct 1 GGGGTGCTCTTGAGCTCCGACGAGTGGCAAGT---GAAGGTGTGGGAGGAGGAAAGCAAA 57
Query 61 TGAGAGAAATACATAAATCGACAAAAACAAACCGTCTTCTCATCTCTGCCTCTGGATTTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGAGAGAAATACATAAATCGACAAAAACAAACCGTCTTCTCATCTCTGCCTCTGGATTTA 117
Query 121 ACTCTC--C-CTTCACAGTTGC--A--TA-GAATCTTCTTCTCTGCTCAT-ATTTTGAAG 171
|||||| | |||||| | ||| | || | | ||| |||| || | | ||||| |
Sbjct 118 ACTCTCTTCTCTTCAC-GCTGCAGACTTATGGA-CTTTTTCTTTG-T--TGCTTTTGTTG 172
Query 172 AAATCTCCAGTCGAAGAAACTGCTCCCTCTTTTAGTCAATTCTCGCTTCACTCCCTCAAT 231
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 173 ---TC-GCAGTCGAAGAAACTGCTCCCTCTTTTAGTCAAGTCTCTCTTCACTCCCTCAAT 228
Query 232 ATAATGCGATTTCTCAACCGGAATATCTGAATCTCTCGGTGGTTACCTCTGATATATCGC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 229 ATAATGCGATTTCTCAACCGGAATATCTGAATCTCTCGGTGGTTACCTCTGATTTAGCGT 288
Query 292 CAGG-AAC-TGAACTCCTACTCGATCTCTATCAACAATGCCGTCCTTGTAGAACTTTGGA 349
| || ||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 289 C-GGAAACTTG-ACTCCTACTCGATCTCTATCAACAATGCCGGCCTTGTAGAACTTTGGA 346
Query 350 TCCAACTCTCTGATTCCGTCAATTTCCATTAATATCAGCTCAG-CGAAGG--AACTTTGA 406
||||||||||| ||||||||||||||||| || |||||||| | | |||| || |||
Sbjct 347 TCCAACTCTCTCATTCCGTCAATTTCCATAAACATCAGCTCTGTC-AAGGTTAA--ATGA 403
Query 407 GTAGAAGAA-GATAATGTCACATTCATGGGATGGTCTTGGGGAGATTGCGTCAGTGGCTC 465
| |||||| || ||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 404 ATTGAAGAAGGA-AATGTCACATTCATGGGATGGTCTTGGAGAGATCGCGTCAGTGGCGC 462
Query 466 AGCTGACTGGTTTAGATGCGGTCAAGTTGATTGGTCTCATAGTCAAAGCTGCGAATACTG 525
|||| |||||||||||||| |||||||||||||| || ||||| |||||||| |||||||
Sbjct 463 AGCTCACTGGTTTAGATGCCGTCAAGTTGATTGGCCTTATAGTTAAAGCTGCCAATACTG 522
Query 526 CTTGGATGCATAAGAAGAATTGTCGTCAATTCGCTCAACATCTCAAACTCATTGGGAATT 585
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 523 CTTGGATGCACAAGAAGAATTGTCGCCAATTCGCTCAACATCTCAAACTCATTGGGAATT 582
Query 586 TGCTTGAACAGCTGAAGATCTCTGAGATGAAGAAGTATCCTGAGACTCGAGAGCCTCTCG 645
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 583 TGCTTGAGCAGCTGAAGATCTCTGAGATGAAGAAGTATCCAGAGACTCGAGAGCCTCTCG 642
Query 646 AAGGGCTTGAGGATGCTTTGAGAAGGTCTTACCTTCTGGTCAATAGCTGTAGAGACCGGA 705
||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 643 AAGGGCTCGAGGATGCTTTGAGGAGGTCTTACCTTCTGGTCAATAGCTGTAGGGACCGGA 702
Query 706 GCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAGTTCAGGAAACATCAGG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAGTTCAGGAAACATCAGG 762
Query 766 ATGAGATTGATCGTTTTCTTAAGATCATACCTCTCATCACTTTGGTCGATAACGCTCGCA 825
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 ATGAGATTGATCGTTTTCTTAAGATCATACCTCTCATCACTTTGGTGGATAACGCTCGCA 822
Query 826 TTCGGGAGAGGTTTGAGTATATTGACCGTGATCAGCGTGAGTACACTCTGGATGAAGAGG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTCGGGAGAGGTTTGAGTATATTGACCGTGATCAGCGTGAGTACACTCTGGATGAAGAGG 882
Query 886 ATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGCATCAGTAC 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 883 ATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGCATCAGTGC 942
Query 946 TGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCTCTCAAAACAG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCTCTCAAAACAG 1002
Query 1006 AAAACGAGAAACTGCAGATCGAACTTCAGCGGTCGCAGGAGCATTATGATGTGGCTCAGT 1065
||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1003 AAAACGAGAAACTGCAGCTTGAACTTCAGCGTTCGCAGGAGCATTATGATGTAGCTCAGT 1062
Query 1066 GTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTGTTGAACCTGACT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTGTTGAACCTGACT 1122
Query 1126 CTGAGAAGGAGCTGACAAAGAAAGCTTCCAAAAAATCTGAACGTAGCTCAAGCATGAAGA 1185
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1123 CTGAGAAGGAGCTGACAAAGAAAGCTTCGAAAAAATCTGAGCGTAGCTCAAGCATGAAGA 1182
Query 1186 CGGAATATTCGTATGACGAAGATTCTCCCAAGAAAAGCAGTACTCGTGCAGCTTCGAGAT 1245
| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1183 CAGAATATTCGTATGACGAAGATTCTCCCAAGAAAAGCAGTAGTCGTGCAGCTTCCAGAT 1242
Query 1246 CCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGCACAAC 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1243 CCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGTACAAC 1302
Query 1306 ACCATGAAGAATGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTGCTTCA 1365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1303 ACCATGAAGAATGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTGCTTGA 1362
Query 1366 AGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCCAACAGGC 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1363 AGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCTAACAGGC 1422
Query 1426 ACATCTCTTCAGCTGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCTTGTT 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 ACATCTCTTCAGCTGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCGTGTT 1482
Query 1486 GCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGGGAGGAT 1545
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1483 GCTGCTATACTTGTTGCGTAAGGAGGAAACTCCGGAAGACACTGAACATCACGGGAGGGT 1542
Query 1546 TCATTGACGATTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAAGAACTGA 1605
||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct 1543 TCATTGACGATTTTCTATCTCATCTGATGTGTTGTTGCTGTGCTCTTGTCCAAGAACTGA 1602
Query 1606 GAGAAGTTGAGATTCGTGGGGCATATGGTACGGAGAAGACGAAAATAAGCCCGCCTTCGT 1665
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1603 GAGAAGTAGAGATTCGTGGGGCTTATGGTACGGAGAAGACGAAAATAAGTCCGCCTTCGT 1662
Query 1666 CGCAGTTCATGGAACATTGAAATCTTCTATTATACAAAAGGTGAACAAAAACAACGATTT 1725
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1663 CGCAGTTCATGGAACATTGAAATCTTCTATTACACAAAAGGTGAACAAAAACAACTATAT 1722
Query 1726 GTTGTAACTCTGGATACGAGACGAGATTCTTCTTCGTACTACTCACTTAATAT-TATTGT 1784
|||||||||||||||| || | |||||||||||||||||||| |||||||||| | ||||
Sbjct 1723 GTTGTAACTCTGGATATGACAGGAGATTCTTCTTCGTACTACACACTTAATATCT-TTGT 1781
Query 1785 GTTAAATCGTGGAGTCGTATGTAAATTAGTTTGGGATTCTCATCTTAATTTCAGCAATTT 1844
|||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1782 TTTAATTT-TGGAGTCGTATGTAAATTAATTTGGGATTCTCATCGAAATTTCAGCAATTT 1840
Query 1845 GTGTTGTGTGTATCACATA---TA--GACTAACTAATTCTTAT 1882
||| |||||||||||||| || ||||||||| |||||||
Sbjct 1841 GTG--GTGTGTATCACATAGACTATAGACTAACTACTTCTTAT 1881
Score = 78.7 bits (42), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1922 GATGGCCAATTGAACCAAACTTGTGTTTTGGGTCAAAATAGTAGT 1966
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1882 GATGGCCAATTTAACCAAACTTGTGTTTTGGGTCAAAATAGTAGT 1926
> Ahg480672 jgi|Araly1|480672|fgenesh2_kg.3__3373__AT2G17780.1
Length=1484
Score = 468 bits (253), Expect = 8e-131
Identities = 601/764 (79%), Gaps = 44/764 (6%)
Strand=Plus/Plus
Query 410 GAAGAAGATAATGTC-ACATTCATGGGAT-GGTCTTGGGGAGATTGCGTCAGTGGCTCAG 467
|||| ||| |||| | | ||||||||||| || | || || ||| ||||||| ||||||
Sbjct 3 GAAG-AGA-AATGGCTA-ATTCATGGGATCAGT-TAGGAGAAATTCCGTCAGTAGCTCAG 58
Query 468 CTGACTGGTTTAGATGCGGTCAAGTTGATTGGTCTCATAGTCAAA-GCTGCGAATACTGC 526
|| || || |||| || | || ||||||| | ||||| ||| ||||||||||| ||
Sbjct 59 CTTACAGGCATAGACGCCCTAAAACTGATTGGAATGATAGT-AAACGCTGCGAATACAGC 117
Query 527 TTGGATGCATAAGAAGAATTGTCGTCAATTCGCTCAACATCTCAAACTCATTGGGAATTT 586
| | ||||| |||||||||||||||||||||||||| ||||| || ||||| | |||||
Sbjct 118 TCGAATGCACAAGAAGAATTGTCGTCAATTCGCTCACCATCTTAAGCTCATCCGTAATTT 177
Query 587 GCTTGAACAGCTGAAGATCTCTGAGATGAA-GAA-GTATCCTGAGACTCGAGAGCCTC-T 643
||| || ||| | || | |||||||||||| || || | | |||| || ||||| | |
Sbjct 178 GCTAGAGCAGATAAAAAACTCTGAGATGAATCAACGT-T-CAGAGATTCTTGAGCCGCTT 235
Query 644 CGAAGGGCTTGAGGATGCT-TTGAGAAGGTCTTACCTTCTGGTCAATAGCTGT-AGAGAC 701
| |||| ||||| |||||| || ||||| |||||| || | ||||| || ||| | |||
Sbjct 236 C-AAGGACTTGATGATGCTCTT-AGAAGATCTTACATTTTAGTCAAAAGTTGTCA-AGAA 292
Query 702 CGGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAG-TTCAGGAAA-C 759
||| ||||||||||||||||||||||| |||||||||||| ||||| || | ||| |
Sbjct 293 AAGAGTTATCTTTACTTGTTGGCTATGGGATGGAACATTGTTAACCAGTTTGA-AAAAGC 351
Query 760 ATCAGGA-TGAGATTGATCGT-TTTCTTAAGATCATACCTCTCATCACTTTGGTC-GATA 816
||| || |||||||||| | ||||| |||||| | || ||||| | | ||| | ||||
Sbjct 352 -TCA-GACCGAGATTGATC-TGTTTCTCAAGATCGTTCCACTCATAAATATGG-CGGATA 407
Query 817 ACGCTCGCATTCGGGAGAGGTTTG-AGTATATTGACCGTGATCAGCGTGAGTACACTCTG 875
| |||||||||||||||||||| | || |||||| |||||||||||||||||||||||
Sbjct 408 ATGCTCGCATTCGGGAGAGGTTAGAAG-CTATTGAACGTGATCAGCGTGAGTACACTCTT 466
Query 876 GATGAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCA 935
||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 467 GATGAAGAGGATAAAAAGGTGCAAGATGTTATTTTGAAACAAGAATCCACTAGAGAAGCA 526
Query 936 GC-A--TCAGTACTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAA 992
|| | || || | ||||| || || ||| | || ||||| ||| || | ||||| ||
Sbjct 527 GCTACATCGGTTTTAAAGAAAACGCTTTCTCGTTCCTACCCGAACATGGGGTTCTGCCAA 586
Query 993 GCTCTCAAAACAGAAAACGAGAAACTGCAGA-TCGAACTT-CAGCGGTCGCAGGAGCATT 1050
|| || |||||||| | ||||||||||| | | || || || || |||| || || |
Sbjct 587 GCGCTTAAAACAGAGGAGGAGAAACTGCA-ACTTGAG-TTACATCGTTCGCGGGCGCGGT 644
Query 1051 ATGATG-TGGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCT 1109
|||||| || ||| |||||||| || || ||||| |||| |||||||||| ||||||||
Sbjct 645 ATGATGCTGA-TCAATGTGAAGTTATACAACGTTTGATTGATGTTACACAAACTGCTGCT 703
Query 1110 GCT---GTTGAACCTGACTCT-GAGAAGGAGCTGACAAAGAAAG 1149
|| ||||||||| | ||| || |||| |||| |||||||
Sbjct 704 TCTTCTGTTGAACCTAA-TCTTGAAAAGGTTTTGACTAAGAAAG 746
Score = 342 bits (185), Expect = 5e-93
Identities = 321/386 (83%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 1242 AGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGCA 1301
||||| || ||| |||||||||| || ||||| || ||||| ||||| ||| | |
Sbjct 818 AGATCAACGTCTTATGTTTCATCCGGACATGAACTACTTTCGGGAAGATCAT--C--G-- 871
Query 1302 CAACACCATGAAGAA-TGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTG 1360
|||||||||||| || ||||| ||||||| || | |||||| || ||||||| ||||||
Sbjct 872 CAACACCATGAA-AATTGGCACGCCGACTTGCTGGATTGTTGTTCAGAACCTTGTCTTTG 930
Query 1361 CTTCAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCCAA 1420
|||||||||||||||||||||||||||||| |||||||||||| | ||| ||| | |
Sbjct 931 CTTCAAGACATTCTTTTTCCCGTGTGGTACATTGGCAAAGATTTCTACTATGGCAACTGA 990
Query 1421 CAGGCACATCTCTTCAGCTGAAGCATGTAATGAGC-TAATGGCGTATTCTTTGATACTTT 1479
|||||| ||||||||| ||||||| ||||| || | |||||| ||||||||||||||| |
Sbjct 991 CAGGCAAATCTCTTCAACTGAAGCGTGTAA-GAACCTAATGGTGTATTCTTTGATACTCT 1049
Query 1480 CTTGTTGCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGG 1539
| || || ||||||||||| ||| | |||| ||| || || ||||| |||||||| ||||
Sbjct 1050 CATGCTGTTGCTATACTTGCTGCATAAGGAAGAAGCTTCGAAAGACTCTGAACATAACGG 1109
Query 1540 GAGGATTCATTGACGA-TTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAA 1598
|||| | ||||||||| |||| | || ||| ||||||||||||| ||||||||||| |||
Sbjct 1110 GAGGGTGCATTGACGACTTTT-TGTCACATCTAATGTGTTGTTGTTGTGCCCTTGTCCAA 1168
Query 1599 GAACTGAGAGAAGTTGAGATTCGTGG 1624
|||||||||||||| |||||||||||
Sbjct 1169 GAACTGAGAGAAGTCGAGATTCGTGG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5