BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35930.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888463 jgi|Araly1|888463|Al_scaffold_0007_449 1129 0.0
Ahg922788 jgi|Araly1|922788|scaffold_104069.1 340 1e-92
> Ahg888463 jgi|Araly1|888463|Al_scaffold_0007_449
Length=906
Score = 1129 bits (611), Expect = 0.0
Identities = 732/789 (93%), Gaps = 14/789 (2%)
Strand=Plus/Plus
Query 458 CTAAGTCCTGCAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATATTAAGCATGCGA 517
||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 131 CTAAGTCATGTAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATACTAAGCATGCAA 190
Query 518 GGAACAATAAAATGGCAG-TGGAACAGTTGAATTCTCCAAAAAGCCCTCTTATGTTGTCC 576
||||||| |||||||| | | || || ||||||||||| ||||||||||| |||||||||
Sbjct 191 GGAACAAGAAAATGGCGGCT-GAGCATTTGAATTCTCCCAAAAGCCCTCTAATGTTGTCC 249
Query 577 CCTGTCAACGTTGTTAAGCGGAGTACTCTGGTGAGGCCAATGAAGTTTGATGATCTGCAG 636
|||||||||||||||||||| |||||||||||||||||||||||| || ||| || |
Sbjct 250 CCTGTCAACGTTGTTAAGCGTAGTACTCTGGTGAGGCCAATGAAG-TT--TGA--TG-A- 302
Query 637 GTGGAGAGTAATAATACTTGTAAGAAAAGCCCTTTAATGTTATCCCCAATGGGTATTGTT 696
| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 303 -T----AGTAATAACAGTTGTAAGAAAAGCCCTTTAATGTTATCTCCAATGGGTATTGTT 357
Query 697 ATGCAAAACACTCTGTTGAGGACACCAAAAACTCCCCAAGCTGATCCTTGCGTTTCAGAA 756
|||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 ATGCAAAACACTTTGGTGAGGACACCAAAAACTCCCCAAGCTGATCCTTGCAATTCAGAA 417
Query 757 TCACAGCTTGAGTCTCTTCCCATGGATTTACTGGTTAAAATAGTTTGTCATCTGCACCAT 816
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCAGCTTGAATCTCTTCCCATGGATTTACTGGTTAAAATAGTTTGTCATCTGCACCAT 477
Query 817 GACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCCACCATACTTGCA 876
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 478 GACCAGCTGAAGGCAGTTTTCCATGTTTCTCAAAGAATAAGAATGGCTACCATTCTTGCA 537
Query 877 AGACAATATCATTTCAATTATACAACACCAGACCGCTCAAGACAGGAAATGTTGAGGGTC 936
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 538 AGACAATATCATTTTAATTATACAACGCCAGATCGCTCAAGACAGGAAATGTTGAGTGTC 597
Query 937 ATGACCCCAGTTCCAATAAATCGTTGGCCATTTCGTAGAGGAGATGGAAACCCAACAATG 996
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 ATGACCCCAATGCCAATAAATCGTTGGCCATTCCGTAGAGGAGATGGAAACCCAACAATG 657
Query 997 GTGTCAAGCCCACATACCCCCAAAGCACCAAAACATGCTCCTAGACCACCCTCTCGAACC 1056
|||||||||||||||||||| ||||| ||||||||||| ||| | ||||||| | |||||
Sbjct 658 GTGTCAAGCCCACATACCCCAAAAGCGCCAAAACATGCACCTCGTCCACCCTATAGAACC 717
Query 1057 AAACTCGCGGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCATTTCCT 1116
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 AAACTCGCAGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCGTTTCCT 777
Query 1117 TCAAGATGCATCGTTCCTTCTGTTCTCCAGAGGCCGACTTTGTTCAAACCAATGGCTCCA 1176
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TCAAGGTGCATCGTTCCTTCTGTTCTCCAAAGGCCGACTTTGTTCAAACCAATGGCTCCA 837
Query 1177 AAGCACCCTCGAGTGCTCTTCTATGAGGATGAACTATGTCAAGCTGTTGCTCAAAACAAC 1236
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 AAGCACCCTCGAGTGCTCTTCTATGAGGATGAATTATGTCAAGCTGTTGCTCAAAACAAC 897
Query 1237 CTCACCTGA 1245
|| ||||||
Sbjct 898 CTTACCTGA 906
Score = 279 bits (151), Expect = 3e-74
Identities = 178/191 (93%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 280 ATGGGGAAGGTATCTCCAAAGGATTTGGATTCAAAAACCTCGGTGAGGAAAAAGAAGTTG 339
||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGGTGTCTCCAAAAGACTTGGATTCTAAAACCTCGGTGAGGAAAAAGAAGTTG 60
Query 340 AAAAGTTCAAGTAACAAGTATTTAAAGCCAGGGGCTTTGGTTCAGCTTTGTTACAGCAAA 399
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AAAGGTTCAGGTAACAAATATTTAAAGCCAGGGGCTTTGGTTCAGCTTTGTTATAGCAAA 120
Query 400 GCATCGGCTGCTAAGTCATGTAATGAATTAGGGAAGAAACGAGTACCTGTGTTTGATACT 459
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 121 GCATCGGCTGCTAAGTCATGTAATGATTTGGGGAAGAAACGAGTACCTGTATTTGATACT 180
Query 460 AAGTCCTGCAA 470
||| | |||||
Sbjct 181 AAG-CATGCAA 190
> Ahg922788 jgi|Araly1|922788|scaffold_104069.1
Length=314
Score = 340 bits (184), Expect = 1e-92
Identities = 234/258 (91%), Gaps = 4/258 (2%)
Strand=Plus/Plus
Query 888 TTTCAATTATACAACACCAGACCGCTCAAGACAGGAAATGTTGAGGGTCATGACCCCAGT 947
|||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||| |
Sbjct 58 TTTCAA-TATACAACGGCAGACCGCTCAAGACAGGAAATGTTGAGTGTCATGAGCCCAAT 116
Query 948 TCCAATAAATCGTTGGCCATTTCGTAG-AG--GAGATGGAAACCCAACAATGGTGTCAAG 1004
|||||||||| ||||||||| | ||| || || | |||||||||||||||||||||||
Sbjct 117 GCCAATAAATCATTGGCCATTCCATAGCAGAAGACAGGGAAACCCAACAATGGTGTCAAG 176
Query 1005 CCCACATACCCCCAAAGCACCAAAACATGCTCCTAGACCACCCTCTCGAACCAAACTCGC 1064
||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||
Sbjct 177 CCCACATACCCATAAAGCACCAAAACATGCACCTCGTCCACCCTTTCGAACCAAACTCGC 236
Query 1065 GGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCATTTCCTTCAAGATG 1124
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 237 AGAGATGAAGCAAATCACTGCTGTTCTTTTCCAAGACCAGACACCGTTTCCTTCATGATG 296
Query 1125 CATCGTTCCTTCTGTTCT 1142
||||||||||||||||||
Sbjct 297 CATCGTTCCTTCTGTTCT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5