BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35940.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491042 jgi|Araly1|491042|fgenesh2_kg.7__475__AT4G35940.1 1264 0.0
> Ahg491042 jgi|Araly1|491042|fgenesh2_kg.7__475__AT4G35940.1
Length=1229
Score = 1264 bits (684), Expect = 0.0
Identities = 796/848 (94%), Gaps = 15/848 (2%)
Strand=Plus/Plus
Query 687 GAAGCGGATTGAGAAGCAGCAGCCTCTCAATGGTAGACATAACAACAAGGAGAAGCAGAA 746
||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 390 GAAGCAGAAGGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACCAGAAGCAGAA 449
Query 747 AGAGAAACAGCAGCCTCTCGATGTTAGACAT---AACAACAACGACTCTGAAAGCATCAT 803
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 450 GGAGAAACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGACTCTGAAAGCATCAT 509
Query 804 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 569
Query 864 TCAAGAAAAACCAGGTCCTTCTCGGGGAATAAAGTTAGACTCGTCCCAACTTCCTACTAG 923
||||||||||||||||||||| |||||||||||||| || |||||||| || |||||||
Sbjct 570 TCAAGAAAAACCAGGTCCTTCCCGGGGAATAAAGTTTGATTCGTCCCAGGTTGCTACTAG 629
Query 924 AGAGCCGGTTAATCAACATCCTTGTTCCACTTCTGCAGCAGAACATG-CTTCGAAGCCAC 982
|||||| |||||||||||||||||||||||||||||| ||||||||| || | |||||||
Sbjct 630 AGAGCCTGTTAATCAACATCCTTGTTCCACTTCTGCACCAGAACATGTCT-CAAAGCCAC 688
Query 983 GAGAAGAGAAAAGGAAAGATCCCATTTTTAGAGGGAAACACGGTAAAGAGAAGATATCCT 1042
||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||
Sbjct 689 GAGAAGAGAAAAGGAAAGATCCCTTTTTTAGAGGAAAACTCGGTAAAGAGAAGATATCCT 748
Query 1043 CATCCTCTACTCGAGAAACTTATCAACCTCC-TAAAAGCCTATGCAATTGCCCTCCATCC 1101
||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 749 CATCCGCTACTCAAGAAACTTATCAACC-CCGTAAAAGCCTATGCAATTGCCCTCCATCC 807
Query 1102 ATGGTGTTGCAATTCTTGGACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 1161
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 808 ATGGTGTTGCAATTCTTGAACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 867
Query 1162 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCATGAAGAAGCCGCCAAGT 1221
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 868 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCAAGAAGAAGCC---AAGT 924
Query 1222 AGCACCACAGAAATATGCAAACAACTTAATAGAGAGAATGAGATCAAGCAAGTAGGCAAT 1281
||| |||||||||||||||| |||||||| ||| | | ||||||||||| |||| |||||
Sbjct 925 AGCCCCACAGAAATATGCAATCAACTTAACAGAAACAGTGAGATCAAGCCAGTAAGCAAT 984
Query 1282 ACAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TCAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1044
Query 1342 ACAGTCCCGTTCTGATAACAT-CAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1400
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ACAGTCCCGTTCTGATAA-ATTCAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1103
Query 1401 ACATCCATGTTCTGGACCAGACAGTTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTATA 1460
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1104 ACGTCCATGTTCTGGATCAGACA-TTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTCTA 1162
Query 1461 AGAAGAACACACTGTTTGTTATTCTTTGCGGTTGGTAACCAATATAGTAATATCAGTATT 1520
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1163 AGAAGAACACAGTGTTTGTTATTCTTTGCGGTTGGTAACTAATATAGTAATATCAGTATT 1222
Query 1521 -TCGTCTC 1527
| |||||
Sbjct 1223 GT-GTCTC 1229
Score = 416 bits (225), Expect = 2e-115
Identities = 336/385 (87%), Gaps = 26/385 (7%)
Strand=Plus/Plus
Query 159 gaaggagaggaaggagaagaaggagaagaaggagaaaaagaggaaggagagggaaggaaa 218
||||||||| || || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 117 GAAGGAGAGAAAAGATAAGAAGGAGAAGAAGGAGAAGAAGAGGAAGGAAAGGGAAGGAAA 176
Query 219 ggaagttggaagcgaaaagCGCAGTCATAAGAGACGGCGTAAAGAAG-A-----C----- 267
||||| || ||||||||| | |||||| ||||||||||||||||||| | |
Sbjct 177 GGAAGGTGTAAGCGAAAAACACAGTCAGAAGAGACGGCGTAAAGAAGAAGGTGCCAAAGA 236
Query 268 -GGTGC---T---AAAGTTGATCTTTTTCACAAACTAAAAGAAAGTGAAGTCAATTGTTT 320
||||| | |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 237 TGGTGCGAATCAGAAAGTTGATCCTTTTCACAAACTAAAAGAAAGTGAAACCAATTGTTT 296
Query 321 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAAAACTCTTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAGAACTCTTG 356
Query 381 TGATAGCACTCTTAACAGCAATGAGATGTTACCGAAGCAGAAGGAGGTCCAGCAGCCTCT 440
||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 357 TGATAGCACTCTTAATAGCAATGAGATATTACCGAAGCAGAAGGAGAAGCAGCAGCCTCT 416
Query 441 CGATGGTAGACATAACAACAACAACAA-CGAGAAGCGTGTGGAGAAGCAGCAGCCTCTCG 499
|||||||||||||||||||||| | || | ||||| | | | || |||||||||||||
Sbjct 417 CGATGGTAGACATAACAACAACCAGAAGC-AGAAG-GAG---A-AA-CAGCAGCCTCTCG 469
Query 500 ATGGTAGACATAACAACAACAACGA 524
||| |||||||||||||||||||||
Sbjct 470 ATGTTAGACATAACAACAACAACGA 494
Score = 130 bits (70), Expect = 3e-29
Identities = 91/100 (91%), Gaps = 5/100 (5%)
Strand=Plus/Plus
Query 480 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGC-GTGTGGAGA 538
|||||||||||||||||||||||||||||||||||||||| | |||||| | |||||
Sbjct 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAA-GGAGA 454
Query 539 AGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGA 578
| |||||||||||||||| |||||||||||||||||||||
Sbjct 455 AACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494
Score = 130 bits (70), Expect = 3e-29
Identities = 90/99 (91%), Gaps = 3/99 (3%)
Strand=Plus/Plus
Query 534 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGGATTGAGAA 593
|||||||||||||||||||||||||||||||||||||||| | |||||| || |||||
Sbjct 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAAGGAGAA 455
Query 594 GCAGCAGCCTCTCAATGGTAGACATAACAACAACAACGA 632
|||||||||||| ||| |||||||||||||||||||||
Sbjct 456 ACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5