BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G35940.1 Length=1527 Score E Sequences producing significant alignments: (Bits) Value Ahg491042 jgi|Araly1|491042|fgenesh2_kg.7__475__AT4G35940.1 1264 0.0 > Ahg491042 jgi|Araly1|491042|fgenesh2_kg.7__475__AT4G35940.1 Length=1229 Score = 1264 bits (684), Expect = 0.0 Identities = 796/848 (94%), Gaps = 15/848 (2%) Strand=Plus/Plus Query 687 GAAGCGGATTGAGAAGCAGCAGCCTCTCAATGGTAGACATAACAACAAGGAGAAGCAGAA 746 ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 390 GAAGCAGAAGGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACCAGAAGCAGAA 449 Query 747 AGAGAAACAGCAGCCTCTCGATGTTAGACAT---AACAACAACGACTCTGAAAGCATCAT 803 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 450 GGAGAAACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGACTCTGAAAGCATCAT 509 Query 804 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 TCGGATTCGATTGCCTATTCGAAGGCAGAAAGATCCCGAGGTGATGATGACCAATAAGGA 569 Query 864 TCAAGAAAAACCAGGTCCTTCTCGGGGAATAAAGTTAGACTCGTCCCAACTTCCTACTAG 923 ||||||||||||||||||||| |||||||||||||| || |||||||| || ||||||| Sbjct 570 TCAAGAAAAACCAGGTCCTTCCCGGGGAATAAAGTTTGATTCGTCCCAGGTTGCTACTAG 629 Query 924 AGAGCCGGTTAATCAACATCCTTGTTCCACTTCTGCAGCAGAACATG-CTTCGAAGCCAC 982 |||||| |||||||||||||||||||||||||||||| ||||||||| || | ||||||| Sbjct 630 AGAGCCTGTTAATCAACATCCTTGTTCCACTTCTGCACCAGAACATGTCT-CAAAGCCAC 688 Query 983 GAGAAGAGAAAAGGAAAGATCCCATTTTTAGAGGGAAACACGGTAAAGAGAAGATATCCT 1042 ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct 689 GAGAAGAGAAAAGGAAAGATCCCTTTTTTAGAGGAAAACTCGGTAAAGAGAAGATATCCT 748 Query 1043 CATCCTCTACTCGAGAAACTTATCAACCTCC-TAAAAGCCTATGCAATTGCCCTCCATCC 1101 ||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 749 CATCCGCTACTCAAGAAACTTATCAACC-CCGTAAAAGCCTATGCAATTGCCCTCCATCC 807 Query 1102 ATGGTGTTGCAATTCTTGGACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 1161 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 808 ATGGTGTTGCAATTCTTGAACGTAGTTGAGAATTGGGTCCCTAACACGATCGAGAGAAGA 867 Query 1162 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCATGAAGAAGCCGCCAAGT 1221 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 868 GTAGACCTCATTAACTCTGAAGATGAAGAATGTTGGTGGTCCAAGAAGAAGCC---AAGT 924 Query 1222 AGCACCACAGAAATATGCAAACAACTTAATAGAGAGAATGAGATCAAGCAAGTAGGCAAT 1281 ||| |||||||||||||||| |||||||| ||| | | ||||||||||| |||| ||||| Sbjct 925 AGCCCCACAGAAATATGCAATCAACTTAACAGAAACAGTGAGATCAAGCCAGTAAGCAAT 984 Query 1282 ACAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1341 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 985 TCAATGGGGTGGCCATGTGCTCGCCTTTTACCAGAAGCTGATGTCTACGCCTTACCTTAC 1044 Query 1342 ACAGTCCCGTTCTGATAACAT-CAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1400 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1045 ACAGTCCCGTTCTGATAA-ATTCAAAGAGCAGGAAGTTTTTAACAAGGAATCTGGTCGAG 1103 Query 1401 ACATCCATGTTCTGGACCAGACAGTTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTATA 1460 || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || Sbjct 1104 ACGTCCATGTTCTGGATCAGACA-TTTTTTGGTTTAGCCTTAAAATTCCAAGGTTGTCTA 1162 Query 1461 AGAAGAACACACTGTTTGTTATTCTTTGCGGTTGGTAACCAATATAGTAATATCAGTATT 1520 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1163 AGAAGAACACAGTGTTTGTTATTCTTTGCGGTTGGTAACTAATATAGTAATATCAGTATT 1222 Query 1521 -TCGTCTC 1527 | ||||| Sbjct 1223 GT-GTCTC 1229 Score = 416 bits (225), Expect = 2e-115 Identities = 336/385 (87%), Gaps = 26/385 (7%) Strand=Plus/Plus Query 159 gaaggagaggaaggagaagaaggagaagaaggagaaaaagaggaaggagagggaaggaaa 218 ||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 117 GAAGGAGAGAAAAGATAAGAAGGAGAAGAAGGAGAAGAAGAGGAAGGAAAGGGAAGGAAA 176 Query 219 ggaagttggaagcgaaaagCGCAGTCATAAGAGACGGCGTAAAGAAG-A-----C----- 267 ||||| || ||||||||| | |||||| ||||||||||||||||||| | | Sbjct 177 GGAAGGTGTAAGCGAAAAACACAGTCAGAAGAGACGGCGTAAAGAAGAAGGTGCCAAAGA 236 Query 268 -GGTGC---T---AAAGTTGATCTTTTTCACAAACTAAAAGAAAGTGAAGTCAATTGTTT 320 ||||| | |||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 237 TGGTGCGAATCAGAAAGTTGATCCTTTTCACAAACTAAAAGAAAGTGAAACCAATTGTTT 296 Query 321 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAAAACTCTTG 380 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 297 GGAGAAGAGCAGCCTTACTGTAGAACGTGAGCTGCTTCAGTCGACGTCCCAGAACTCTTG 356 Query 381 TGATAGCACTCTTAACAGCAATGAGATGTTACCGAAGCAGAAGGAGGTCCAGCAGCCTCT 440 ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct 357 TGATAGCACTCTTAATAGCAATGAGATATTACCGAAGCAGAAGGAGAAGCAGCAGCCTCT 416 Query 441 CGATGGTAGACATAACAACAACAACAA-CGAGAAGCGTGTGGAGAAGCAGCAGCCTCTCG 499 |||||||||||||||||||||| | || | ||||| | | | || ||||||||||||| Sbjct 417 CGATGGTAGACATAACAACAACCAGAAGC-AGAAG-GAG---A-AA-CAGCAGCCTCTCG 469 Query 500 ATGGTAGACATAACAACAACAACGA 524 ||| ||||||||||||||||||||| Sbjct 470 ATGTTAGACATAACAACAACAACGA 494 Score = 130 bits (70), Expect = 3e-29 Identities = 91/100 (91%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 480 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGC-GTGTGGAGA 538 |||||||||||||||||||||||||||||||||||||||| | |||||| | ||||| Sbjct 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAA-GGAGA 454 Query 539 AGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGA 578 | |||||||||||||||| ||||||||||||||||||||| Sbjct 455 AACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494 Score = 130 bits (70), Expect = 3e-29 Identities = 90/99 (91%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 534 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAACAACGAGAAGCGGATTGAGAA 593 |||||||||||||||||||||||||||||||||||||||| | |||||| || ||||| Sbjct 399 GGAGAAGCAGCAGCCTCTCGATGGTAGACATAACAACAAC--C-AGAAGCAGAAGGAGAA 455 Query 594 GCAGCAGCCTCTCAATGGTAGACATAACAACAACAACGA 632 |||||||||||| ||| ||||||||||||||||||||| Sbjct 456 ACAGCAGCCTCTCGATGTTAGACATAACAACAACAACGA 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57173457745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5