BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35950.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1 1090 0.0
Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1 734 0.0
Ahg937990 jgi|Araly1|937990|scaffold_502181.1 616 2e-175
Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1 392 3e-108
> Ahg491041 jgi|Araly1|491041|fgenesh2_kg.7__474__AT4G35950.1
Length=1026
Score = 1090 bits (590), Expect = 0.0
Identities = 756/830 (91%), Gaps = 36/830 (4%)
Strand=Plus/Plus
Query 329 gaagaagaagaagaagaGGCAATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGT 388
||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 230 GAAGAAGAAGAGGTGGAGGCAATGAGCGCTTCAAGGTTCATAAAGTGTGTCACCGTTGGT 289
Query 389 GATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACG 448
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 290 GATGGAGCTGTTGGTAAAACCTGTTTGCTGATCTCCTACACCAGCAACACTTTTCCCACG 349
Query 449 GATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACG 508
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GATTATGTTCCCACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACC 409
Query 509 GTGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTG 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 GTGAATCTTGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTG 469
Query 569 AGTTACCGTGGTGCTGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTAT 628
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGTTACCGCGGTGCCGATGTTTTCATTCTTGCCTTCTCTCTCATTAGTAAGGCTAGTTAT 529
Query 629 GAGAATGTTTCCAAGAAGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATT 688
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 530 GAGAATGTTTCCAAGAAGTGGATCCCAGAGTTGAAGCACTATGCTCCTGGTGTCCCAATT 589
Query 689 GTCCTTGTTGGAACCAAACTAGATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCT 748
||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 590 GTCCTCGTTGGAACCAAACTTGATCTTCGGGATGACAAACAGTTCTTCATCGACCATCCT 649
Query 749 GGTGCTGTCCCTATTACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCCA 808
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 650 GGTGCTGTCCCTATTACCACTGCTCAGGGAGAGGAGCTTAAGAAGCTAATTGGAGCACCT 709
Query 809 GCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGCGTGTTTGATGCAGCG 769
Query 869 ATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCC 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCC 829
Query 929 TGCTCCATCTTGTAATAGCACTCATGGAAGTCAAGAAGCTCTTTGAGATGAGGATGACAG 988
|||||||| |||||||||| |||||| |||| | || | | || |
Sbjct 830 TGCTCCATTTTGTAATAGCTCTCATG-----CAAG---C------AG--G-G--TG---G 867
Query 989 GGTGGTTTAAAAAAGTATCGCtttttcatttttgttgttgttttccgttttcatttgtGA 1048
| ||||| || |||| | ||||||||||| ||||| || |||| |||||| ||||
Sbjct 868 --T--TTTAAGAA-GTATTGGATTTTCATTTTTCTTGTT-TT--CCGTATTCATT-GTGA 918
Query 1049 TCTCTTAGT-TCCGTACAAAACGAATTGTGAGGTTAATTCAACTTCTATTTTAACTGATA 1107
||||||||| || || ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 919 TCTCTTAGTATCT-TA-AAAACGAATTGTGTGGTTAATTCAACTTCTATTTTCACTGATA 976
Query 1108 GCCGAGAAAGCT--TGTCTAGTTATTTACAAATGTTTTATCAATTGTGAT 1155
||||||| |||| ||| |||| |||||||||||||||||||||| ||||
Sbjct 977 GCCGAGAGAGCTAATGTTTAGTCATTTACAAATGTTTTATCAATTATGAT 1026
Score = 165 bits (89), Expect = 7e-40
Identities = 108/116 (93%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 179 ATATCTAGGGTTTTGAGAT-G--GTTAATTGAAAGAT-AATGGTCGAAGTTTCGGAGGAA 234
||||||||||||||||||| | |||||||||||||| |||||| |||| ||||||||||
Sbjct 115 ATATCTAGGGTTTTGAGATGGTTGTTAATTGAAAGATAAATGGTGGAAGATTCGGAGGAA 174
Query 235 TTGGCTTCACATTGTGGGTGTTTCTGG-CTTCCTCAGGTTTAAATCTGAGGTTGAT 289
||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 175 TTGGCTTCACATTGTGGGTGTTTCTGGGCT-CCTCAGGTTTAAATCTGAGGTTGAT 229
> Ahg480678 jgi|Araly1|480678|fgenesh2_kg.3__3379__AT2G17800.1
Length=1036
Score = 734 bits (397), Expect = 0.0
Identities = 560/634 (88%), Gaps = 29/634 (5%)
Strand=Plus/Plus
Query 337 agaagaagaGGCAATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGC 396
||||||||| | ||||||||| || |||||||||||||||||||||||||| || |||||
Sbjct 337 AGAAGAAGA-GAAATGAGCGCTTCGAGGTTCATAAAGTGCGTCACCGTTGGCGACGGAGC 395
Query 397 TGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGGATTATGT 456
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 396 TGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGGATTATGT 455
Query 457 TCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCT 516
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 456 ACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACGGTGAACCT 515
Query 517 TGGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCG 576
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 516 AGGATTGTGGGATACCGCAGGGCAGGAGGATTATAACAGATTAAGACCTTTGAGTTACCG 575
Query 577 TGGTGCTGATGTTTTCATTCTT-GCCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATG 635
|||||||| ||||||| |||| || |||||||| || ||||||||||||||||||||||
Sbjct 576 CGGTGCTGACGTTTTCA-TCTTAGCATTCTCTCTTATCAGTAAGGCTAGTTATGAGAATG 634
Query 636 TTTCCAAGAAGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTG 695
|||||||||||||||| || ||| ||||||||||||| |||||||||||||| || ||||
Sbjct 635 TTTCCAAGAAGTGGATCCCAGAGCTGAAGCACTATGCCCCTGGTGTCCCAATAGTTCTTG 694
Query 696 TTGGAACCAAACTAGATCTTCGAGATGACAAACAGTTTTTCATCGACCATCCTGGTGCTG 755
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||
Sbjct 695 TTGGAACCAAACTAGATCTTCGGGATGACAAACAGTTCTTCATTGACCACCCTGGCGCTG 754
Query 756 TCCCTATTACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCCAGCTTACA 815
| ||||||||||||| |||||||||||| |||||||||||||||||||| || || ||||
Sbjct 755 TACCTATTACCACTGCTCAGGGAGAGGAACTGAAGAAGCTAATTGGAGCTCCTGCATACA 814
Query 816 TCGAGTGCAGTTCAAAATCACA--AG--A-GAA-C------------------GTGAAGG 851
||||||||||||||||| |||| || | ||| | ||||| |
Sbjct 815 TCGAGTGCAGTTCAAAAACACAGGAGGCAAGAAACAAAAACTTCCCTTTTAACGTGAAAG 874
Query 852 GCGTGTTTGATGCAGCGATCAGAGTGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGA 911
| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 875 GTGTATTTGATGCAGCGATCCGAGTGGTTCTTCAACCTCCAAAGCAGAAGAAAAAGAA-A 933
Query 912 A-CAAAGCACAAAAGGCCTGCTCCATCTTGTAAT 944
| |||||||||||| ||||||||||| |||||||
Sbjct 934 AGCAAAGCACAAAAAGCCTGCTCCATTTTGTAAT 967
> Ahg937990 jgi|Araly1|937990|scaffold_502181.1
Length=745
Score = 616 bits (333), Expect = 2e-175
Identities = 514/599 (86%), Gaps = 22/599 (4%)
Strand=Plus/Plus
Query 349 AATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAAC 408
||||||||| || ||||| |||||||||| || ||||||||||||||||| || |||||
Sbjct 20 AATGAGCGCTTCGCGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAAC 79
Query 409 CTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCC-ACGGATTATGTTCCGACTGTTT 467
|||||| |||||||||| || ||||||| ||||||| ||||||||||| || || ||||
Sbjct 80 TTGTTTGTTGATTTCTTACACGAGCAACA-CTTTCCCTACGGATTATGTGCCTACCGTTT 138
Query 468 TCGATAACTTT-AGTGCAAATGTGGTTGTTAATGG-AGCCACGGTGAATCTTGGATTGTG 525
||||||| ||| ||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 139 TCGATAA-TTTCAGTGCAAATGTGGTTGTTAATGGAAG-CACTGTGAATCTTGGATTGTG 196
Query 526 GGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCTGA 585
||||||||||||||||||||| || |||||||||||||| ||||||||||||| || ||
Sbjct 197 GGATACTGCAGGGCAAGAGGATTACAACAGATTAAGACCACTGAGTTACCGTGGAGCAGA 256
Query 586 TGTTTTCATTCTTG-CCTTCTCTCTCATTAGTAAGGCTAGTTATGAGAATGTTTCCAAGA 644
|||||||||| ||| |||||||||| || ||||| || |||||||| || || ||||| |
Sbjct 257 TGTTTTCATT-TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAAA 315
Query 645 AGTGGATTCCTGAGTTGAAGCACTATGCTCCTGGTGTCCCAATTGTCCTTGTTGGAACCA 704
||||||| || |||||||| || || || ||||||||||| || ||||||||||||| |
Sbjct 316 AGTGGATCCCGGAGTTGAAACATTACGCACCTGGTGTCCCCATCATCCTTGTTGGAAC-A 374
Query 705 AA-CTAGATCTTCGAGATGACAAACAGTT-TTTCATCGACCATCCTGGTGCTGTCCCTAT 762
|| || |||||||||||||| |||||||| ||| |||||||||||||| |||||||| ||
Sbjct 375 AAGCTTGATCTTCGAGATGATAAACAGTTCTTT-ATCGACCATCCTGGCGCTGTCCCGAT 433
Query 763 TACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATTGGAGCGCC-AGCTTACATCGAGT 821
||| |||| ||| ||||||||||||| ||||| ||| ||||| || | |||||||||| |
Sbjct 434 TACTACTGCTCAAGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTA-CTTACATCGAAT 492
Query 822 GCAGTTC-AAAATCACAAGAGAACGTGAAGGGCG-TGTTTGATGCAGCGAT-CAGAGTGG 878
||||||| |||| | |||||||| ||||||| || ||||||| ||||| || | ||||||
Sbjct 493 GCAGTTCTAAAA-CTCAAGAGAATGTGAAGG-CGGTGTTTGACGCAGCCATTC-GAGTGG 549
Query 879 TCCTT-CAACCTCCAAAGCAGAAGAAAAAGAAGAACAAAGCACAAAAGGCCTGCTCCAT 936
| || ||||| || ||||||||||| ||||||| |||||| || ||||| ||||||||
Sbjct 550 TG-TTGCAACCACCGAAGCAGAAGAAGAAGAAGAGCAAAGCGCAGAAGGCATGCTCCAT 607
> Ahg491155 jgi|Araly1|491155|fgenesh2_kg.7__588__AT4G35020.1
Length=1012
Score = 392 bits (212), Expect = 3e-108
Identities = 473/595 (79%), Gaps = 33/595 (6%)
Strand=Plus/Plus
Query 335 gaag-aagaagaGGCA-ATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATG 392
|||| ||| |||| | ||||| || |||||||| || ||||| ||||| || || || |
Sbjct 187 GAAGAAAG-AGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACG 245
Query 393 GAGCTGTTGGTAAA-ACCTGTTTGCTGATTTCTTATACCAGCAACACCTTT-CCCACGGA 450
| |||||||| ||| || |||||||| || || || || ||||||| |||| ||||||||
Sbjct 246 GTGCTGTTGG-AAAGACTTGTTTGCTCATCTCCTACACTAGCAACA-CTTTCCCCACGGA 303
Query 451 TTATGTTCCGACTGTTTTCGATAACTTT-AGTGCAAATGTGGTTGTTA-AT-GGAGCCAC 507
|||||| || ||||| |||||||| ||| ||||| |||||| ||| || || ||| |||
Sbjct 304 TTATGTGCCAACTGTGTTCGATAA-TTTCAGTGCCAATGTGATTG-TAGATGGGA-ACAC 360
Query 508 GGTGAATCTT-GGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTT 566
| || ||| |||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 361 TATCAA-CTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTT 419
Query 567 TGAGTTACCGTGGTGCTGATGTTTTCATT-CTTGCCTTCTCTCTCATTAGTAAGGCTAGT 625
|||| || || ||||| ||||| ||| || ||||| ||||||||| |||| || |||||
Sbjct 420 TGAGCTATCGCGGTGCAGATGTCTTC-TTACTTGCATTCTCTCTCGTTAGCAAAGCTAGC 478
Query 626 TATGAGAATGTTTCCAAGAAGTGGATTCCTGAGTTGA-AGCACTATGCTCCTGGTGT-CC 683
||||| |||||||| || |||||| ||||||| ||| | || |||||||||||||| ||
Sbjct 479 TATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGA-CATTATGCTCCTGGTGTTCC 537
Query 684 CAATTGTCCTTGTTGGAACCAAA-CTAGATCTTCGAGATGACAAACAGTT-TTT-CATCG 740
|| | |||| |||||||| ||| || |||||||||||||| || || || ||| | ||
Sbjct 538 CA-TCATCCTCGTTGGAAC-AAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGC--CG 593
Query 741 ACCATCCTGGTGCTGTCCCTAT-TACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATT 799
| || ||||||||||| ||||| | | || | |||||| || || || |||||||| |||
Sbjct 594 AGCACCCTGGTGCTGTGCCTATCT-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATT 652
Query 800 GGAGCGCCAGCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGC-GTGTT 858
|| || || ||||| || || |||||| ||||| | ||| |||| || || | | |||||
Sbjct 653 GGGGCACCTGCTTATATTGAATGCAGTGCAAAAACTCAACAGAATGTAAAAG-CAGTGTT 711
Query 859 TGATGCAGCGATCAGAG-TGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAA 912
|||||| || |||| || | || || || || ||||| | ||||| ||||||||
Sbjct 712 TGATGCGGCTATCA-AGGTCGTTCTCCAGCCACCAAAAAACAAGAAGAAGAAGAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5