BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35970.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491040 jgi|Araly1|491040|fgenesh2_kg.7__473__AT4G35970.1 1511 0.0
Ahg923244 jgi|Araly1|923244|scaffold_104525.1 265 5e-70
Ahg949602 jgi|Araly1|949602|scaffold_801489.1 176 3e-43
Ahg920617 jgi|Araly1|920617|scaffold_101898.1 176 3e-43
> Ahg491040 jgi|Araly1|491040|fgenesh2_kg.7__473__AT4G35970.1
Length=981
Score = 1511 bits (818), Expect = 0.0
Identities = 931/984 (95%), Gaps = 14/984 (1%)
Strand=Plus/Plus
Query 1 ATTCATCGGTCTGAGTTATTTTGCTTGCTCTTTGAAATTC-TGACAATGGCAGTGAACGT 59
|||||| | ||||||||||||| |||||||||| ||| | ||||||||||||||||| |
Sbjct 1 ATTCATTGATCTGAGTTATTTTACTTGCTCTTTCAAA-GCTTGACAATGGCAGTGAACAT 59
Query 60 TGATGCAGAGTACCTCAAAGAGATAGAGAAAACTCGTAGAGACCTTCGAGCTCTCATCTC 119
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 60 TGATGCAGAGTACCTCAAAGAGATAGAGAAGACTCGTAGAGACCTTTGAGCTCTCATCTC 119
Query 120 TTCCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGA 179
Query 180 TGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATCAGATTCAAGGAAGAGCTAAACCG 239
|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||
Sbjct 180 TGCCAAGAAGAAAACCGGAGGTCCCAATGGATCAATCAGGTTCAAGGAAGAGCTAACCCG 239
Query 240 TCCACACAACAAAGGTTTGGAGAAGGCAGTCGCCTTCTGCGAGGAAGTAAAGGCTAAGCA 299
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 240 TCCACACAACAAGGGTTTGGAGAAGGCAGTCGCTTTTTGCGAGGAAGTAAAGGCTAAGCA 299
Query 300 TCC-CAGAGTCTCTTACGCAGACCTTTATCAGCTCGCTGGAGTTGTTGCAGTGGAGGTTA 358
||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TCCGC-GAGTCTCTTACGCAGACCTCTATCAGCTCGCTGGAGTTGTTGCAGTGGAGGTTA 358
Query 359 CTGGCGGCCCTGCAATCCCATTTACACCAGGCCGTAAGGATGCTGATTCCGCGGACGATG 418
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 359 CTGGCGGCCCTGCAATCCCATTTACACCAGGCCGTAAGGATGCTGATTCCCCGGACGACG 418
Query 419 GAGAACTTCCAAATCCAAATGAAGGTGCCTCACATTTAAGAACTCTCTTCTCTCGTATGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGAACTTCCAAATCCAAATGAAGGTGCCTCACATTTAAGAACTCTCTTCTCTCGTATGG 478
Query 479 GTCTATTGGATAGAGACATTGTAGCTCTCTCTGGAGGTCACACTTTGGGACGTGCACATA 538
|||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 GTCTATCGGATAGAGACATTGTGGCTCTCTCTGGAGGTCACACTTTGGGGCGTGCACATA 538
Query 539 AGGAGAGATCAGATTTTGAAGGTCCTTGGACACAGGACCCTCTCAAGTTTGATAACTCGT 598
||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 AGGAGAGGTCAGATTTCGAAGGTCCTTGGACACAAGATCCTCTCAAGTTTGATAACTCAT 598
Query 599 ATTTCGTAGAGCTTCTAAAAGGGGAGACTCCGGGATTGCTACAACTTAAAACCGACAAGG 658
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 599 ATTTCGTAGAGCTTCTAAAAGGGGAGACTCCTGGATTGCTACAACTGAAAACCGACAAGG 658
Query 659 CTCTACTTGATGATCCCAAGTTCCACCCTTTTGTTAAGCTGTATGCAAAGGACGAGGATA 718
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 CTCTACTTGATGATCCAAAGTTCCACCCTTTTGTTAAGCTTTATGCAAAGGACGAGGATA 718
Query 719 TGTTCTTCAAAGCCTATGCAATTTCACACAAGAAACTCTCAGAACTAGGATTTAATCCGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTTCTTCAAAGCCTATGCAATTTCACACAAGAAACTCTCAGAACTAGGATTTAATCCGC 778
Query 779 CAAGAAGAATTCCTTCAGCAGTGACGCAGCAGACGCTTGGAATCGCTGTTGCTGCAGCTG 838
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 CAAGAAGAATTCCTTCAGCAGTGACGGAGCAGACGCTTGGAATCGCTGTTGCTGCAGCTG 838
Query 839 TGGTGATCTTTACAATATGCTATGAAGCAAGCAGAAGAGGCAAGTGAGGAAGTTTCGCAG 898
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 839 TGGTGATCTTTACCATATGCTACGAAGCAAGCAGAAGAGGCAAGTGAGGAGGTTTTACAG 898
Query 899 ATGCAATAA-GGGACGAGAGAAAAAT--------GTTAATTGAATGTATGCAATAAATAC 949
|||| ||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 899 ATGCG-TAAAGGGACAAGAGAAAAATTTTCAAATGTTAATTGAATGTATGCAATAAATAG 957
Query 950 AAAGATTCATGCAATGTTACCTCC 973
||||||||||||||||||||||||
Sbjct 958 AAAGATTCATGCAATGTTACCTCC 981
> Ahg923244 jgi|Araly1|923244|scaffold_104525.1
Length=202
Score = 265 bits (143), Expect = 5e-70
Identities = 147/149 (99%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 122 CCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGATG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAGAAACTGTGCTCCCATTATGCTCCGTCTTGCATGGCATGATGCAGGAACCTATGATG 60
Query 182 CCAAGAAGAAAACCGGAGGTGCCAATGGATCTATCAGATTCAAGGAAGAGCTAAACCGTC 241
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAGGTTCAAGGAAGAGCTAAACCGTC 120
Query 242 CACACAACAAAGGTTTGGAGAAGGCAGTC 270
|||||||||||||||||||||||||||||
Sbjct 121 CACACAACAAAGGTTTGGAGAAGGCAGTC 149
> Ahg949602 jgi|Araly1|949602|scaffold_801489.1
Length=338
Score = 176 bits (95), Expect = 3e-43
Identities = 102/105 (97%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 169 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATC-AGATTCAAGGA 227
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 201 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAAG-TTCAAGGA 259
Query 228 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 272
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 304
> Ahg920617 jgi|Araly1|920617|scaffold_101898.1
Length=338
Score = 176 bits (95), Expect = 3e-43
Identities = 102/105 (97%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 169 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTGCCAATGGATCTATC-AGATTCAAGGA 227
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 201 GGAACCTATGATGCCAAGAAGAAAACCGGAGGTCCCAATGGATCTATCAAG-TTCAAGGA 259
Query 228 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 272
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 AGAGCTAAACCGTCCACACAACAAAGGTTTGGAGAAGGCAGTCGC 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5