BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35985.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888459 jgi|Araly1|888459|Al_scaffold_0007_445 2037 0.0
> Ahg888459 jgi|Araly1|888459|Al_scaffold_0007_445
Length=1623
Score = 2037 bits (1103), Expect = 0.0
Identities = 1267/1346 (94%), Gaps = 12/1346 (1%)
Strand=Plus/Plus
Query 1 ATGGAATGCTCTGCAACTCCTCCCAAGCTTTATCCAACCGTCGACACTTCAACCACCGTT 60
||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGAATGCTCTGCAACTCGTCCCAAGCTTTACCCAACCGTCGACACATCAACCACCGTT 60
Query 61 Gctcctctccctaagtcctcttcctcctcctcttctactaataataataatctctatcct 120
|||||||||||||| ||||| | |||||||||| ||| ||||||||||||||||||
Sbjct 61 GCTCCTCTCCCTAATTCCTC-T--TCCTCCTCTTGTAC---TAATAATAATCTCTATCCG 114
Query 121 TCAATCAATGTCAATGATCTTGTCAACAATATCTTCCCCGATCCCACCGCCTCTGACTCA 180
|| ||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 115 TCCATCGATGTGAATGATCTTGTCAACAATATCTTCCCGGATCCCACCGCTTCTGACTCA 174
Query 181 GCTTCAGCGCCTCCTC-TCGCGACGGAGGAAGTGATTCTCACAATCCACGGCGCGATGGT 239
|||||||| ||||| | | |||||||||||||||||||| ||||||||||| |||||| |
Sbjct 175 GCTTCAGCTCCTCC-CATGGCGACGGAGGAAGTGATTCTGACAATCCACGGTGCGATGCT 233
Query 240 CCACCTCATTGACAAATCCTACAGCGTAGAGCTCGCTTGCGGCGATCTCGAGATTCTCCG 299
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 234 CCACCTGATCGACAAATCCTACAGCGTGGAGCTCGCTTGCGGCGATCTCGAGATTCTCCG 293
Query 300 TCTTGTTCAAGGAGATATCACCGTCGCGGTTTTCGCTCGCGTCGGTGACGAGATCCAATG 359
|||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||
Sbjct 294 TCTTGTTCAAGGAGATATCACCGTGGCGGTTTTCGCGCGCGTCACTGATGAGATCCAATG 353
Query 360 GCCGTTGACTAAAGACGAACCCGCCGTTAAAGTCGATGAGTCTCATTACTTCTTCTCGCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GCCGTTGACTAAAGACGAACCCGCCGTTAAAGTCGATGAGTCTCATTACTTCTTCTCGCT 413
Query 420 CCGACCCGTTAAAGAATCCGAGTCATCGGATCATTCAGTCAACGAAACAGAGAACGAGAT 479
|||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||
Sbjct 414 CCGACCCGTTAAAGAATCCGGGTCGTCGGATCATTCAATCAACGAAGCAGAGAACGAGAT 473
Query 480 GTTGAACTACGGATTAACAATGGCTTCGAAAGGTCAAGAACCGATGCTTGAGAAGCTAGA 539
||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||
Sbjct 474 GTTGAACTACGGATTAACAATCGCTTCCAAAGGTCAAGAACCGTTGCTGGAGAAGCTAGA 533
Query 540 CAAGATCTTAGCTGATTACAGTAGTTTCACAGCGGAGGAGAAACAGAAAGAAGAGAACGT 599
|||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 534 CAAGATCTTAGCGGACTACAGCAGTTTCACGGCGGAGGAGAATCAGAAAGAAGAGAACGT 593
Query 600 TTTGGATTTGACGGCGGCGAAGGAGACTTCACCGGAGGAGCTGAAGGGAAAGAGGAAAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTTGGATTTGACGGCGGCGAAGGAGACTTCACCGGAGGAGCTGAAGGGAAAGAGGAAAAA 653
Query 660 GATGGTGGAGAAGCAGTGTACGGCTTATTGGACGACTCTGGCTCCGAATGTTGAGGATTA 719
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGGTGGAGAAGCAATGTACGGCTTATTGGACGACTCTGGCTCCGAATGTTGAGGATTA 713
Query 720 CAGTGGCGTTGCAGCGAAACTGATCGCTGCTGGTTCTGGTCAATTGATTAAAGGGATCTT 779
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 714 CAGTGGCGTTGCAGCGAAACTGATCGCTGCCGGTTCTGGTCAATTGATAAAAGGGATCTT 773
Query 780 ATGGTGTGGGGATCTCACAATGGATAGACTCATGTGGGGAAATGATTTCATGAAGAAGAA 839
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 774 ATGGTGTGGTGATCTCACAATGGATAGGCTCATGTGGGGAAATGATTTCATGAAGAAGAA 833
Query 840 GTTGTCCAAAGCAGAGAAGGAGAGACAAGTTAGTCCTGGAACTTTGAAACGTCTCAAAAG 899
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTTGTCTAAAGCAGAGAAAGAGAGACAAGTTAGTCCTGGAACTTTGAAACGTCTCAAAAG 893
Query 900 AGTAAAGAAGATGACAAAAATGACAGAGAAAGTGGCGAATGGTGTGCTCTCTGGTGTTGT 959
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 894 AGTGAAGAAGATGACAAAAATGACAGAGAAAGTGGCTAATGGTGTGCTCTCTGGTGTTGT 953
Query 960 TAAAGTTTCTGGATTCTTCTCGAGTTCAGTGATAAATAGCAAAGCTGGGCAGAAACTCTT 1019
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 954 TAAAGTTTCTGGATTCTTTTCGAGTTCAGTGATAAACAGCAAAGCTGGGCAGAAACTCTT 1013
Query 1020 TGGGCTTCTTCCTGGAGAAATGGTTCTTGCAACACTTGATGGATTCAACAAGGTTTGTGA 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGGTCTTCTTCCTGGAGAAATGGTTCTTGCAACACTTGATGGATTCAACAAGGTTTGTGA 1073
Query 1080 TGCTGTCGAAGTAGCAGGAAG-ACACGTTATGAAAACAACTTC-AGATGTAACTACTGAA 1137
|||||| |||||||| ||||| | |||||||||||||| |||| | ||| |||| |||
Sbjct 1074 TGCTGTTGAAGTAGCGGGAAGGA-ACGTTATGAAAACATCTTCCAC-TGTCGCTACCGAA 1131
Query 1138 ATCGTCGATCACAAGTATGGAGCAAAGACAGCACAAGCGACAAACGAAGGGCTTAGCGCA 1197
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1132 ATCGTCGATCACAAGTATGGAGCAAAGACAGCACAGGCGACAAATGAAGGGCTTAGCGCA 1191
Query 1198 GCAGGGCATGCTTTTGGAACGGCGTGGACTGTTTTCAAGATTAGACAAGCTCTTAACCCC 1257
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1192 GCAGGGCATGCTATTGGAACGGCGTGGACCGTTTTCAAGATCAGACAAGCTCTTAACCCC 1251
Query 1258 AAGAGTGCCATGAAGCCATCATCACTCGCTAAAACCGTAGTTAAAACGGCAGCTAAAGAG 1317
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1252 AAGAGTGCCATGAAGCCATCATCACTCGCTAAAACCGCAATTAAAACGGCAGCTAAAGAG 1311
Query 1318 AGAAAGAAGGGGaaaaaaaGTTCTAA 1343
| ||||||||||||||| | ||||||
Sbjct 1312 AAAAAGAAGGGGAAAAAGACTTCTAA 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5