BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G35987.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328155 jgi|Araly1|328155|fgenesh1_pm.C_scaffold_7000382 1384 0.0
> Ahg328155 jgi|Araly1|328155|fgenesh1_pm.C_scaffold_7000382
Length=927
Score = 1384 bits (749), Expect = 0.0
Identities = 856/908 (94%), Gaps = 6/908 (1%)
Strand=Plus/Plus
Query 104 CTTCTTCTTCTTCCTCTGCTCTTAGATGGAAAATTCTTCGCCAAGCGCTTCTCCGTAGAT 163
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 23 CTTCTTCTTCTTCCTCTGCTCTTAGATGGAAAATTCTTCGTCAAGCGCTTCTCCGTAGAT 82
Query 164 CTGATTCTCAATCTCAAACTGAGACCAAACGGATTTCAAGGAAAGCAACTCAAGGATTCA 223
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 83 CTGATTCTCAATCTCAAGCTGAGACCAATCGGATTTCAAGGAAAGCAACTCAAGGATTCA 142
Query 224 ACTTGATTCCTTGTCAAGTGGTGGACTCTTCTCCTCAATCGGATAAGTCTCGTGAAGCAT 283
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 143 ACTTGATTCCTTGTCATGTGGTGGATTCTTCTCCGCAATCGGATAAGTCTCGTGAAGCAT 202
Query 284 -CCGTTTGCTACACACTTCCCATCACTGGCTCTCCCAAACTCTATCTAACACAAAGAGTG 342
|| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 203 GCC-TTTGCTACACAATTCCCATCACTGGCTCTCCGAAACTCTATCTAACACAAAGAGTG 261
Query 343 GATAATTGTAGTGATCTCAATGACTTCGAGATATCTAATCGATACAACATTGATAATACT 402
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 262 GATAATTGCAGTGATCTCAATGACTTTGAGATATCTAATCGATACAACATTGATAACACT 321
Query 403 GGACTTGTCTGTCAGTGGCCCTCTGAAGAAGTACTAGCCTACTTTTGCAAGTCTCAGCCA 462
|||||||||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||
Sbjct 322 GGACTTGTCTGTCAATGGCCCTCAGAAGAAGTTCTAGCATACTTTTGCATGTCTCAGCCA 381
Query 463 GAACGTTTCAGAGGTAAAAGAGTAATTGAGCTTGGATCAGGGTATGGATTAGCCGGTTTA 522
|| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 GATCGATTCAGAGGCAAAAGAGTAATTGAGCTTGGATCGGGGTATGGATTAGCCGGTTTA 441
Query 523 GTTATTGCAGCTG-CAACCGAGGCATCAGAAGTGGTAATCTCCGATGGAAACCCCCAAGT 581
||||||||||||| | |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 442 GTTATTGCAGCTGTC-ACCGAGGCATCACAAGTGGTAATCTCAGATGGAAATCCCCAAGT 500
Query 582 AGTCAATTATATTAAACGTAACATAGAAACCAACTCCATGGCATTTGGTGGCACAAGCGT 641
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 501 AGTCAATTATATTAAGCGTAACATAGAATCCAACTCCATGGCATTTGGTGGCACAAGCGT 560
Query 642 AAAAGCCATGGAGTTGCACTGGAATCAGCATCAACTTTCAGAGTTAACCAACACTTTCGA 701
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 561 AAAAGCCATGGAGTTGCACTGGAATCAGCATGAACTTTCAGAGTTAACCAACACTTTCGA 620
Query 702 CATCATAGTTGCAAGCGATTGTACATTTTTCAAGGAATTTCATAAGGACCTTGCGAGAAC 761
|||||||||||||||||||||||||||||||||||||||||||||| | || || |||||
Sbjct 621 CATCATAGTTGCAAGCGATTGTACATTTTTCAAGGAATTTCATAAGCATCTCGCAAGAAC 680
Query 762 CATCAAGATGCTGCTTAAAGCCAAAAAAGCCTCCGAAGCATTATTTTTCAGTCCTAAGAG 821
||||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||
Sbjct 681 CATCAAGATGCTGCTTAAAGCCAAAGAACCCTCGGAAGCACTATTTTTCAGTCCTAAAAG 740
Query 822 AGGTGACTCCTTGGAAAAGTTCATGAAGGAGATT-AAGGACATTGGTTTACACTACATTT 880
|||||||||||| || |||||| ||||||||||| ||| |||||||||||||||||| |
Sbjct 741 AGGTGACTCCTTAGATAAGTTCTTGAAGGAGATTGAAG-ACATTGGTTTACACTACAACT 799
Query 881 TAACTGAAAACTACGATGCACAAGTTTGGAAGCGCCATGAGACGCTTGTGAAAGGAGACG 940
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 800 TAACCGAAAACTACGATGCACAAGTTTGGAAGCGCCATGAGACACTTGTGAAAGGAGACG 859
Query 941 AAGCTTGGCCTAACTATGACAAGAATCATTGCTACCCTTTACTTATTCAAATTACTAATC 1000
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 860 ACGCTTGGCCTAACTATGACAAGAATCATTGCTACCCTTTACTTATTCAAGTTACGAATC 919
Query 1001 AGATTTAG 1008
| ||||||
Sbjct 920 ATATTTAG 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5