BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36000.1 Length=1043 Score E Sequences producing significant alignments: (Bits) Value Ahg328154 jgi|Araly1|328154|fgenesh1_pm.C_scaffold_7000381 510 7e-144 > Ahg328154 jgi|Araly1|328154|fgenesh1_pm.C_scaffold_7000381 Length=573 Score = 510 bits (276), Expect = 7e-144 Identities = 325/349 (93%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 491 AGACTTTTATGATGTCAGCCTTGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC 550 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 219 AGACTTTTATGATGTCAGCCTCGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC 278 Query 551 TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACGGAGCT 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 279 TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACAAAGCT 338 Query 611 CAAAGCCAAGAG-GAGTTTGGCTTGTAGAAGTGCGTGTGAGGCGTTTGGAAGACCGGAAT 669 ||||||||||| | ||||||| |||||||||||||||||||||||||||| || || | Sbjct 339 AAAAGCCAAGAGCG-GTTTGGCATGTAGAAGTGCGTGTGAGGCGTTTGGAACCCCAGAGT 397 Query 670 ATTGCTGCAGTGGCGCATACGGTTCACCAGATAGCTGCAAGCCGTCGATGTACTCACAAG 729 |||||||||||||||||||||||||||| | || ||||||||||||||| || || |||| Sbjct 398 ATTGCTGCAGTGGCGCATACGGTTCACCTGGTACCTGCAAGCCGTCGATATATTCTCAAG 457 Query 730 TTTTTAAGTCAGCTTGTCCTAAATCGTACAGTTACGCGTATGATGATGCCACAAGTACTT 789 | ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 458 TCTTTAAATCAGCTTGTCCTAAATCGTACAGCTACGCGTACGATGATGCCACAAGTACTT 517 Query 790 TCACTTGTAGTGGTGCTGATTACACCATCACTTTTTGTCCCAAATTGTC 838 |||||||||||| ||||||||||||||||||||| |||||||| ||||| Sbjct 518 TCACTTGTAGTGATGCTGATTACACCATCACTTTCTGTCCCAACTTGTC 566 Score = 230 bits (124), Expect = 2e-59 Identities = 140/148 (95%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 174 GGTGTTAAGTGTACAACGTTCACGCTAGTTAACAAATGCGATTTCCCAGTGTGGCCAGGG 233 ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 73 GGTGTCAAGTGTACAACGTTCACGCTCGTTAACAAATGCGATTTCCCGGTGTGGCCAGGG 132 Query 234 ATTTTATCCGGTTCAGGTAGTCCCAAACTCGATTCCACTGGATTCGAGCTCTCCAAAGAT 293 ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| Sbjct 133 ATTTTATCCGGTTCAGGTAGTCCCAAACTTGATACCACCGGATTCGAGCTCTCCAAAGAT 192 Query 294 ACCTCTCGCACTTTCCGAGCACCTGCAG 321 |||||||||||||| |||||||| |||| Sbjct 193 ACCTCTCGCACTTTTCGAGCACCCGCAG 220 Score = 117 bits (63), Expect = 2e-25 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 1 ATGGCTCTGTTCAGTCTCCATCTCCCACGTTACGCCTCTGTTCTTGGATTTATCCTCTTG 60 |||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTGTCCCGTCTCCATCTCCCACCTTACGCCTCTGTTCTTGGATTTATCCTCTTG 60 Query 61 CTGCTCCGTGATGGT 75 |||||||||||||| Sbjct 61 TTGCTCCGTGATGGT 75 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38809129506 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5