BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G36000.1

Length=1043
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328154 jgi|Araly1|328154|fgenesh1_pm.C_scaffold_7000381           510    7e-144


> Ahg328154 jgi|Araly1|328154|fgenesh1_pm.C_scaffold_7000381
Length=573

 Score =  510 bits (276),  Expect = 7e-144
 Identities = 325/349 (93%), Gaps = 2/349 (1%)
 Strand=Plus/Plus

Query  491  AGACTTTTATGATGTCAGCCTTGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC  550
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  219  AGACTTTTATGATGTCAGCCTCGTTGATGGCTATAACCTCCCCATGATCGTGGAGGGTTC  278

Query  551  TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACGGAGCT  610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  279  TGGTTTGTGCCCCACCACAGGGTGTGTCACGGACTTAAACCAGAATTGCCCAACAAAGCT  338

Query  611  CAAAGCCAAGAG-GAGTTTGGCTTGTAGAAGTGCGTGTGAGGCGTTTGGAAGACCGGAAT  669
             ||||||||||| | ||||||| ||||||||||||||||||||||||||||  || || |
Sbjct  339  AAAAGCCAAGAGCG-GTTTGGCATGTAGAAGTGCGTGTGAGGCGTTTGGAACCCCAGAGT  397

Query  670  ATTGCTGCAGTGGCGCATACGGTTCACCAGATAGCTGCAAGCCGTCGATGTACTCACAAG  729
            |||||||||||||||||||||||||||| | || ||||||||||||||| || || ||||
Sbjct  398  ATTGCTGCAGTGGCGCATACGGTTCACCTGGTACCTGCAAGCCGTCGATATATTCTCAAG  457

Query  730  TTTTTAAGTCAGCTTGTCCTAAATCGTACAGTTACGCGTATGATGATGCCACAAGTACTT  789
            | ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  458  TCTTTAAATCAGCTTGTCCTAAATCGTACAGCTACGCGTACGATGATGCCACAAGTACTT  517

Query  790  TCACTTGTAGTGGTGCTGATTACACCATCACTTTTTGTCCCAAATTGTC  838
            |||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct  518  TCACTTGTAGTGATGCTGATTACACCATCACTTTCTGTCCCAACTTGTC  566


 Score =  230 bits (124),  Expect = 2e-59
 Identities = 140/148 (95%), Gaps = 0/148 (0%)
 Strand=Plus/Plus

Query  174  GGTGTTAAGTGTACAACGTTCACGCTAGTTAACAAATGCGATTTCCCAGTGTGGCCAGGG  233
            ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct  73   GGTGTCAAGTGTACAACGTTCACGCTCGTTAACAAATGCGATTTCCCGGTGTGGCCAGGG  132

Query  234  ATTTTATCCGGTTCAGGTAGTCCCAAACTCGATTCCACTGGATTCGAGCTCTCCAAAGAT  293
            ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct  133  ATTTTATCCGGTTCAGGTAGTCCCAAACTTGATACCACCGGATTCGAGCTCTCCAAAGAT  192

Query  294  ACCTCTCGCACTTTCCGAGCACCTGCAG  321
            |||||||||||||| |||||||| ||||
Sbjct  193  ACCTCTCGCACTTTTCGAGCACCCGCAG  220


 Score =  117 bits (63),  Expect = 2e-25
 Identities = 71/75 (95%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  1   ATGGCTCTGTTCAGTCTCCATCTCCCACGTTACGCCTCTGTTCTTGGATTTATCCTCTTG  60
           |||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1   ATGGCTCTGTCCCGTCTCCATCTCCCACCTTACGCCTCTGTTCTTGGATTTATCCTCTTG  60

Query  61  CTGCTCCGTGATGGT  75
            ||||||||||||||
Sbjct  61  TTGCTCCGTGATGGT  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38809129506


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5