BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36010.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944275 jgi|Araly1|944275|scaffold_700504.1 1426 0.0
Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170 490 1e-137
> Ahg944275 jgi|Araly1|944275|scaffold_700504.1
Length=949
Score = 1426 bits (772), Expect = 0.0
Identities = 892/950 (94%), Gaps = 7/950 (1%)
Strand=Plus/Plus
Query 146 TCTGGTGACTCTCTGCTCTAATGGGTCAATCTCAAGTTTCTCTCTTTCTTCTTCTAATTC 205
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1 TCTGGTGACTCTCTGCTCTAATGGGTCAATTTCAAGTTTCTTTCTTTCTTCTTCTAATTC 60
Query 206 TTGTTTTCATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAGCTACA 265
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TTGTTTTAATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGCAGCTACA 120
Query 266 CCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCTACAACCGGATTCT 325
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCAACAACCGGATTCT 180
Query 326 CCTTAAACCCTACCGAGACACGAGTTATCCCGATCCCCGCAGCTTGGTCCGGTCGTATTT 385
|||||||||| ||||||||||| || ||||| |||||||| || |||||||| ||||| |
Sbjct 181 CCTTAAACCCGACCGAGACACGTGTCATCCCAATCCCCGCCGCCTGGTCCGGCCGTATAT 240
Query 386 GGGGTCGTACTCTCTGCACACAAGACGCAACCACC-GGAAGATTCACTTGCATCACCGGG 444
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 241 GGGGTCGTACTCTCTGCACACAAGACGCAACCACCGGGAA-ATTCACTTGCATCACCGGA 299
Query 445 GACTGTGGTTCTTCCACCGTAGAATGCTCCGGATCCGGTGCTGCACCTCCGGCTACACTC 504
|||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 300 GACTGTGGTTCTTCCACCGTAGAATGCTCCGGATCCGGGGCTGCACCGCCTGCGACACTC 359
Query 505 GCTGAATTCACCTTAAACGGAGCTAATGGTCTCGATTTCTACGACGTCAGTCTCGTCGAC 564
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 360 GCAGAATTCACCTTGAACGGAGCCAATGGCCTCGATTTCTACGACGTCAGTCTCGTCGAC 419
Query 565 GGTTACAACATCCCGATGACCATCGTCCCTCAGGGTGGAGGAGATGCCGGAGGCGTCGCC 624
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 420 GGTTACAACATCCCGATGACCATCGTCCCTCAGGGAGGCGGAGATGCAGGAGGCGTCGCC 479
Query 625 GGAAACTGTACGACAACCGGCTGCGTTGCGGAGCTCAACGGTCCATGTCCTGCTCAGCTG 684
|| ||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 480 GGGAACTGCACGACCACCGGCTGCGTTGCGGAGCTTAACGGTCCGTGTCCTGCTCAGCTG 539
Query 685 AAAGTGGCGACGACGGGAGCTGAAGGAGTAGCTTGCAAAAGCGCGTGTGAAGCGTTTGGA 744
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 AAAGTGGCGACGACGGGAACTGAAGGAGTAGCTTGCAAAAGCGCGTGTGAGGCGTTTGGG 599
Query 745 ACGCCGGAGTACTGCTGTAGCGGCGCGTTTGGAACGCCGGACACGTGTAAGCCAAGCGAG 804
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 ACGCCGGAGTATTGCTGTAGCGGCGCGTTTGGAACGCCGGACACGTGTAAGCCGAGCGAG 659
Query 805 TACTCACAGTTTTTCAAAAACGCGTGCCCGAGAGCTTATAGTTACGCTTACGACGACGGA 864
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 TACTCGCAGTTCTTCAAAAACGCGTGTCCGAGAGCTTATAGTTACGCTTACGACGACGGA 719
Query 865 ACTAGTACCTTCACTTGTGGCGGAGCTGATTACGTCATCACTTTCTGTCCTTCTCCTAAC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTAGTACCTTCACTTGTGGCGGAGCTGATTACGTCATCACTTTCTGTCCTTCTCCTAAC 779
Query 925 CCAAGTGTGAAGAGTGCAACGAAGGGAGTCCAACCCGTAGCTGTTAGCTACTCTAAGGCA 984
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 780 CCAAGTGTAAAGAGTGCAACGAAGGGACTCCAACCCGAAGCTGTTAGCTACTCTACGGCA 839
Query 985 TCTCCAAACGCGTCGCCAACTCTTTCTGCCGTGTTTTCGATTGGCGTTTTGGCTGTCGC- 1043
||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 840 TCTCCAAACGCGTCGCCAACTATCTCTGCCGTGTTTTCGATTGGCGTTTTGGCTTTCGCC 899
Query 1044 G--TCTTGGGTGATGCAACGCGTTTTGTGATTCATGTACGGCTG-CGTTT 1090
| ||||||| |||||||| |||| ||||| | |||||||| | |||||
Sbjct 900 GCGTCTTGGGCGATGCAACTTGTTTGGTGATCCCTGTACGGC-GACGTTT 948
> Ahg343407 jgi|Araly1|343407|fgenesh1_pg.C_scaffold_3003170
Length=897
Score = 490 bits (265), Expect = 1e-137
Identities = 597/751 (79%), Gaps = 48/751 (6%)
Strand=Plus/Plus
Query 202 ATTCTTG-TTTTCATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAG 260
|||| || |||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 37 ATTC-TGTTTTTCATCAATGGTGGTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAA 95
Query 261 CTACACCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCTACAACCGG 320
|||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 96 CTACACCGTCTGGCCTGGACTTCTCTCCGGCGCCGGCACCACTCCATTACCAACCACCGG 155
Query 321 ATTCTCCTTAAACCC-TACCGAGACACGAGTTATC-CCGATCCCCGCAGCTTGGTCCGGT 378
|||||| | | | | | ||||| ||||| | ||| || || ||||| || ||||||||
Sbjct 156 TTTCTCCCTCAGCTCGT-CCGAGTCACGACTCATCTCC-ATACCCGCCGCCTGGTCCGGC 213
Query 379 CGTATTTGGGGTCGTACTCTCTGCACAC-AAGACGC-AACCACCGGAAGATTCACTTGCA 436
|| || ||||| || || ||||||| || || ||| ||| ||||||| ||||||||||
Sbjct 214 CGCATATGGGGACGCACGCTCTGCA-ACCAAAACGAGAAC-ACCGGAAAATTCACTTGCG 271
Query 437 TCACCGGGGACTGTGGTTCTTCC-ACCGTAGAATGCTCCGGATCCGGTGC--TGCACCTC 493
||||||| |||||||| || ||| | | |||||||||||| | || || | | ||||
Sbjct 272 TCACCGGCGACTGTGGCTCATCCCAAA-TCGAATGCTCCGGAGCAGGAGCAAT-C-CCTC 328
Query 494 CGGCTACACTCGCTGAATTCAC-CTTAAACGGAG-CT-AATGGTCTCGATTTCTACGACG 550
| |||||| | || || ||||| || || ||| | | || |||||||||| |||||
Sbjct 329 CAGCTACATTAGCCGAGTTCACACTCAA-CGGCGACGGAAAC--CTCGATTTCTTCGACG 385
Query 551 TCAGTCTCGTCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGTGGAGGAGATG 610
|||| |||||||| || |||||| |||| ||||| ||||||||||| || |||| ||
Sbjct 386 TCAGCCTCGTCGATGGCTACAACGTCCCAATGACGATCGTCCCTCACGGCGGAGCT-ATT 444
Query 611 CCGGAGGCGTCGCCGGAAACTGTA-CGACAACCGGCTGCGTTGCGGAGCTCAACGGTCC- 668
|||| ||| | || |||| || |||| || |||| | ||| || ||||| |
Sbjct 445 --GGAG---TCG--GTAAG-TGTAACG-CAACGGGTTGCGCGGTGGATCTTAACGG-CGT 494
Query 669 ATGTCCTGCTCAGCTGAAAGTGGC-GACGA--CGGGAGCTGAAGGAGTAGCTTGCAAAAG 725
|||||| | ||||||||||| | | || ||||| | | | ||||| ||||| ||
Sbjct 495 ATGTCCGGAACAGCTGAAAGTAACAGTTGAAGCGGGAACGGCTGCTGTAGCGTGCAAGAG 554
Query 726 CGCGTGTGAAGCGTTTGGAACGCCGGAGTACTGCTGTAGCGGCGCGTTTGGAACGCCGGA 785
||| || || ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 555 CGCTTGCGAGGCGTTTGGAACGCCGGAGTTTTGCTGTAGTGGCGCGTTTGGAACGCCGGA 614
Query 786 CACGTGTAAGCCAAGCGAGTACTCACAGTTT-TTCAA-AAACGCGTGCCCGA-GAGCTTA 842
|||||||||||| || |||||||| |||| ||||| ||| || || |||| | |||||
Sbjct 615 CACGTGTAAGCCGAGTGAGTACTCTG-GTTTCTTCAAGAAA-GCTTGTCCGACG-GCTTA 671
Query 843 TAGTTACGCTTACGACGACGGAACTAGTACCTTCACTTG-TGGCGGAGCTGATTACGTCA 901
||||||||||||||||||||| || || || || ||||| | ||| |||||||||||||
Sbjct 672 TAGTTACGCTTACGACGACGGTACAAGCACTTTTACTTGCTC-CGGTGCTGATTACGTCA 730
Query 902 TCACTTTCTGTCCTTCTCCTAACC-CAAGTG 931
|||||||||||||||||||| || ||||||
Sbjct 731 TCACTTTCTGTCCTTCTCCTT-CCTCAAGTG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5