BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36020.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491032 jgi|Araly1|491032|fgenesh2_kg.7__465__AT4G36020.1 881 0.0
> Ahg491032 jgi|Araly1|491032|fgenesh2_kg.7__465__AT4G36020.1
Length=1148
Score = 881 bits (477), Expect = 0.0
Identities = 667/752 (89%), Gaps = 39/752 (5%)
Strand=Plus/Plus
Query 547 GGTTGCTACACTTGCGGTGATGTTGGTCACGTGGCTAGGGATTGTACTCAGAAATCAGTT 606
||||| |||| ||| ||||||| ||||||| | ||||||||||||||||||||||||| |
Sbjct 420 GGTTGTTACAATTGTGGTGATGCTGGTCACTTCGCTAGGGATTGTACTCAGAAATCAGCT 479
Query 607 GGAAACGGAGACCAACGTGGAGCGGTCAAAGGTGGAAACGATGGTTGCTACACTTGTGGT 666
||||||||||||||||||||||| | | || |||||| |||||||| |||| |||||||
Sbjct 480 GGAAACGGAGACCAACGTGGAGCAGCCGGAGCTGGAAAAGATGGTTGTTACAATTGTGGT 539
Query 667 GATGTTGGTCACTTTGCTAGGGA-T-T-GTACTCAGAAGGTTGCTGCCGGAAACGTCAGA 723
|| |||||||||| |||||||| | | ||| |||||| || ||||| ||||||||||||
Sbjct 540 GACATTGGTCACTTCGCTAGGGATTGTGGTAATCAGAAAGTGGCTGCTGGAAACGTCAGA 599
Query 724 AGCGGTGGTGGTGGTAGTGGAACTTGTTATTCATGCGGTGGAGTTGGTCACATTGCAAGA 783
||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 600 AGC---GGTGGTGGTAGTGGATCTTGTTATACATGTGGTGGAGTTGGTCACATTGCAAGA 656
Query 784 GATTGTGCGACTAAGAGACAGCCTTCTCGTGGGTGTTACCAGTGTGGTGGTTCTGGTCAC 843
|| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 GAGTGTGCGACTAAGAAACAGCCTTCTCGTGGTTGTTACCAGTGTGGTGGTTCTGGTCAC 716
Query 844 TTGGCTCGTGATTGTGACCAGAGAGGAAGCGGTGGAGGAGGTAATGATAATGCGTGCTAC 903
|||||||||||||||||||||||||||||||||||| | ||| || |||| |||||||
Sbjct 717 TTGGCTCGTGATTGTGACCAGAGAGGAAGCGGTGGAAGCGGTGGTGGTAATAAGTGCTAC 776
Query 904 AAG-TGTGGTAAGGAAGGTCACTTTGCAAGGGAATGTTCTTCTGTAGCTTAATCGATTTC 962
| | || ||||||||||||||||||||||||||||| || |||| |||||| |||||||
Sbjct 777 A-GCTGCGGTAAGGAAGGTCACTTTGCAAGGGAATG--CT-CTGTGGCTTAAACGATTTC 832
Query 963 CTAATCAACAAAACaaaaaaaCAAGAATGAAATTGAATCGAGTTATATAGTTTGGTATAT 1022
||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 833 CTAATCAACAAAA-AA-----CAAGAATGAAATTGAATCGAGTAATATAGTTTGGTATAT 886
Query 1023 ATTACTCTTCGTTTTCATTTATCtttttttttGTTGTTGATGGGAATGAAATTGCCTGGT 1082
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 887 ATTTCTCTTCGTTTTCATTTATCTTTTTTTTTGTTG---ATGGGAATGAAATTGCCTGGT 943
Query 1083 CCTTTTGGTGTGTTTTTGAGCTTTTATTATTATACAGAG--TGA-TCCCT-TTTTGTTAT 1138
||||||||||| ||| ||| |||||||||||||||||| ||| |||| |||||||||
Sbjct 944 CCTTTTGGTGT-TTTA-GAGGTTTTATTATTATACAGAGAGTGAATCCCCCTTTTGTTAT 1001
Query 1139 AACTATTACAAGTTTTTAGCTTTATTTG--------ATATGGATGCTCTCTCCTTTTCTT 1190
|||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1002 AACTATTACAAGTTTTTAGCTTTATTTGTTTCTCTGATATGGATGCTCTCT--TTTTCTT 1059
Query 1191 CTATCTGTTTCTGGAAATTTTGACCTCATCATATTACTTATGTCATCCAAAGTTTGAGTT 1250
||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||||
Sbjct 1060 CTATCTGTTTCTGGAAATTTTGACCTC-T--TATTGCTTATGTCATCTAAAGTTTGAGTT 1116
Query 1251 TTGTCCTTTTTATTAAAGTGCTGCTAGTTTCA 1282
|||||||||||||||||||| |||||||||||
Sbjct 1117 TTGTCCTTTTTATTAAAGTGTTGCTAGTTTCA 1148
Score = 667 bits (361), Expect = 0.0
Identities = 521/592 (88%), Gaps = 35/592 (6%)
Strand=Plus/Plus
Query 9 AAAAACCCTAATTTCTCAATCTCTTCTTCAACtttttttt-ttAACGATGGCTTCAGAGG 67
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAACCCTAATTTCTCAATCTCTTCTTCAACTTTTTTTTCCCCACGATGGCTTCAGAGG 60
Query 68 ATCAATCGGCGGCGAGATCTACCGGGAAGGTGAACTGGTTCAACGCTTCTAAAGGCTATG 127
|||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 61 ATCAATCGGCGGTGAGATCTACCGGGAAGGTTAACTGGTTCAACGATTCCAAAGGCTATG 120
Query 128 GTTTCATTACTCCTGACGATGGCAGCGTAGAGCTTTTCGTTCATCAATCTTCAATTGTCT 187
|||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||
Sbjct 121 GTTTCATTACTCCTGAAGACGGCAGCGAAGAGCTTTTCGTTCATCAATCCTCAATTGTCT 180
Query 188 CCGAAGGTTACCGGAGTTTAACCGTCGGCGATGCGGTTGAGTTCGCTATTACTCAGGGAA 247
|||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||
Sbjct 181 CCGAAGGTTACCGGAGTTTAGCTGAGGGCGATTCGGTTGAGTTCGCTATTACTCAGGGAA 240
Query 248 GCGACGGTAAGACTAAAGCCGTCAATGTTACTGCTC-CTGGTGGTGGTTCTCTCAAGAAG 306
||||||||||||||||||||||| | |||||||||| | ||||||||| |||| ||||||
Sbjct 241 GCGACGGTAAGACTAAAGCCGTCGAGGTTACTGCTCTC-GGTGGTGGTGCTCTTAAGAAG 299
Query 307 GAGAATAACTCTCGTGGTAACGGTGCTAGGCGCGGCGGCGGTGGAAGCGGTTGCTACAAT 366
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 GAGAATAACTCTCGCGGTAACGGTGCTAGGCGCGGCGG---TGGAAGCGGTTGCTACAAT 356
Query 367 TGCGGTGAGTTAGGTCATATCTCTAAAGATTGTGGTATTGGTGGCGGCGGCGGAGGTGGT 426
|||||||||||||||||||| | | |||| |||| |||||||||||
Sbjct 357 TGCGGTGAGTTAGGTCATAT-T-----G---GTGG---------CGGCAGCGGAGGTGGT 398
Query 427 GAACGTAGATCTAGAGGAGGAGAAGGTTGTTACAATTGTGGTGATACTGGTCACTTCGCT 486
|||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 399 GAACGTGGATCTAGA--AG-AGAAGGTTGTTACAATTGTGGTGATGCTGGTCACTTCGCT 455
Query 487 AGGGATTGTACT------TCAGCTGGAAACGGTGACCAACGTGGAGCCA-CCAAAGGTGG 539
|||||||||||| |||||||||||||| |||||||||||||| | || || |||
Sbjct 456 AGGGATTGTACTCAGAAATCAGCTGGAAACGGAGACCAACGTGGAGC-AGCCGGAGCTGG 514
Query 540 AAACGATGGTTGCTACACTTGCGGTGATGTTGGTCACGTGGCTAGGGATTGT 591
||| |||||||| |||| ||| ||||| |||||||| | ||||||||||||
Sbjct 515 AAAAGATGGTTGTTACAATTGTGGTGACATTGGTCACTTCGCTAGGGATTGT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5