BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G36040.1

Length=1104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944272 jgi|Araly1|944272|scaffold_700501.1                        800    0.0  


> Ahg944272 jgi|Araly1|944272|scaffold_700501.1
Length=523

 Score =  800 bits (433),  Expect = 0.0
 Identities = 496/526 (94%), Gaps = 5/526 (1%)
 Strand=Plus/Plus

Query  63   AACGTTTCATATAGCAACGATGCTTTCTTCATCTCCAACTTCCTTTACTCATCCATTtct  122
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  2    AACGTTTCATATAGCAACGATGCTTTCTTCATCTCCAACTTCCTTTGCTCATCCATTTCT  61

Query  123  ctcttcttctccgcctctatctccgatatctccgccgtctcgcacggctcggatctctcc  182
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct  62   CTCTTCATCTCCGCCTCTCTCTCCGATATCTCCGCCGTCTCGCACGGCTCGGATCCCGCC  121

Query  183  ACCTCTCGTCTCCGCCTCTTGCTCATACACCTACACGGAAGATTCGCCGAGACTGCATCA  242
            |||||||||||||||||||||||| ||||| | | |||| |||||||||||| |||||||
Sbjct  122  ACCTCTCGTCTCCGCCTCTTGCTCTTACACTTGCGCGGAGGATTCGCCGAGATTGCATCA  181

Query  243  GATCCCGCGGCGATTGACGACGGTGCCAGCTTCGCTTTACGATG-TTCTTGAGGTTCCTT  301
            |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct  182  GATCCCGCGGCGGTTGACGACGGCGCCAGCTTCGCTTTACGA-GATTCTTGAGGTTCCTT  240

Query  302  TAGGCGCGACGAGTCAGGATATCAAATCGGCTTACCGGAGATTAGCCAGGATCTGCCATC  361
            |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TAGGAGCGACGAGCCAAGATATCAAATCGGCTTACCGGAGATTAGCCAGGATCTGCCATC  300

Query  362  CAGACGTGGCGGGAACTGATCGGACTTCTTCTTCATCGGCGGATGAATTCATGAAGATCC  421
            ||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||
Sbjct  301  CAGACGTGGCGGGAACTGAGCGGACTTCTTC---ATCGGCGGATGAATTCATGAAGATCC  357

Query  422  ATGCCGCTTACTGTACGCTTTCTGATCCTGAGAAACGCTCCGTTTATGATCGGAGGATGT  481
            | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  358  ACGCCGCTTACTGTACGCTTTCGGATCCTGAGAAACGCTCTGTTTATGATCGGAGGATGT  417

Query  482  TGCGACGGAGCCGTCCTTTGACCGTCGGAACCTCCGGGTTGGGAAGCTACGTCGGACGGA  541
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  418  TGCGACGGAGCCGTCCTTTGACCGTCGGTACCTCCGGGTTGGGAAGTTACGTCGGACGGA  477

Query  542  ACTGGGAAACCGATCAGTGTTGGTAGTGAGTTAACTCGGTGACCGA  587
            ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct  478  ACTGGGAAACCGATCAGTGCTGGTAGTGAGTTGACTCGGTGAACGA  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41134627443


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5