BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36050.2
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491028 jgi|Araly1|491028|fgenesh2_kg.7__461__AT4G36050.2 3153 0.0
> Ahg491028 jgi|Araly1|491028|fgenesh2_kg.7__461__AT4G36050.2
Length=2168
Score = 3153 bits (1707), Expect = 0.0
Identities = 2046/2203 (93%), Gaps = 50/2203 (2%)
Strand=Plus/Plus
Query 2 GGAAGAAGGAGAAGATGAAGATAGTGACTTACAACGTTAATGGCCTTAGGCAACGAGTTT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAAGAAGGAGAAGATGAAGATAGTGACTTACAACGTTAATGGCCTTAGGCAACGAGTTT 60
Query 62 CGCAGTTTGATTCTCTTCTCAAACTTCTCGATTCGTTCGACGCCGATATCATTTGCTTCC 121
|||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct 61 CGCAGTTTGAATCTCTTCTCAAACTTCTCGATTCGTTCGACGCTGATATTATCTGCTTTC 120
Query 122 AGGAGACGAAACTGAGAAGGCAAGAATTGACAGCAGATTTGGCGATAGCTGATGGGTATG 181
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 121 AGGAGACGAAACTGAGAAGGCAGGAATTGACAGCGGATTTGGCAATAGCTGATGGGTATG 180
Query 182 AATCGTTTTTCTCGTGCACTCGCACTAGTGAGAAAGGTCGTACTGGTTATTCTGGTGTAG 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AATCGTTTTTCTCGTGCACTCGCACTTGTGAGAAAGGTCGTACTGGTTATTCTGGTGTAG 240
Query 242 CAACGTTTTGCAGGGTGAAGTCAGCATCTTCAAGCTGTGAAACTGCTTTGCCTGTTACTG 301
|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 241 CAACGTTTTGTAGGGTAAAGTCAGCATCTTCAAGCTGTGAAATTGCTTTGCCTGTTGCTG 300
Query 302 CAGAAGAAGGCATCACTGGTCTTGTAAACAGTAATTCACGAGGTGGGAAGAGTGAAACGT 361
||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 CAGAAGAAGGCGTCACGGGTCTTGTAAACAGTAATTCACGAGGTGGGAAGAATGAAATGT 360
Query 362 CTACAGTAGCTGAAGGTCTTGAGGAATATGAGAAAGAAGAGCTTCTTATGATTGACCAAG 421
|| |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 361 CTGCAGTAGGTGAAGGTCTTGAGGAATATGAAAAAGAAGAGCTTCTTAGGATTGACCAAG 420
Query 422 AAGGACGATGTGTTATAACTGATCACGGCCACTTTGTTGTTTTCAATGTTTATGGGCCGC 481
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGACGGTGTGTTATAACTGATCACGGCCACTTTGTTGTTTTCAATGTTTATGGGCCGC 480
Query 482 GAGCTGTAGCTGATGATGCTGATAGGATCGAGTTTAAGCATCGGTTCTATGGTGTTTTAG 541
||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct 481 GAGCTGTAGCTGATGATGCTGATAGAATCGAGTTTAAGCATCGGTTCTATGATATTTTAG 540
Query 542 AGAGAAGATGGGAGTGTCTTCTGCGTCAAGGAAGGAGGGTATTTGTTGTTGGGGATCTCA 601
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 541 AGAGAAGATGGGAGTGTCTTCTGCGTCAGGGAAGGAAGGTATTTGTTGTTGGGGATCTCA 600
Query 602 ACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTTGAGAAAAACGAGT 661
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 ACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTCGAGAAAAACGAGT 660
Query 662 TCAGGAAATGGTTTAGATCTCTGCTAGTTGAACGTGGAGGCTCATTCTCTGATGTTTTCA 721
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 TCAGGAAGTGGTTTAGATCTCTGCTAGTTGAACGTGGAGGCTCATTCTCTGATGTCTTCA 720
Query 722 GATCAAAACATCCTGAAAGGAAAGATGCATTCACATGTTGGTCCTCAAGTAGTGGAGCAG 781
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 721 GATCAAAACATCCTGAAAGGAAAGATTCATTCACATGTTGGTCCTCAAGTACTGGAGCAG 780
Query 782 AACAATTTAACTACGGTTCGAGGATTGATCATATCTTAGTTGCTGGGTCATGCTTGCATC 841
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 781 AAAAATTTAACTACGGTTCGAGGATTGATCATATCTTAGTTGCTGGATCATGCTTGCATC 840
Query 842 AGGACGAAGATAAGCAGGGGCATAGTTTTCTTGCTTGCCATGTCAAGGAATGTGACATAT 901
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGGAAGAAGATAAGCAGGGCCATAGTTTTCTTGCTTGCCATGTCAAGGAATGTGACATAT 900
Query 902 TAACAGAGTATAAGCGTTTTAAGAATGAAAATATGCCAACAAGGTGGAAAGGTGGATTGG 961
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 TAACAGAGTATAAGCGGTTTAAGGATGAAAATATGCCAACAAGGTGGAAAGGTGGATTGG 960
Query 962 TTACAAAATTTAAGGGATCAGACCACGTACCTGTATTCATTAGTTTTGATGATTTACCAG 1021
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 961 GTACAAAACTAAAGGGATCAGACCACGTACCTGTATTCACTAGTTTTGATGATTTACCAG 1020
Query 1022 ACATCCCGGAACACAGCACGCCGCCATTAGCGTCAAGATATCTTCCCATGATTTACGGTT 1081
||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1021 ACATCCCCGAACACAGCACGCCACCATTAGCTTCGAGATATCTTCCCATGATTTACGGTT 1080
Query 1082 TCCAACAAACTCTTGTATCGGTATTTAAGAAGAGGCGGGCCAATGAAGAAGCCAAAGCCA 1141
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1081 TCCAGCAAACTCTTGTATCGGTATTTATGAAGAAGCGGGCCAATGAAGAAGCCAAAGCCA 1140
Query 1142 TTGAGGTGTCATGTTCATCATCAACTCAAAGTAATACTTCATCAATTTGTGGGGATATTT 1201
||||||| |||||||||||||| | |||||||| | ||||||||| ||||||||||||||
Sbjct 1141 TTGAGGTATCATGTTCATCATCGAGTCAAAGTAGTGCTTCATCAAGTTGTGGGGATATTT 1200
Query 1202 CTACAGGACCACTGAGAAATTGTGGTTCGATGGGAATTTCACTTGAGAAATCTTGTTCTT 1261
||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1201 CTACAGGACCACTGAGAAACTGTGTTTCAATGGGAATTTCACTTGAGAAATCTTGTTCGT 1260
Query 1262 TTGAGAACAAATCCACTTCCGGCGTTACAGAAGCAGAAACGGTGGCAGCAACAGGTTCCA 1321
||||||| ||||||||| | | ||||||||||||||||||||||| ||||||||||||
Sbjct 1261 TTGAGAATGAATCCACTTGTGCCTTTACAGAAGCAGAAACGGTGGCATCAACAGGTTCCA 1320
Query 1322 TTGATAAC-CTTAGTGATGGAATACGTGCATCATCAGTTAGAGCTTTGAATATCTCTAGA 1380
|||||||| ||| |||||||||| |||| |||||||| ||||||| ||||||||||||||
Sbjct 1321 TTGATAACACTT-GTGATGGAATTCGTGTATCATCAGGTAGAGCTGTGAATATCTCTAGA 1379
Query 1381 GATGGAGACAGGAAAAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAGTCCTTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 GATGGAGACAGGAAAAAAGCAAGGAAAATCCAATCATCTCAGCTTTCTCTCAAATCCTTT 1439
Query 1441 TTCACTACAAACTCAAAAGTAAACAATGTCGAGGATAGTTCTTCTTCCTATGTTTCCTCC 1500
||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||
Sbjct 1440 TTCACTACAAACTCAAAGGTTAAGAATGGCGGGGATAGTTCTTCTTCCTATGTTTCCTCC 1499
Query 1501 AGTCCCAGCTCCCAAGTAGAAAGCATCACAGAACCGAATGTTT-CAGGCAAAGAAGACAG 1559
|||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |
Sbjct 1500 AGTCCCAGCTCCCAAGCCGAAAGTATCACAGAACCGAATGTTTCCA-GCAAAGAAGACGG 1558
Query 1560 TGAACCGACTACTTCAACACAGGAACAGGATCAAACAGGTTCTTCAGCTAAACaaaaaaa 1619
||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||
Sbjct 1559 CGAACCGACTACTTCAACACAGGAACAGGATCGAAGTGGTTCTTCTGCTAAACAAAAGAA 1618
Query 1620 CGATGCAGCTTTAATGGAGTGGCAAAGAATACAGAACCTAATGCAAAACAGCATACCTCT 1679
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1619 CAACGCAGCTTTAATGGAGTGGCAAAGAATACAAAACCTAATGCAAAACAGCATACCTCT 1678
Query 1680 CTGCAAAGGACATAAAGAAGCTTGTGTTGCTAGGGTCGTCAAGAAACCAGGTCCCACATT 1739
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1679 CTGCAAAGGACATAAAGAAGCTTGTGTTGCTCGGGTCGTAAAGAAACCAGGTCCCACATT 1738
Query 1740 CGGACGCAGATTCTACGTCTGCTCTCGAGCTGAGAAGCAAACTGTGGTTATTTCAAATGG 1799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TGGACGCAGATTCTACGTCTGCTCTCGAGCTGAGAAGCAAACTGTGGTTATTTCAAATGG 1798
Query 1800 GCTTCATCAAAATTCAGAGACAAGTAAAAGAGTGATGAGATC-A-A--AA---TGATA-A 1851
||||||||||||||||||||||||||||||||||||||||| | | || |||| |
Sbjct 1799 GCTTCATCAAAATTCAGAGACAAGTAAAAGAGTGATGAGATTGAGATCAACCATGATTGA 1858
Query 1852 GTATTGAGGAACGAAGGATTTTAATCTAGTGAGCTCAGGTACACCGTAGAAACTCGACAA 1911
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GTATTGAGGAACCAAGGATTTTAATCTAGTGAGCTCAGGTACACCGTAGAAACTCGACAA 1918
Query 1912 TGTCGGTATGTAGTTAATGTTGTCTTAATCTCTAAGAGACTTG-AC-CAATGGC-AATGT 1968
||||||||| ||||||||||| |||||||||||||||| ||| || | || | |||||
Sbjct 1919 TGTCGGTATATAGTTAATGTTATCTTAATCTCTAAGAGT-TTGGACTCT-TGACCAATGT 1976
Query 1969 GTAAAGTTGCTGGATCAAGGTTCTTTCCACGTTCCAACGTCTCTATCAGTTTATCCCTCT 2028
||||||||||||||| ||| ||||||||||||||| || | ||| | ||
Sbjct 1977 GTAAAGTTGCTGGATGAAGCTTCTTTCCACGTTCC---GT-TGTAT-A----AT------ 2021
Query 2029 TTGTTTTATAATGTATTGTTTCTTCAAATGTGATTAAC-TTTTAGCTTTATAGCAGCTAA 2087
|| || ||| || || || || |||||||||| |||||||||||||||||||||
Sbjct 2022 --GT---AT--TGT-TTCTT-CT--AA-TGTGATTAACCTTTTAGCTTTATAGCAGCTAA 2069
Query 2088 TATACTAA-TGTTACAAGTTGCAGAGAAATTTGATTATATAAGGTTATGTTAATTCACAT 2146
|||||||| | ||||||||||||| ||| | |||||||||||||||||||| ||||||||
Sbjct 2070 TATACTAAAT-TTACAAGTTGCAG-GAA-TCTGATTATATAAGGTTATGTTGATTCACAT 2126
Query 2147 GGATACGTATACGTATACGTAATCTGTGTGTATGGAATTATGT 2189
||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2127 GGATACGTATACGTATACGTA-TGTGTGTGTATGGAATTATGT 2168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5