BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36060.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491027 jgi|Araly1|491027|fgenesh2_kg.7__460__AT4G36060.2 1308 0.0
> Ahg491027 jgi|Araly1|491027|fgenesh2_kg.7__460__AT4G36060.2
Length=1118
Score = 1308 bits (708), Expect = 0.0
Identities = 844/907 (93%), Gaps = 19/907 (2%)
Strand=Plus/Plus
Query 102 GAGCTGAGATGGTGGTGGAAGTGAAGAAGGAAGCAGTTTGTTCCCAGAAAGCAGAGCGAG 161
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 221 GAGCTGAGATGGTGGTGGAAGTGAAGAAGGAAGCAGTTTGTTCCCGGAAAGCAGAGAGAG 280
Query 162 AGAAGCTTCGTAGAGATAAGCTTAAGGAACAGTTTCTTGAGCTTGGAAATGCACTTGATC 221
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct 281 AGAAGCTTCGTAGAGATAAGCTCAAGGAGCAGTTTCTTGAGCTTGGAAAGGCACTAGATC 340
Query 222 CGAATAGGCCTAAGAGTGACAAAGCCTCAGTTCTCACTGATACAATACAAATGCTCAAGG 281
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 341 CAAATAGGCCTAAGAGTGACAAAGTTTCAGTTCTCACTGATACAATACAAATGCTGAAGG 400
Query 282 ATGTAATGAACCAAGTTGATAGACTAAAAGCTGAGTATGAAACACTATCTCAAGAGTCTC 341
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 401 ATGTAATGAACCAAGTTGATAGACTAAAAGCTGAGTATGCAACACTCTCTCAAGAGTCTC 460
Query 342 GTGAGCTAATTCAAGAGAAGAGTGAGCTGAGAGAGGAGAAAGCGACTTTAAAGTCTGATA 401
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 461 GTGAGCTAATTCAAGAGAAGAGTGAGCTGAGAGAGGAAAAAGCGACTTTAAAGTCCGATA 520
Query 402 TCGAGATTCTTAATGCTCAATATCAGCATAGAATCA-AAACCATGGTTCCATGGGTACCT 460
|||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||
Sbjct 521 TCGAGATTCTTAATGCTCAATATCAGCATAGAATCAGAAA-TATGGTCCCATGGATACCT 579
Query 461 CATTACAGTTATCATA-TCCCCTTCGTAGCCATAACTCAGGGTCAGTCCAGTTTTAT-AC 518
||||||| ||||| || ||||| | ||||| |||||||||||||||||||||||| | ||
Sbjct 580 CATTACACTTATCCTATTCCCC-TAGTAGCAATAACTCAGGGTCAGTCCAGTTTT-TCAC 637
Query 519 CTTATTCAGCCTCTGTCAATCCTCTAA-CCGAACAACAAGCATCGGTTCAGCAGCATTCT 577
||||||||||||| ||||||||||||| | | ||||||||||||||||||||| ||||||
Sbjct 638 CTTATTCAGCCTCGGTCAATCCTCTAATCAG-ACAACAAGCATCGGTTCAGCAACATTCT 696
Query 578 TCTTCTTCTGCCGATGCTTCAATGAAACAAGATTCCAAAATCAAGCCGTTAGATTTGGAT 637
||||| | | ||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct 697 TCTTC-T-T-CCGATGCTTCAATCAAACAAGATTTCAAAATCAAGCCTTTAGATTTGGAT 753
Query 638 CTGATGATGAACAGTAACCATTCAGGTCAAGGAAATGATCAAAAAGATGATGTTCGTTTA 697
||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 754 CTGATGAGGAACAGTAACCATTCAGGTCAAGGAAATGATCATAAAGATGATGTTGGTTTA 813
Query 698 AAGCTCGAGCTTAAAATCCATGCCTCTTCTTTAGCTCAACAGGATGTTTCTGGAAAAGAG 757
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GAGCTTGAGCTTAAAATCCATGCCTCTTCTTTAGCTCAACAGGATGTTTCTGGAAAAGAG 873
Query 758 AAGAAAGTAAGCTTGACAACCACTGCAAGCTCATCGAATAGTTACTCATTATCTCAAGCT 817
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 874 AAGAAAGGAAGCTTGACAACCACTGCAAGCTCATCGAATAGTTACTCATCATCTCAAGCT 933
Query 818 GTTCAAGATAGTTCCCCCGGTACCGTAAATGACATGTTGAAGCCATAAACCAATAAACAT 877
||||||||||||||||| |||||| |||||||||| |||||| ||||||| ||||||||
Sbjct 934 GTTCAAGATAGTTCCCCGGGTACCCTAAATGACATTTTGAAGTCATAAACTGATAAACAT 993
Query 878 ATTCCCCTGAA-C-TTGTGTTTAATACCGTGATTGAGAA-GGTACC-ATGAT--TAAACT 931
|||||||| || | |||||||||||||| |||||||||| |||||| | ||| ||||||
Sbjct 994 ATTCCCCT-AAGCCTTGTGTTTAATACCATGATTGAGAAAGGTACCCA-GATACTAAACT 1051
Query 932 TGTTGTAGATTATCCACATGATTAACGATGTATTCTTATCACAAGCAAATAAAACACAAA 991
||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1052 TGTTGTAGATTATCCCCATGATTAACTATGTATTATTATCACAAGCAAATAAAACACAAA 1111
Query 992 AGCATTT 998
|||||||
Sbjct 1112 AGCATTT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5