BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36070.2
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328146 jgi|Araly1|328146|fgenesh1_pm.C_scaffold_7000373 2475 0.0
Ahg906621 jgi|Araly1|906621|Al_scaffold_0003_3749 1214 0.0
> Ahg328146 jgi|Araly1|328146|fgenesh1_pm.C_scaffold_7000373
Length=1605
Score = 2475 bits (1340), Expect = 0.0
Identities = 1502/1582 (95%), Gaps = 4/1582 (0%)
Strand=Plus/Plus
Query 33 ATGGGTCTCTGTTTCTCGTCTCCTAAAGCCACCAGACGTGGCACCGGTAGTCGGAACCCT 92
||||||||||||||||| ||||||||||||||||||||||||||| || | |||||||||
Sbjct 1 ATGGGTCTCTGTTTCTCTTCTCCTAAAGCCACCAGACGTGGCACCAGTCGCCGGAACCCT 60
Query 93 AATCCTGATTCTCCGACGCAGGGGAAGGCGAGTGA-GAAGGTTAGTAATAAAAAC-AAGA 150
|||| | |||||||||||||||||||||| ||| | || || || || || ||||
Sbjct 61 AATCTTCATTCTCCGACGCAGGGGAAGGCTAGTAATAAAAACAAG-AA-GAAGACAAAGA 118
Query 151 AGAATACGAAGAAGATCCAATTGAGGCACCAAGGAGGGATCCCGTACGGTAAACGCATCG 210
||| | ||| |||||||||| ||||||| |||||||| ||||||||||| |||||||
Sbjct 119 AGAGCAAGAACAAGATCCAATGGAGGCACGGGGGAGGGATACCGTACGGTAAGCGCATCG 178
Query 211 ATTTTGGGTACGCTAAGGATTTCGATAACCGATACACCATTGGGAAATTGCTCGGACATG 270
||||||| |||||||||||||||||||| ||||||| ||| |||| |||||||||||| |
Sbjct 179 ATTTTGGTTACGCTAAGGATTTCGATAATCGATACATCATCGGGAGATTGCTCGGACACG 238
Query 271 GCCAGTTTGGCTTTACCTACGTCGCCACCGATAACAACAATGGCAATCGCGTTGCAGTCA 330
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 239 GCCAGTTTGGCTTTACCTATGTCGCCACCGATAACAACAACGGCAATCGCGTCGCAGTCA 298
Query 331 AGAGAATCGACAAGGCCAAGATGACTCAACCGATTGAAGTGGAAGATGTGAAGCGAGAGG 390
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGAGAATCGAGAAGGCCAAGATGACTCAACCGATTGAAGTGGAAGATGTGAAGCGAGAGG 358
Query 391 TTAAGATACTACAAGCTTTAGGTGGGCATGAGAATGTGGTAGGCTTTCACAATGCATTTG 450
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 TGAAGATACTACAAGCTTTAGGTGGGCATGAGAATGTGGTTGGCTTTCACAATGCATTTG 418
Query 451 AGGACAAGACCTATATTTACATTGTCATGGAGTTATGTGACGGTGGTGAATTGCTAGATC 510
||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 419 AGGACAACAACTATATTTACATAGTCATGGAGTTATGTGAAGGTGGTGAATTGCTAGATC 478
Query 511 GAATACTAGCTAAGAAAGATAGCCGTTACACCGAGAAAGATGCAGCGGTTGTGGTGAGAC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GAATACTAGCTAAGAAAGATAGCCGTTACACCGAGAAAGATGCAGCGGTTGTGGTGAGAC 538
Query 571 AAATGCTGAAAGTTGCAGCTGAATGTCATTTACGAGGTCTAGTTCACCGCGACATGAAGC 630
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 539 AAATGCTGAAAGTTGCAGCTGAGTGTCATTTACGAGGTCTAGTGCACCGCGACATGAAGC 598
Query 631 CAGAGAATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTG 690
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 CAGAGAATTTTCTGTTCAAATCAACCGAAGAAGGTTCGTCTCTAAAGGCTACAGATTTTG 658
Query 691 GTCTGTCGGACTTCATAAAGCCAGGAGTGAAATTTCAGGATATAGTAGGAAGCGCATACT 750
|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GTTTGTCAGACTTCATAAAGCCAGGAATGAAATTTCAGGATATAGTAGGAAGCGCATACT 718
Query 751 ACGTTGCACCTGAAGTGTTGAAACGTAGGTCAGGACCTGAATCAGACGTTTGGAGTATTG 810
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACGTCGCACCTGAAGTGTTGAAACGTAGGTCAGGACCTGAATCAGACGTTTGGAGTATTG 778
Query 811 GTGTCATCACTTACATTCTGCTCTGCGGGAGAAGACCCTTCTGGGATAAGACTCAAGACG 870
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGTCATCACTTACATTCTTCTCTGCGGGAGAAGACCCTTCTGGGATAAGACTCAAGACG 838
Query 871 GAATATTCAATGAGGTCATGAGGAAAAAACCTGATTTCAGAGAAGTCCCATGGCCAACCA 930
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 GAATATTCAATGAGGTCATGAGAAAAAAACCTGATTTCAGAGAAGTCCCATGGCCAACCA 898
Query 931 TTAGCAACGGTGCCAAAGATTTCGTGAAGAAGTTGTTAGTTAAGGAGCCTCGGGCACGGT 990
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 TCAGCAACGGTGCCAAAGATTTCGTGAAGAAGTTGTTAGTTAAGGAGCCGCGGGCACGGT 958
Query 991 TAACAGCAGCTCAAGCGCTATCACATTCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGG 1050
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 959 TAACAGCAGCTCAAGCGCTATCACATCCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGG 1018
Query 1051 TTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTCAGCCGTCTGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1019 TTCCAATAGACATATCTGTTCTTAACAATATGCGTCAGTTTGTGAAATTTAGCCGCCTTA 1078
Query 1111 AGCAGATTGCACTTAGGGCTCTGGCGAAAACAATTAATGAGGATGAGCTGGATGATCTCA 1170
|||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1079 AGCAGATTGCTCTGAGGGCTCTGGCGACAACAATTGATGAGGATGAGCTGGATGATCTCA 1138
Query 1171 GAGACCAGTTTGATGCGATTGACATTGACAAGAACGGTTCTATAAGCCTTGAGGAAATGA 1230
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1139 GAGACCAGTTTGATGCGATTGACATTGACAAGAACGGTTCGATAAGCCTTGAAGAGATGA 1198
Query 1231 GGCAGGCTCTTGCGAAAGATGTTCCTTGGAAACTCAAAGATGCAAGAGTTGCAGAGATTC 1290
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1199 GGCAGGCTCTTGCGAAAGATGTTCCTTGGAAACTGAAGGATGCAAGAGTTGCAGAGATTC 1258
Query 1291 TCCAAGCGAATGATAGCAACACTGATGGTTTGGTGGATTTCACTGAGTTTGTGGTGGCTG 1350
| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 TTCAAGCGATTGATAGCAACACTGATGGATTGGTGGATTTCACTGAGTTTGTGGTGGCTG 1318
Query 1351 CTTTGCACGTGAACCAATTGGAGGAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAG 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CTTTGCACGTGAACCAATTGGAGGAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAG 1378
Query 1411 CAGCATTTGACAAGTTTGACATAGACGGAGATGGGTTTATAACTCCCGAAGAACTTAGAT 1470
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 CAGCATTTGACAAGTTTGACATAGACGGAGATGGGTTTATAACTCCCGAGGAACTTAGAT 1438
Query 1471 TGCAAACGGGTTTAAAAGGCTCCATCGAACCACTTCTTGAAGAGGCCGACGTAGATGAAG 1530
||||||||||||| ||||||||||||||||| ||||||||||| |||||| | ||| |||
Sbjct 1439 TGCAAACGGGTTTGAAAGGCTCCATCGAACCCCTTCTTGAAGAAGCCGACATTGATAAAG 1498
Query 1531 ATGGGAGAATCAGCATCAATGAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAA 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATGGGAGAATCAGCATCAATGAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAA 1558
Query 1591 AAAATGTTAAAAGCCCTCCTGG 1612
|||||||||||||||||||||
Sbjct 1559 GAAATGTTAAAAGCCCTCCTGG 1580
> Ahg906621 jgi|Araly1|906621|Al_scaffold_0003_3749
Length=1701
Score = 1214 bits (657), Expect = 0.0
Identities = 1186/1442 (82%), Gaps = 34/1442 (2%)
Strand=Plus/Plus
Query 188 GATCCCGTACGGTAAACGCATCGATTTTGGGTACGCTAAGGATTTCGATAACCGATACAC 247
|||||| |||||||| || |||||||| ||||||||||| ||||| ||| |||| |||||
Sbjct 252 GATCCCCTACGGTAAGCGTATCGATTTCGGGTACGCTAAAGATTTTGATCACCGTTACAC 311
Query 248 CATTGGGAAA-TTGCTCGGACATGGCCAGTTTGGCTT-TACCTACGTCGCCACCGATAAC 305
|||| ||||| ||||| |||||||| || ||||| || ||| || ||||| ||||||||
Sbjct 312 CATT-GGAAATTTGCTTGGACATGGTCAATTTGG-TTATACATATGTCGCTACCGATAA- 368
Query 306 AACAA-TGGCAATCGCGTTGCAGTCAAG-AGAATCGACAAGGCCAAGATGACTCAA--CC 361
|| || | |||| || || |||||| || ||||| ||||||||||||| ||| ||
Sbjct 369 AAAAACCGATGATCGTGTCGCGGTCAAGAAG-ATCGATAAGGCCAAGATGA--CAATTCC 425
Query 362 GATTGAAGTGGAAGATGTGAAGCGAGAGGTTAAGATACTACAAGCTTTAG-GTGGGCATG 420
||| | ||||||||||| ||| ||||||| ||||||||||||||||| | ||| ||||
Sbjct 426 GATAGCTGTGGAAGATGTAAAGAGAGAGGTGAAGATACTACAAGCTTT-GACTGGTCATG 484
Query 421 AGAATGTGG-TAGGCTTTCACAATGCATTTGAGGACAAGACCTATATTTACATTGTCATG 479
| ||||||| | || ||| | ||||| || |||||||||| || | |||| || || |||
Sbjct 485 AAAATGTGGTTCGG-TTTTATAATGCCTTCGAGGACAAGAACTCTGTTTATATAGTTATG 543
Query 480 GAGTTATGTGACGGTGGTGAATTGCTAGATCGAATACTAGCTAAGAAAGATAGCCGTTAC 539
|||||||| || ||||||||||| || ||||| ||| |||| | |||||||||||||||
Sbjct 544 GAGTTATGCGAGGGTGGTGAATTACTTGATCGGATATTAGCCAGGAAAGATAGCCGTTAT 603
Query 540 ACCGAGAAAGATGCAGCGGTTGTGGTGAGACAAATGCTGAAAGTTGCAGCTGAATGTCAT 599
| ||||| ||| || || || || ||||||||||||||||||||||| ||||| ||||||
Sbjct 604 AGCGAGAGAGACGCGGCCGTGGTAGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCAT 663
Query 600 TTACGAGGTCTAGTTCACCGCGACATGAAGCCAGAGAATTTTCTGTTCAAATCAACCGAA 659
|| || ||| | |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 664 TTGCGCGGTTTGGTTCACCGAGATATGAAACCAGAGAATTTTCTGTTCAAATCAACCGAA 723
Query 660 GAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGG-AGT 718
|||| ||| ||||||| ||||||||||| ||| | || ||||||||||||||||| |
Sbjct 724 GAAGATTCGCCTCTAAAAGCTACAGATTTCGGTTTATCAGACTTCATAAAGCCAGGCAA- 782
Query 719 GAAA-TTTCAGGATATAGTAGGAAGCGCATACTACGTTGCACCTGAAGTGTTGAAACGTA 777
||| ||||| || || || || || |||||||| || |||||||||||||||||||| |
Sbjct 783 -AAAGTTTCATGACATTGTTGGCAGTGCATACTATGTAGCACCTGAAGTGTTGAAACGCA 841
Query 778 GGTCAGGACCTGAATCAGACGTTTGGAGTATTGGTGTCATCACTTACATTCTGCTCTGCG 837
|||| ||||| |||||||| || |||||||| ||||| |||| ||||||||| |||||||
Sbjct 842 GGTCGGGACCCGAATCAGATGTGTGGAGTATCGGTGTAATCAGTTACATTCTTCTCTGCG 901
Query 838 GGAGAAGACCCTTCTGGGATAAGACTCAAGACGGAATATTCAATGAGGTCATGAGGAAAA 897
||||| |||| ||||||||||||||| ||||||| || ||||| |||||| ||| ||| |
Sbjct 902 GGAGACGACCATTCTGGGATAAGACTGAAGACGGTATCTTCAAGGAGGTCTTGAAGAACA 961
Query 898 AACCTGATTTCAGA-GAAGTCCCATGGCCAACCATTAGCAACGGTGCCAAAGATTTCGTG 956
|||||||||||||| ||| || |||||||||||||||||| | ||||||||||| ||
Sbjct 962 AACCTGATTTCAGAAGAAAACCG-TGGCCAACCATTAGCAACAGCGCCAAAGATTTTGTT 1020
Query 957 AAGAAGTTGTTAGTTAAGGAGCCTCGGGCACGGTTAACAGCAGCTCAAGCGCTATCACAT 1016
|||||||||||||| || || || | || || ||||| || || ||||| |||||||||
Sbjct 1021 AAGAAGTTGTTAGTAAAAGATCCGAGAGCGCGATTAACTGCTGCGCAAGCACTATCACAT 1080
Query 1017 TCATGGGTGAAAGAAGGAGGTGAGGCCTCAGAGGTTCCAATAGACATATCTGTTCTTAAC 1076
||||||| | ||||||||| || || || ||| |||| |||||||||||||| |||||
Sbjct 1081 CCATGGGTTAGAGAAGGAGGAGATGCATCTGAGATTCCTATAGACATATCTGTCCTTAAT 1140
Query 1077 AATATGCGTCAGTTTGTGAAATTCAGCCGTCTGAAGCAGATT-GCACTTAGGGCTCTGGC 1135
|| |||||||||||||||||||| ||||| || ||||| ||| || || |||||||| ||
Sbjct 1141 AACATGCGTCAGTTTGTGAAATTTAGCCGCCTCAAGCA-ATTCGCTCTAAGGGCTCTTGC 1199
Query 1136 GAAA-ACAATTAATGAGGATGAGCTGGATGATCTCAGAGACCAGTTTGATGCGATTGACA 1194
|| || || |||| || ||| ||| |||||| ||||||||||| |||||||||||
Sbjct 1200 -AACGACGCTTGATGAAGAAGAGTTGGCTGATCTTAGAGACCAGTTCGATGCGATTGATG 1258
Query 1195 TTGACAAGAACGGTTCTATAAGCCTTGAGGAAATGAGGCAGGCTCTTGCGAAAGATGTTC 1254
|||||||||| || | || |||||||| || |||||||||||||| ||||||||| ||
Sbjct 1259 TTGACAAGAATGGCGCCATTAGCCTTGAAGAGATGAGGCAGGCTCTGGCGAAAGATCATC 1318
Query 1255 CTTGGAAACTCAAAGATGCAAGAGTTGCAGAGATTCTCCAAGCGAATGATAGCAACACTG 1314
||||||| || || |||||| ||||||| |||||||| ||||||| |||||||||||| |
Sbjct 1319 CTTGGAAGCTTAAGGATGCACGAGTTGCCGAGATTCTTCAAGCGATTGATAGCAACACAG 1378
Query 1315 ATGG-TTTGGTGGATTTCACTGAGTTTGTGGTGGCTGCTTTGCACGTGAACCAATTGGAG 1373
|||| |||| |||| ||| |||||||| | |||||| | ||||| || ||||| |||
Sbjct 1379 ATGGATTTG-TGGACTTCGGGGAGTTTGTAGCGGCTGCACTACACGTAAATCAATTAGAG 1437
Query 1374 GAGCATGACTCTGAGAAGTGGCAACAGAGGTCAAGAGCAGCATTTGACAAGTTTGACATA 1433
|| || || || || |||||||| ||||| ||||||||||||||||| || || ||||||
Sbjct 1438 GAACACGATTCCGAAAAGTGGCAGCAGAGATCAAGAGCAGCATTTGAAAAATTCGACATA 1497
Query 1434 GACGGAGATGGGTTTATAACTCCCGAAGAACTTAGATTGCAAACGGGTTTAAAAGGCTCC 1493
|| |||||||| |||||||| | || |||||| || |||| || || || ||||| |||
Sbjct 1498 GATGGAGATGGATTTATAACAGCAGAGGAACTTCGAATGCATACTGGCTTGAAAGGGTCC 1557
Query 1494 ATCGAACCACTTCTTGAAGAGGCCGACGTAGATGAA-GATGGGAGAATCAG-CATC-AAT 1550
|| || |||||||||||||| || || | || || ||||| | |||||| | || ||
Sbjct 1558 ATTGAGCCACTTCTTGAAGAAGCAGATATTGAC-AATGATGGTAAAATCAGTC-TCCAA- 1614
Query 1551 GAGTTTCGCAGACTTTTGAGAAGTGCAAGCCTCAAGTCAAAAAATGTTAAAAGCCCTCCT 1610
|||||||| ||||||||||||| |||||| |||| |||| |||||||| ||||||||||
Sbjct 1615 GAGTTTCGTAGACTTTTGAGAACTGCAAGTATCAAATCAAGAAATGTTAGAAGCCCTCCT 1674
Query 1611 GG 1612
||
Sbjct 1675 GG 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5