BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36090.3
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491023 jgi|Araly1|491023|fgenesh2_kg.7__456__AT4G36090.3 1657 0.0
> Ahg491023 jgi|Araly1|491023|fgenesh2_kg.7__456__AT4G36090.3
Length=1535
Score = 1657 bits (897), Expect = 0.0
Identities = 1086/1179 (92%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 475 TTCTGAGGCGGCAAGTGCACA-AATGTCTTGGGCTGATATGGGAGAAGAAGATGGGCTCG 533
|||||||||||| ||| || | ||| |||||||||||||||||||| |||||||| | |
Sbjct 360 TTCTGAGGCGGCGAGTCCA-AGAATTTCTTGGGCTGATATGGGAGATGAAGATGGTTTGG 418
Query 534 AGGAGGAAGACCAGAAAGAGAATGAATTAGGTTCACATGGAGTTGATGTGAGTCCTTCCG 593
|||| ||||| |||||||| | || |||||||||||| || |||||||||||| ||| |
Sbjct 419 AGGAAGAAGAACAGAAAGATAGTGGATTAGGTTCACAGGGCGTTGATGTGAGTTCTTTAG 478
Query 594 TTGGAGACTCGATGAAGACTCCTGAGAAGCGTAAATTGTCTAGGGAAGAAAGAGAGCGTT 653
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGGAAACTCGATGAAGACTCCCCAGAAGCGTAAATTGTCTAGGGAAGAAAGAGAGCGTT 538
Query 654 ATCGGTTTATGAATGTGAAGAAAATGAAAGTGTTTTCTTGTTATGAGAAAGTTAGAGGGA 713
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 ATCGATTTATGAATGTGAAGAAAATGAAAGTGTTTTCTTGTTTTGAGAAAGTTAGAGGGA 598
Query 714 GGTCTGTTAATATTCTCGAAGGACTTGAATTGCATACCGGTGTTTTTAGCGCGGTGGAGC 773
||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 599 GGTCTATTAATATTCTCGAGGGACTTGAGTTGCATACTGGTGTTTTTAGCGCGGTGGAGC 658
Query 774 AGAAAAAGATTGTTGATTTTGTCTATGAACTACAAGAGAAAGGCCGTAGAGGAGAATTGC 833
||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||
Sbjct 659 AGAAAAAGATTGTTGATTTCGTCTATGAACTACAAGAGAAGGGTCAAAGAGGAGAATTGC 718
Query 834 GAGAGCGTACTTTTACCGCTCCGCATAAGTGGATGAGAGGCAAAGGACGAGTTACTATTC 893
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 AAGACCGTACTTTTACCGCTCCGCATAAGTGGATGAGAGGCAAAGGACGAGTTACTATCC 778
Query 894 AATTCGGATGTTGTTATAACTATGCACCGGACAAAGCGGGAAACCCACCCGGAATCCTTC 953
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 AATTCGGATGTTGTTATAACTATGCACCAGACAAAGCGGGAAACCCACCCGGAATCCTTC 838
Query 954 AACGTGGAGATGTTGATCCAATGCCATCTATTTTCAAAGTAATAATCAAAAGGTTGGTTG 1013
|||| | || ||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 839 AACGCGAAGCGGTTGATCCAATACCGTCTCTTTTCAAAGTAATAATCAAAAGGTTGGTTG 898
Query 1014 GGTGGCATGTACTTCCTCCAACTTGTGTACCGGATAGTTGTATCGTCAATATCTATGAGG 1073
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 899 GGTGGCATGTACTTCCTCCAACTTGTGTCCCAGATAGTTGTATCGTCAATATCTATGATG 958
Query 1074 AAGACGATTGCATACCTCCTCACATCGATAACCATGACTTCCTCCGCCCTTTCTGCACAG 1133
||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAGGCGATTGCATACCTCCTCATATCGATAACCATGACTTCGTCCGCCCTTTCTGCACAG 1018
Query 1134 TATCATTCCTCAGTGAATGCAATATACTCTTTGGTTCAAATCTCAAAGTCTTAGGACCTG 1193
|||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1019 TATCATTCCTCAGTGAGTGCAATATACTCTTCGGATCAAATCTCAAAGTCGTAGGACCTG 1078
Query 1194 GTGAATTCTCCGGTTCTTACTCTATACCGCTTCCTGTCGGATCAGTTCTAGTGCTCAA-G 1252
||||||||| |||| | |||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 1079 GTGAATTCTTCGGTCCATACTCTATGCCGCTTCCTGTTGGATCAGTTCTAGTGCTAAAAG 1138
Query 1253 GGTAATGGAGCTGATGTCGCTAAGCATTGTGTACCTGCCGTTCCCACAAAGAGGATATCG 1312
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 GG-AATGGAGCTGATGTCGCTAAGCATTGTGTACCTGCGGTTCCCACAAAGAGGATATCA 1197
Query 1313 ATCACGTTTAGGAAAATGGACGAGTCGAAAAGACCAGTCGGATTCACCCCGGAACCTGAT 1372
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1198 ATCACGTTTAGGAAAATGGACGAGTCGAAAAGACCAGTAGGATTCACTCCGGAACCTGAT 1257
Query 1373 TTGGA-GGAGATTAAGCCGTTGCCATACGAACACACCACGCCGAGTACTCCTGCTGATGC 1431
|| | || ||||||||||||||| ||||| || ||||||| |||||||||||||| |||
Sbjct 1258 TTACAAGG-GATTAAGCCGTTGCCGTACGAGCAGACCACGCAGAGTACTCCTGCTGCTGC 1316
Query 1432 AGTCATTAGCTCTTCAAGATCCAGCATTGATCAAAATGGTAGTAATCACAACAATCGAAC 1491
|| ||||||||||||||||||||| | || ||||||||||||||||||||| |||||||
Sbjct 1317 AGCCATTAGCTCTTCAAGATCCAGTAACGACCAAAATGGTAGTAATCACAACTATCGAAC 1376
Query 1492 TGCACATGGAGGAGGAAGCAAGTATCGTAGGTCGAGAGATTATCATTCTGAGAGTCGAGA 1551
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1377 TGCACATGGAGAAGGAAGCAAGGATCGTAGGTCGAGAGATTATCGTTCTGAGAGTCGAGA 1436
Query 1552 GCGGTCATCATCGGGCCAACGAAGAGAAACTTCACGACATACTCCTAATAGGTCCTATAG 1611
| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 1437 GTGGTCATCATCGGGCCAACGAAGAGAAAAGTCACGGCATACTCCTAACAGGTCTTATAG 1496
Query 1612 ACCCAAGGTTACTAGCTCCGACAACGTCTGAGAATTTGT 1650
|||||||| |||||||||||||||||||||| |||||||
Sbjct 1497 ACCCAAGGCTACTAGCTCCGACAACGTCTGAAAATTTGT 1535
Score = 346 bits (187), Expect = 3e-94
Identities = 336/400 (84%), Gaps = 42/400 (11%)
Strand=Plus/Plus
Query 11 TTGTTCGATCCGTACAAACTGAAACTAAAGTACGGAAACAGCGAGATTTGGTTTGTGCGA 70
|||||| |||||||||||||||||||||| |||||||||| |||| | || || |
Sbjct 1 TTGTTCAATCCGTACAAACTGAAACTAAAATACGGAAACA--GAGA----GATT-TG-G- 51
Query 71 TAGAAGATAATGGAACCAAATTATGAGGAAGATGTTTTTCTCGCCAAGTATCAATCATCC 130
| ||||||||||||| || || ||||||||||| |||| ||||||||| ||||
Sbjct 52 T------TAATGGAACCAAACTACGAAGAAGATGTTTTCCTCGGCAAGTATCAGCCATCG 105
Query 131 GAACTTAAGATTGCTTCTGAATTTCTTACGAATTGGTTGCCTTTCTTATCTAGAGATCTC 190
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 106 GAACTTAAGATTGCTTCTGAATTTCTTACGACTTGGTTGCCTTTCTTATCTAGAGATCTC 165
Query 191 TGCAACGACTGTGCTCATGTTCTCTCCGATCGAATCCGTTCTCTAGACCCAGAGCATTGT 250
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 166 TGCAACGACTGTGTTCATGTTCTCTCCGATCGAATCCGTTCTCTAGACCCAGAGAAG-GT 224
Query 251 AGTAATGGAGAAGTTAAAGCGGGTTCTGGTTCAATGGTGGATAACATGGAATCTGAAGAA 310
||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 225 --TAATGGAGAAGATAAAGCGGGTTCGGGTTCAATGGTGGAGAACATGGAATCTGAAGA- 281
Query 311 GTTGATAACATGGAATCTGAAGAAGTTGATAACAAGATGGACAATATTTATGACGGGAAG 370
|| | || | | || | | | ||||||| |||||||||||||||||
Sbjct 282 -TT--T----TG-A-T---AA----T--A-A----GATGGACGATATTTATGACGGGAAG 318
Query 371 TTGTGTGTTTCTCACTCATTAGATAGTTTGAAAGCTGGGG 410
|| |||| ||||||||||||||||||||||||||| ||||
Sbjct 319 TTTTGTGATTCTCACTCATTAGATAGTTTGAAAGCCGGGG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5