BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36110.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491020 jgi|Araly1|491020|fgenesh2_kg.7__453__AT4G36110.1 1238 0.0
> Ahg491020 jgi|Araly1|491020|fgenesh2_kg.7__453__AT4G36110.1
Length=884
Score = 1238 bits (670), Expect = 0.0
Identities = 824/894 (92%), Gaps = 27/894 (3%)
Strand=Plus/Plus
Query 1 ACACCTTTCTTCAAACATACCAAActctctctc-c--ctct-tc-cctcttctctctAGC 55
||||||||||||||||||||||||||||||||| | | || || ||| ||||||||||
Sbjct 1 ACACCTTTCTTCAAACATACCAAACTCTCTCTCTCTTCCCTCTCTTCTCCTCTCTCTAGC 60
Query 56 CAAGTTAGATTTCAATAAGGTCAAATCATGGCGATAAAGAAGTCGAACAAAGCGGCGTTG 115
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CAAGTTAGATTTCAACAAGGTCAAATCATGGCGATAAAGAAGTCGAACAAAGCGGCCTTG 120
Query 116 TCTCAAGCAGCATCTCTAAAGCAAATCTTGAAGAGGTGCTCAAGTCTAGGAAAGAAGAAT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCAAGCAGCATCTCTAAAGCAAATCTTGAAGAGGTGCTCAAGTCTAGGAAAGAAGAAT 180
Query 176 CAAGGTAATTGCTACTTCAACGACGTGCCAAAAGGTCACTTCCCGGTCTACGTCGGTCAA 235
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 CAAGGTAATTGCTACTTCAACGACGTGCCAAAAGGTCACTTTCCGGTATACGTCGGTCAA 240
Query 236 CACCGAAGTCGCTATGTGGTCCCAATCTCGTGGCTAGATCATCATGAGTTCCAGTCACTC 295
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 241 CACCGAAGTCGCTATGTGGTCCCAATCTCATGGCTAGATCATCCTGAGTTCCAGTCACTC 300
Query 296 CTCCAACTAGCCGAGGAAGAGTTTGGTTTCGAGCACGAGATGGGTCTCACTATCCCTTGT 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 CTCCAACTAGCCGAGGAAGAGTTTGGGTTCGAGCACGAGATGGGTCTCACTATACCTTGT 360
Query 356 GATGAAGTCGTCTTTCGTTCTCTCATCTCAATGTTCAGATAATACTCGATATCGAGGACT 415
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GATGAAGTCATCTTTCGTTCTCTCATCTCAATGTTCAGATAAAACTCGATATCGAGGACT 420
Query 416 GGTCTTCATTAGCTCAACTGGTCATTCTCTCAAGAAATATTCCCCTTTTAAGGAAGTAAG 475
|||| |||||||||| ||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 421 GGTC---ATTAGCTCAATTGGTCATTCTCTCGAGAAATATTCCCCTTT-AAGGATGTAAG 476
Query 476 AGTTTGATCACATTGTC---ACACTCCAGACTCGGAAGATCAAATCCTCAAAGTTATTAC 532
||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 477 AGTTTGATCACATTGTCGTCACACTCCAGACTCGG--GATCAAAGCCTCAAAGTTATTAC 534
Query 533 CAAGAAACAAGAAATAAGGAATATATGCAATC--TAT-T-ATTTAGGttttttttttCTT 588
|||||| ||||||||||||||| |||||||| ||| | ||||||| ||||||| |||
Sbjct 535 CAAGAATCAAGAAATAAGGAATGTATGCAATTAATATATTATTTAGGGTTTTTTT--CTT 592
Query 589 TGCTAAGAAGACGGAAGCAAATGGCGGGGATCGCGTTAAGTATCGACTCAAGATTTGTGG 648
|||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 593 TGCTAAGAAGACGGGAGCAAATGGCGAGGATCGCGTTAAGCATCGACTCAAGATTTGTGG 652
Query 649 CTATATTAATATACCTAACAGttttttttAATTAACCACTCTTTTGGGAtttttttttcc 708
||||||||||||| ||||||| || || |||||||| ||||||||||| |||||||||
Sbjct 653 CTATATTAATATATCTAACAGCTTATT--AATTAACCCCTCTTTTGGGAAATTTTTTTCC 710
Query 709 ttctatatattttcggtgccttcttttatatattttattttcaaatattttgtatattag 768
|| ||||| |||| ||| |||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 711 TTAAATATACTTTCTGTGTCTTCTTTTCTATATTTAATTCTCAAATATTTTGTATATTAG 770
Query 769 tttGG--A--TGGAAGACTTTTCCCTCAAGTCAACGTGTATTGTTGACCGTTGGTTCTTG 824
||||| | |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 771 TTTGGGTACGTGGACGACTTTTCCCTCAAGTCAACGTTTATTGTTGACCGTTGGTTCTTG 830
Query 825 AGAGGAATAGCTAGTTTT-ATTTGTATTAATTTTTTATTCAAGAATTTTCATTC 877
|||||||||||||||||| ||||||||| |||||| | ||||||||||||||||
Sbjct 831 AGAGGAATAGCTAGTTTTTATTTGTATTGATTTTTGAATCAAGAATTTTCATTC 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5