BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36140.1
Length=4824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888441 jgi|Araly1|888441|Al_scaffold_0007_427 2876 0.0
Ahg915586 jgi|Araly1|915586|Al_scaffold_0008_337 1027 0.0
Ahg905843 jgi|Araly1|905843|Al_scaffold_0003_2971 187 6e-46
Ahg887980 jgi|Araly1|887980|Al_scaffold_0786_1 187 6e-46
Ahg891927 jgi|Araly1|891927|Al_scaffold_0007_3913 139 2e-31
Ahg891930 jgi|Araly1|891930|Al_scaffold_0007_3916 137 6e-31
Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922 126 1e-27
Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919 126 1e-27
Ahg497514 jgi|Araly1|497514|fgenesh2_kg.686__1__AT5G38350.1 122 2e-26
> Ahg888441 jgi|Araly1|888441|Al_scaffold_0007_427
Length=2997
Score = 2876 bits (1557), Expect = 0.0
Identities = 2526/2989 (85%), Gaps = 86/2989 (3%)
Strand=Plus/Plus
Query 1366 ATGGATTTTCGCCGGAAAGGAATTTCTGCATTTGTAAATTACAGTGAGACTCTGGATGTG 1425
|||||||| || |||||| | ||| ||||||||| |||| || ||| | || ||||||
Sbjct 1 ATGGATTTCCGTCGGAAATGCATTGATGCATTTGTGAATTGCAATGAAATTCCGGATGTA 60
Query 1426 ATTGAGAGAGTTAGCGCTTCCGTGCTGGTTTTCTCAAAGAGCTGCGTCTCCTCCACCTCA 1485
|| || |||||||||||||||||| || ||||||| ||||||||| ||||||| ||||||
Sbjct 61 ATAGATAGAGTTAGCGCTTCCGTGGTGATTTTCTCCAAGAGCTGCTTCTCCTCTACCTCA 120
Query 1486 TGCCTGGACATGCTCGTGAGG-GTCTTTCAGTGTCGGAGGAAAACCGGCCAGCTGGTGGT 1544
||||| |||| |||||||||| || ||||||| | ||||||||||||||||||||||||
Sbjct 121 TGCCTAGACAAGCTCGTGAGGATTC-TTCAGTGCCAGAGGAAAACCGGCCAGCTGGTGGT 179
Query 1545 TCCTGTGTAT-TATGGCATTAGTTCATCAGATGTGGTGGTGCAGGAGCACAAGTCAGTGG 1603
||| || | | || ||||||||| ||||| || |||||||||||||||| |||||| ||
Sbjct 180 TCCAGTAT-TCTACGGCATTAGTCCATCAAATTTGGTGGTGCAGGAGCATGAGTCAGCGG 238
Query 1604 ACCGGATAAGAGAATGGAGTAGCGCACTCCAAGAACTGAGAGAATTACCAGGCCACCACA 1663
| ||| ||||||||||||||||||| ||||||||||||| || |||||||| ||||||
Sbjct 239 ATCGGGTAAGAGAATGGAGTAGCGCGCTCCAAGAACTGAAAGCATTACCAGCCCACCAGT 298
Query 1664 ATAGGGAGGAATGCAGTGAGAGCGAACTTGTGGAAGAGATTGTCAAAGATGTGCATGAGA 1723
||||||||||||| || ||| | |||||||||||||||||||||||||||||| |||| |
Sbjct 299 ATAGGGAGGAATGTAGCGAGTGGGAACTTGTGGAAGAGATTGTCAAAGATGTGTATGA-A 357
Query 1724 AA-CTCTTTCCCACGGAACAAATCGGAATCAACTCGAGGCTGCTGGAGATGGAACATTTG 1782
|| ||||||||||| ||||||| ||||||||| ||||| || ||||||| ||||| |||
Sbjct 358 AAGTTCTTTCCCACGCAACAAATTGGAATCAACACGAGGGTGATGGAGATAGAACAATTG 417
Query 1783 CTTTGCAAGCAACCATGGGGTGTCCGTCGCATAGGAATTTGGGGTATGCCCGGCATAGGC 1842
||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||
Sbjct 418 CTTTGCAAGCAACCATGGGGTATTCGTCGCATAGGAATTTGGGGTATGTCTGGCATAGGC 477
Query 1843 AAAACTACACTTGCTAAAGCATTTTTTGACCAAATCTCTGGTGGCTATGAAGCTTCTTGT 1902
|| || |||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 478 AAGACGACACTTGCTAAAACAGTTTTTGACCAAATCTCTGGAGGCTATGAAGCTTCTTGT 537
Query 1903 TTCATCAAACACTTTGACAAGGCTTTT-AGTGGGAAGGGGCTTCACCGTTTGCTGGAGGA 1961
|| |||||| ||||||||| ||||||| | || ||||||||||||||||||| |||||||
Sbjct 538 TTTATCAAAAACTTTGACATGGCTTTTCA-TGAGAAGGGGCTTCACCGTTTGTTGGAGGA 596
Query 1962 ACATTTTGGGAAAATTTTGAAGGAATTGCCTCGTGTATGCAGTAGCATTACGAGACCTAG 2021
||||||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||
Sbjct 597 GCATTTTGGGAATATTCTGAAGGAATTGCCTCGTGAATCCAGTAGCATTATGAGACCTAG 656
Query 2022 CCTCCCCAGGGA-CAAA-TTAAGCAAGAAGAGAACTCTT-GTTGTTCTTGATGATGTGCA 2078
||| ||| |||| ||| ||||| |||| |||||| || ||||||||||||||||||||
Sbjct 657 CCT-CCC-GGGAGAAAAGTTAAGAAAGATTAGAACT-TTCGTTGTTCTTGATGATGTGCA 713
Query 2079 CAATCCTTTGGTTGCCGAGTCTTTTCTCGAAGGGTTTCATTGGTTCGGCCCGGGAAGCCT 2138
|||| |||||||||| || |||||||||| |||||| |||||||| ||||||||||||||
Sbjct 714 CAATTCTTTGGTTGCTGAATCTTTTCTCGGAGGGTTCCATTGGTTTGGCCCGGGAAGCCT 773
Query 2139 AATCATCATAACGTCCAGAGATAAACAAGTGTTCCGCC-TTTGTCAGATCAATCATGTGT 2197
|| |||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 774 GATAATCATAACCTCCAGAGATAAACAAGTTTTCCGCCATTT-TCAGATCAATCATGTGT 832
Query 2198 ATGAGGTTCAGAGCTTTAATGAGAATGAGGCTCTGCAGCTGTTCTCTCAGTGTGCTTTTA 2257
||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 833 ATGAGGTCCAAAGCTTAAATGAGAATGAGGCTCTGCAGCTGTTCTCTCAGTGTGCATTTG 892
Query 2258 G-AAGAGATATAA-ATGAACAAAATCTGCTGGAACTATCACTGAAAGTGATTGACTATGC 2315
| || | |||||| | ||||||||||| |||||||| ||| | ||||||||||||||||
Sbjct 893 GTAA-ACATATAAGA-GAACAAAATCTCCTGGAACTTTCAAAGGAAGTGATTGACTATGC 950
Query 2316 TAGTGGAAATCCATTAGCTCTCAGCTTTTACTGCAGAGTGCTTAAGGGAAAGGAACTTTC 2375
|| ||||||||||||||||||||| | |||| |||||| ||||||||||||| |||| ||
Sbjct 951 TAATGGAAATCCATTAGCTCTCAGATGTTACGGCAGAGAGCTTAAGGGAAAGAAACTATC 1010
Query 2376 AGAAATGGAGACTACATTCTTCAAACTCAAACAACGAACTCCATATAAGATTTTTGATTT 2435
|||||| ||||| |||||| |||||||||| ||| |||||| || ||||| ||||||
Sbjct 1011 AGAAATTGAGACCACATTCCTCAAACTCAAGTTACGTACTCCAAATGAGATTCATGATTT 1070
Query 2436 GTTCAAGAGCAGCTACGAAACACTTGATGACAACGAGAAGAACATTTTTCTGGACATTGC 2495
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1071 GTTCAAGAGCAGCTACGAAGCACTTAATGACAATGAGAAGAACATTTTTCTGGACATTGC 1130
Query 2496 TTGTTTCTTC-AGTGGAGAAAATGTTGACTATGTGATGCGACTACTTGAGGGGTGTGGtt 2554
|||||||||| || |||||||||||||| |||||||| | ||| ||||||||||||||||
Sbjct 1131 TTGTTTCTTCGAG-GGAGAAAATGTTGATTATGTGATACAACTGCTTGAGGGGTGTGGTT 1189
Query 2555 tttttCCACATGTTGGGATTGATGTTCTTGTGGAGAACTGTCTGGTGACTATTTCAGAAA 2614
||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct 1190 TTTTTCCACATGTTGGGATTGGTGTTCTTGTGGAGAAGTGTCTGATGACTATTTCAGAAA 1249
Query 2615 ACAGAGTGAAAATGCATAGAATAATCCAAGACTTTGGCCGAGAAATAATCGATGGAGAAA 2674
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||
Sbjct 1250 ACAGAGTGAAAATGCACAGAATAATCCAAGACTTTGGCCGAGAAATAAGCAATGGCCAAA 1309
Query 2675 CAGTACAGATCGAGAGGCGTCGCAGACTGTCAGATCCTTGGAGCATCAAATTCCTTCTTG 2734
|||||||||| |||||| |||||||||||| || ||| ||| ||||| |||||| ||||
Sbjct 1310 CAGTACAGATAGAGAGGTGTCGCAGACTGTGGGAACCTAGGACCATCAGATTCCTACTTG 1369
Query 2735 AAGATGACGAACTCGAAGCAAATGAAGATCCCAAAGCAACATATACTCGTACTCTGGGCA 2794
|||||| | |||||||| || ||| |||||||||||| || ||||| | | ||||||| |
Sbjct 1370 AAGATGCCAAACTCGAAACATATGGAGATCCCAAAGCTACCTATACACATGCTCTGGGGA 1429
Query 2795 CTGAAGATATCGAAGGCATACTTCTGGACACATCGAACTTAACATTTGATGTGAAGCCTG 2854
||||||| || ||||||||| ||||||||| ||| ||||| | |||||||||||||||||
Sbjct 1430 CTGAAGACATTGAAGGCATATTTCTGGACATATCAAACTTGATATTTGATGTGAAGCCTG 1489
Query 2855 GTGCCTTTGAGAATATGCTAAGCCTTAGATTCCTGAAGATTTAT-TGTTCCAGTTATGAA 2913
|||| ||||| ||||||||||||||||||| ||||||||||| | ||||||||||||| |
Sbjct 1490 GTGCTTTTGAAAATATGCTAAGCCTTAGATACCTGAAGATTT-TCTGTTCCAGTTATG-A 1547
Query 2914 AACC-ATTATAGCCTCCGCCTTCCGAAAGGACTTAAGTTTCTGCCTGATGAGCTAAGACT 2972
|||| ||| | | ||||||||||| ||||||||| ||| ||||||| |||||||||||||
Sbjct 1548 AACCTATTTTGGACTCCGCCTTCCAAAAGGACTTGAGTCTCTGCCTTATGAGCTAAGACT 1607
Query 2973 CCTCCACTGGGAGAACTATCCTTTGCAATCCTTGCCACAAGACTTTGATCCATGCCACCT 3032
||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1608 CCTCCACTGGGTGAACTATCCTTTACAATCCTTGCCACAAGAATTTGACCCATGTCACCT 1667
Query 3033 TGTTGAACTCAATCTCTCTTACAGTCAGCTTCAGAAACTTTGGGCAGGAACCAAGAGCCT 3092
||||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||| |||
Sbjct 1668 TGTTGAACTCAATCTGTCTTATAGTCAGCTTCATAAACTTTGGGGAGGAACTAAGAACCT 1727
Query 3093 CGAGATGCTGAAGGTGGTCAAGCTTTGTCATTCCCAACAGCTTACTGCGATTGACGATAT 3152
||||||||||||| |||||| ||||||||||||||| ||||| | || |||| | |||||
Sbjct 1728 CGAGATGCTGAAGATGGTCAGGCTTTGTCATTCCCAGCAGCTAAATGAGATTAATGATAT 1787
Query 3153 T-TTAAAAGCTCAAAATATCGAGCTAATTGATCTCCAAGGCTGTAGAAAATTGCAGAGGT 3211
| | ||||||||||||||||||||||| |||||||| || ||| |||| ||||||| |
Sbjct 1788 TGGT-AAAGCTCAAAATATCGAGCTAATAGATCTCCAGGGGTGTTCAAAACTGCAGAGTT 1846
Query 3212 TTCCAGCCACGGGTCAATTACAACATCTCCGAGTTGTAAATCTCTCAGGTTGTAGAGAGA 3271
||||||||| |||||||||||| ||||| ||||||||||| || |||||||| | ||||
Sbjct 1847 TTCCAGCCATGGGTCAATTACAGCATCTACGAGTTGTAAACCTTTCAGGTTGCACTGAGA 1906
Query 3272 TCAAAAG-TTTCCCAGAAGTTTCACCAAATATTGAGGAACTACATCTCCAGGGAACTGGC 3330
| | ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TTAGAAGCTTT-CCAGAGGTTTCACCAAATATTGAGGAACTACATCTCCAGGGAACTGGC 1965
Query 3331 ATAAGAGAATTACCAATATCCATTGTGTCCCTCTTCGAACAAGCTAAGTTGAATCGAGAG 3390
|| |||||| |||||||||||| |||| ||||| | || | |||| |||| ||||||
Sbjct 1966 ATCAGAGAACTACCAATATCCACTGTGAACCTCTCCCCGCATGTTAAGCTGAACCGAGAG 2025
Query 3391 CTTTTC-AATCTCCTACCAGAATTCTCAGGTGTTTCAAATGCTTGGAACAATGAGCAATC 3449
|||| | ||| | ||| |||||||| |||| |||||| |||||| |||| |||||| ||
Sbjct 2026 CTTT-CGAATTTTCTAACAGAATTCCCAGGGGTTTCAGATGCTTTGAACCATGAGCGATT 2084
Query 3450 AACAAGCCTGGCCAAATTAGTCACGTCT-ACTCAAAATCTTGGCAAACTTGTTTGCCTGA 3508
| ||||| ||| || |||| ||| | ||| ||||||| ||||||||||||||||
Sbjct 2085 ACCAAGCGTGGTTGAAGCAGTCTTATCTTA-TCACCATCTTGGTAAACTTGTTTGCCTGA 2143
Query 3509 ATATGAAAGATTGTGTTCATTTGCGAAAACTGCCTTACATGGTTGATTTCGAATCTCTTA 3568
|||||||||||||||| |||||| ||| || ||| | |||| ||| || |||||||| |
Sbjct 2144 ATATGAAAGATTGTGTCCATTTGAGAAGTCTTCCTCAAATGGCTGACTTAGAATCTCTGA 2203
Query 3569 AAGTTCTTAATCTGTCTGGATGCTCAGATCTCGACGATATTGAGGGTTTCCCGCCAAATC 3628
|||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||| |
Sbjct 2204 AAGTTCTTAATCTGTCTGGATGCTCAGAGCTCGACGATATTCAGGGTTTCCCACGAAACC 2263
Query 3629 TGAAAGAGTTATATCTTGTTAGCACTGCCT-TAAAAGAACTTCCACAGCTTCCCCAAAGT 3687
|||||||||||||| ||| | |||| || | ||||| |||||||||| |||||||| |||
Sbjct 2264 TGAAAGAGTTATATATTGGTGGCACCGC-TGTAAAAAAACTTCCACAACTTCCCCAGAGT 2322
Query 3688 CTAGAAGTCTTGAATGCACATGGTTGTGTGTCTCTTTTATCAATTCCTTCCAATTTTGAG 3747
||||||||||||||||||||||| |||||||| || | ||||||||| ||| |
Sbjct 2323 CTAGAAGTCTTGAATGCACATGGCTGTGTGTCACTCAAAGCAATTCCTTTTGGTTTCAAT 2382
Query 3748 CGGCTTCCTAGGTATTACACATTCAGTAATTGCTT-TGCTCTTTCTGCA-AGCGTGGTCA 3805
| |||||||||||||||||||||||| ||| || ||||||||| || | ||| |||
Sbjct 2383 CACCTTCCTAGGTATTACACATTCAGTGGTTG-TTCTGCTCTTTCACCACAA-GTGATCA 2440
Query 3806 -ATGAATTTGTA--AAGAACGCTCTGACTAATGTAGCACACATCGCGAGAGAGA--AA-C 3859
| ||||| || || || |||||| || |||||| | ||| || |||||| || |
Sbjct 2441 CAA-AATTTTTAGCAA-AA-GCTCTGGCTGATGTAGAAGGCATAGCAAGAGAGTTTAAGC 2497
Query 3860 AGGAACTCAACAAATCTTTGGCTCTCAACTTTACTGTGCCTTCACCTGAAAGTAAAAATA 3919
||||||||||| ||||| ||||| ||| ||| | |||||||||||||| || |||||| |
Sbjct 2498 AGGAACTCAACGAATCTCTGGCTTTCAGCTTCAGTGTGCCTTCACCTGCAACTAAAAA-A 2556
Query 3920 TC-ACATTTGATCTGCAACCAGGGTCTTCCGTGATC-ATACAACTGGGT--T-CTTC-AT 3973
| ||| || |||||| | |||| ||||| | | | || | ||||| | | |||| ||
Sbjct 2557 CCCACACTTAATCTGCCAGCAGGATCTTCTGCAA-CGATGCGACTGGATCCTTCTTCTAT 2615
Query 3974 GGAG-ACTCATTC-GCGGTTTTGCTAT-TTTAGTCGAAGTTGCATTTTTGGAGGAATACC 4030
|| || | | | | || |||| ||| |||| | ||||||||| ||| ||| || |||
Sbjct 2616 A-AGCACGC-TCCTG-GGCTTTGTTATATTTATT-GAAGTTGCAATTTCGGATGATTACG 2671
Query 4031 A-G-G-CTGGTGCTTTTAGCATTAGTTGTGTTTGCAGATGGAAAGACACTGAATGTGTAT 4087
| | | || || |||| | |||| |||||| | ||||||||||||| ||| | || |
Sbjct 2672 ATGAGGCTATTGGTTTTGGTGTTAGGTGTGTTCGGAGATGGAAAGACAAGGAAGGCGTCT 2731
Query 4088 CTCATAGG-CTGGaaaaaaaCTTC-CATTGTTGGATTCCAGGGGAAGGTGTTC-C----- 4139
|| | | | || ||||||| ||| |||||||||| ||||||||||||| ||| |
Sbjct 2732 CT-AGAAGTCTAGAAAAAA-CTTTTCATTGTTGGACTCCAGGGGAAGGTTTTCACAAGTT 2789
Query 4140 -CAA--GGATCACATGTTTGTCTTCTGTGATTTCGATATGCAT-CTGACTGCCTG-TGAA 4194
||| |||||| ||||||||||||||||| || || ||||| | | | | || | ||
Sbjct 2790 TCAAAAGGATCATTTGTTTGTCTTCTGTGATCTCAATTTGCATGC-GTTTTC-TGGTAAA 2847
Query 4195 GGAAATGACTCCAG-TATATTGGCTGATCTTGTCGTATTTGAATTCTTTACTGTGAACAA 4253
||| | ||| |||| |||||| |||| || || |||||||| |||||| | || |||||
Sbjct 2848 GGAGAGGAC-CCAGATATATTCGCTGGGCTGGTTGTATTTGATTTCTTTCCCGTCAACAA 2906
Query 4254 GCAGAAAAAGCTTCTAGATGGGAGTTGTGCAGTGACGAGATGTGGAGTC 4302
||| | ||||||||||||||||| ||| | |||| ||| |||||||||
Sbjct 2907 TCAGGAGAAGCTTCTAGATGGGAGCTGTACGGTGAAGAGTTGTGGAGTC 2955
> Ahg915586 jgi|Araly1|915586|Al_scaffold_0008_337
Length=3783
Score = 1027 bits (556), Expect = 0.0
Identities = 1597/2081 (77%), Gaps = 145/2081 (7%)
Strand=Plus/Plus
Query 1689 ACTTGTGGAAGAGATTGTCAAAGATGTGCATGAGAAACTCTTTCCCACGGAACAAATCGG 1748
|||||| ||||||||||| | ||||||| | ||||| |||||| | || || ||| ||
Sbjct 393 ACTTGTAGAAGAGATTGTGAGAGATGTGTACGAGAAGCTCTTTTATAAGGGACGAATTGG 452
Query 1749 AATCAACTCGAGGCTGCTGGAGATGGAACATTTGCTTTGCAAGCAACC-ATGGGGTGTCC 1807
|||| | |||| |||||||||||| ||| | || || ||||||||| || || |||
Sbjct 453 AATCTATTCGAAGCTGCTGGAGATTGAAAACATGGTTAACAAGCAACCGAT-AGGCATCC 511
Query 1808 GTCGCATAGGAATTTGGGGTATGCCCGGCATAGGCAAA-ACTACACTTGCTAAAGCATTT 1866
|| | | ||||||||||||||||| |||||||| ||| || ||||||||||||||| |
Sbjct 512 GTTGTGTTGGAATTTGGGGTATGCCTGGCATAGG-AAAGACAACACTTGCTAAAGCAGTC 570
Query 1867 TTTGACCAAATCTCTGGTGGCTATGAAGCTTCTTGTTTCATCAAACACTTTGACAAGGCT 1926
||||||||||| ||| | | || ||| ||||||||||| ||| | ||| |||||| |||
Sbjct 571 TTTGACCAAATGTCTAGCGCCTTTGATGCTTCTTGTTTTATCGAGGACTATGACAAAGCT 630
Query 1927 TTT-AGTGGGAAGGGGCTTCACCGTTTGCTGGAGGAACATTTTGGGAAAATTTTGAAGGA 1985
||| | || |||||| ||| | ||||||||||||||| || |||| || ||
Sbjct 631 TTTCA-TGAGAAGGGTCTTTATTGTTTGCTGGAGGAAC---------AACTTTTCAAAGA 680
Query 1986 ATTGCCTCGTG-TATGCA-G-TAGCATTACGAGACCT-AGCCTC-CCCAGGGACAAATT- 2039
| || || | ||| | | | ||||| || | || || ||| | ||| |||| |||
Sbjct 681 A-AACC-CGGGCAATG-ACGCAACCATTATGA-AACTGAG-CTCGCTCAGAGACAGATTG 735
Query 2040 AAGCAAG-AAGAGAACTCTTGTTGTTCTTGATGATGTGCACAATCCTTTGGTTGCCGAGT 2098
|| | || |||||| |||||||||||| |||||||||| |||| || |||||| ||||
Sbjct 736 AA-C-AGTAAGAGAGTTCTTGTTGTTCTCGATGATGTGCGCAATGCTCTGGTTGTAGAGT 793
Query 2099 CTTTTCTCGAAGGGTTTCATTGGTTCGG-CCCGGGAAGCCTAATCATCATAACGTCCAGA 2157
|||||||||| |||||| | ||| | || ||| |||||| | |||||||||||||| |||
Sbjct 794 CTTTTCTCGAGGGGTTTGACTGGCTAGGACCC-GGAAGCTTGATCATCATAACGTCTAGA 852
Query 2158 GATAAACAAGTGTTCCGCCTTTGTCAG-ATCAATCATGTGTATGAGGTTCAGAGCTTT-A 2215
|||||||| ||||| |||||||| | | |||||||| | |||||||| ||| | ||| |
Sbjct 853 GATAAACAGGTGTTTCGCCTTTG-CGGAATCAATCAAATATATGAGGTCCAG-GGTTTAA 910
Query 2216 ATGAGAATGAGGCTCTGCAGCTGTTCTCT-CAGTGTGCTTTTAGAAGAGATATAAATGAA 2274
||||||| || ||||| || || |||| | | ||| || | | | ||| | ||
Sbjct 911 ATGAGAAAGAAGCTCTTCAACTATTCT-TGCTGTGCGCGTCT--ATGAG------A-GAG 960
Query 2275 CAAAATCTGCTGGAACTATCACTGAAAGTGA-TTGACTATGCTAGTGGAAATCCATTAGC 2333
|| ||||| | || | ||| ||||||| | | | ||||||| |||||| || |||||
Sbjct 961 CAGAATCTCCACGAGTTGTCAGTGAAAGT-AGTAAATTATGCTAATGGAAACCCGTTAGC 1019
Query 2334 TCTCAGCT-TTTACT-GCAGAGTGCT-TAAGG---GAAAGGAACTTTCAGAAATGGAGAC 2387
| |||| | |||| | | |||| ||| |||| |||| |||| ||||||||||| ||
Sbjct 1020 TATCAG-TGTTTA-TGGAAGAGAGCTGAAAGGTAAGAAA-AAACTCTCAGAAATGGAAAC 1076
Query 2388 TACATTCTTCAAACTCAAACAACGAACTCCATATAAGATTTTTGATTTGTTCAAGAGCAG 2447
||||| |||||||||| | ||| |||| | ||| ||||| ||| || || |||||
Sbjct 1077 GGCATTCCTCAAACTCAAGCGACGTCCTCCGTTTAAAATTTTCGATGCATTTAAAAGCAG 1136
Query 2448 CTACGAAACACT-TGATGACAACGAGAAGAACATTTTTCTGGACATTGCTTGTTTCTTC- 2505
|||||| |||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 CTACGACTCACTCTG-TGACAACGAGAAGAACATTTTTCTGGACATAGCTTGTTTCTTCC 1195
Query 2506 AGTGGAGAAAATGTTGACTATGTGATGCGACTACTTGAGGGGTGTGGtttttttCCACAT 2565
|| ||||||||||| |||| ||||| | ||| |||||||| |||||||| |||||||||
Sbjct 1196 AG-GGAGAAAATGTCAACTACGTGATACAACTGCTTGAGGGTTGTGGTTTCTTTCCACAT 1254
Query 2566 GTTGGGATTGATGTTCTTGTGGAGAACTGTCTGGTGACTATTTCAGAAAACAGAGTGAAA 2625
|||| |||||||| ||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 1255 GTTGAAATTGATGTCCTTGTTGAGAAGTGTCTGGTGACTATTTCAGAAAACCGAGTTTGG 1314
Query 2626 ATGCATAGAA-TAATCCAAGACT-TTGGCCGAGAAATAATCGATGGAGAAACAGTACAGA 2683
|||||| | | | ||| || | |||||||||||||||| ||||||||||||||||||
Sbjct 1315 CTGCATA-ATCTGACCCAGGA-TGTTGGCCGAGAAATAATAAATGGAGAAACAGTACAGA 1372
Query 2684 TCGAGAGGCGTC-GCAGACTGTCAGATCCTTGGAGCATCAAAT-TCCTTCTT-GAAGATG 2740
|||||||||| | | ||||||| || |||||||||||||||| | || || ||| ||
Sbjct 1373 TCGAGAGGCG-CAGAAGACTGTGGGAACCTTGGAGCATCAAATAT--TTATTAGAATATA 1429
Query 2741 ACGAACTCGAAGCAAATGAAGATCCCAAAGCAACATAT-ACTCGTACTCTGGGCACTGAA 2799
| || | | |||| || ||| || ||| |||| | | | ||| ||| |||| ||||
Sbjct 1430 ATGAGCACAAAGCCTGTGGAGAACCTAAAACAACCT-TCAAACGTGCTCAGGGCTCTGAC 1488
Query 2800 GATATCGAAGGCATACTTCTGGACACATCGAACTTAACATTTGATGTGAAGCC-TGGTGC 2858
|| ||||||||||| |||| |||||||| ||||||| |||||||||| |||| | |||
Sbjct 1489 GAGATCGAAGGCATGTTTCTTGACACATCAAACTTAAGATTTGATGTGCAGCCCTC-TGC 1547
Query 2859 CTTTGAGAATATGCT-AAGCCTTAGATTCCTGAAGATTTATTGTTCCAGTTATGAAAACC 2917
|||| |||||||| | || ||||||||| || || ||||| ||||||| | |||| ||
Sbjct 1548 CTTTAAGAATATGTTGAA-CCTTAGATTGCTCAAAATTTACTGTTCCAATCCTGAAGTCC 1606
Query 2918 AT--TATAGCCTCCGCCTTCCG-AAAGGA-CT-TA-AGTT-TCTGCCTGATGAGCTAAGA 2970
|| | || || |||| ||||| || | | || ||| ||| |||||||||||
Sbjct 1607 ATCGTGTAA--TCAAT-TTCCCCAAAGGCTCTCTGCA-TTCTCTTCCTAATGAGCTAAGA 1662
Query 2971 CTCCTCCACTGGGAGAACTATCCTTTGCAATCCTTGCCACAAGACTTT-GATCC-ATGCC 3028
|||||||| ||||||||||||||| ||||||| ||||| ||| | ||| ||||| | ||
Sbjct 1663 CTCCTCCATTGGGAGAACTATCCTCTGCAATCTTTGCCTCAA-AGTTTTGATCCTAGGC- 1720
Query 3029 ACCTTGTTGAACTCAATC-T-CTCTTACAGTCAGCTTCAGAAACTTTGGGCAGGAACCAA 3086
||||||| ||| |||| | | | | |||||||| ||||| |||||||||| ||||||||
Sbjct 1721 ACCTTGTCGAAATCAA-CATGC-CGTACAGTCAACTTCAAAAACTTTGGGGTGGAACCAA 1778
Query 3087 GAGCCTCGAGATGCTGAAGGTGG-TCAAGCTTTGTCATTCCCAACAGCTTACTGCGAT-T 3144
|| ||| |||||| ||| || | ||| |||||| |||||||| || || | | ||| |
Sbjct 1779 GAACCTGGAGATGTTGA-GGACGATCAGGCTTTGCCATTCCCAGCATCT-AGTT-GATAT 1835
Query 3145 -GACGATATTTTAAAAGCTCAAAATATCGAGCTAATTGATCTCCAAGGCTGTAGAAAATT 3203
|| ||| | ||||||||||||||| | ||| |||||||||||||||| |||| || | |
Sbjct 1836 CGATGATCTCTTAAAAGCTCAAAATCTTGAGGTAATTGATCTCCAAGGTTGTACAAGACT 1895
Query 3204 GCAGAGGTTTCC-AGCCACGGGTCAATTACAACATCTCCGAGTTGTAAATCTCTCAGGTT 3262
||||| ||||| |||| | |||||||| | | ||| ||||||||||||||||||||||
Sbjct 1896 GCAGAA-TTTCCCAGCCGCAGGTCAATTGCTGCGTCTACGAGTTGTAAATCTCTCAGGTT 1954
Query 3263 GTAGAGAGATCAAAAGTTTCCCAGAAGTTTC-ACCAAATATTGAGGA-ACTACATCTCCA 3320
| | |||||| |||||| ||| ||| | | | ||||||||||||| | ||||||||| ||
Sbjct 1955 GCATAGAGATTAAAAGTGTCCTAGA-GATGCCACCAAATATTGAG-ACACTACATCTACA 2012
Query 3321 GGGAACTGGCATAAGAGAATTACCAATATCCATTGTGTCC-CTCTTCGAACAAGCTAAGT 3379
||||||||||||| ||| || | |||| | | ||| || || || || ||
Sbjct 2013 GGGAACTGGCATA------TTAGCATT-TCCAGT-T-TCCACTGTT--AA---GCCAAAC 2058
Query 3380 TGAATCGAGAGCTTTTCAATCTCCTACCAGAA-TTCTCAGGTGTTTCAAATGC-TTGGAA 3437
| | |||||||| | ||| | ||| ||||| ||| | ||| ||||| | || ||| ||
Sbjct 2059 CGCA--GAGAGCTTGTGAATTTTCTAACAGAAATTC-CGGGTCTTTCAGAGGCCTTGAAA 2115
Query 3438 CAATGAGCAATCAACAAGCCTGGCCA-AAT-TAG-TCACGTCTACTCAAAATCTTGGCAA 3494
| ||||| | |||||| ||| | ||| ||| ||| ||| |||| ||||||| ||
Sbjct 2116 CT-TGAGCGTTTAACAAGTCTG-CTGGAATCTAGCTCA--TCTTGTCAAGATCTTGGGAA 2171
Query 3495 ACTTGTTTGCCTGAA-TATGAAAGATTGTGT-TCATTTGCGAAAA-CTGCCTTACATGGT 3551
||| ||||| || | | ||||| ||||| | || ||||| ||| ||||| ||||||
Sbjct 2172 GCTTATTTGCTTGGAGT-TGAAATATTGT-TCTCGTTTGC-AAAGTCTGCCAAACATGGC 2228
Query 3552 TGATTTCGAATCT-CTTAAAGTTCTTAATCTGTCTGGATGCTCA-GATCTCGACGATATT 3609
| |||| || ||| ||||| ||||| |||| || || |||||| | ||| | ||||
Sbjct 2229 TAATTTAGA-TCTTCTTAATCTTCTTGATCTCTCGGGTTGCTCAAGG-CTCAATTCTATT 2286
Query 3610 GAGGGTTTCCCGCCAAATCTGAAAGAGTTATATCTTGTTAGCACTGCCTTAAAAGAACTT 3669
|||||||||| | ||||||| |||||||||||| | ||||||| |||||||| |
Sbjct 2287 CAGGGTTTCCCTCGGTTTCTGAAAAAGTTATATCTTGGTGGCACTGCAATAAAAGAAGTG 2346
Query 3670 CCACAGCTTCCCCAAAGTCTAGAAGTCTTGAATGCACATGG 3710
||||| ||||| |||||||||||| |||||||||||| |||
Sbjct 2347 CCACAACTTCCTCAAAGTCTAGAACTCTTGAATGCACGTGG 2387
> Ahg905843 jgi|Araly1|905843|Al_scaffold_0003_2971
Length=1170
Score = 187 bits (101), Expect = 6e-46
Identities = 163/192 (85%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 1099 GCACATGAAATGTTGAAAGACAA-GAAAGTGGTACTTGTTCTTGATGATGTGGA-CAGCA 1156
||||| |||| |||||||||||| |||| | | || |||||||||||||| || | |
Sbjct 613 GCACAAGAAAGGTTGAAAGACAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATC-GGT 670
Query 1157 TAGGACAATTAGATGCCTTGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTA 1216
||| |||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 671 TAGAACAACTGGATGCCTTGGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTA 730
Query 1217 TCATCACAACACAAGATCAAAGACTTTTAGAGGAACAAGGGATCCA--ATATATATACAA 1274
|||||||||||||||||| |||| ||||||||| ||| |||||| | |||| |||| ||
Sbjct 731 TCATCACAACACAAGATCTAAGAGTTTTAGAGGCACATGGGATCAACCATATTTATA-AA 789
Query 1275 CGTGGATTTTCC 1286
|||||||||||
Sbjct 790 -GTGGATTTTCC 800
> Ahg887980 jgi|Araly1|887980|Al_scaffold_0786_1
Length=591
Score = 187 bits (101), Expect = 6e-46
Identities = 163/192 (85%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 1099 GCACATGAAATGTTGAAAGACAA-GAAAGTGGTACTTGTTCTTGATGATGTGGA-CAGCA 1156
||||| |||| |||||||||||| |||| | | || |||||||||||||| || | |
Sbjct 175 GCACAAGAAAGGTTGAAAGACAAGGAAA-TATTTCTCGTTCTTGATGATGTTGATC-GGT 232
Query 1157 TAGGACAATTAGATGCCTTGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTA 1216
||| |||| | |||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 233 TAGAACAACTGGATGCCTTGGCAAAAGAAACTCGGTGGTTTGGTCCTCGAAGTCGGATTA 292
Query 1217 TCATCACAACACAAGATCAAAGACTTTTAGAGGAACAAGGGATCCA--ATATATATACAA 1274
|||||||||||||||||| |||| ||||||||| ||| |||||| | |||| |||| ||
Sbjct 293 TCATCACAACACAAGATCTAAGAGTTTTAGAGGCACATGGGATCAACCATATTTATA-AA 351
Query 1275 CGTGGATTTTCC 1286
|||||||||||
Sbjct 352 -GTGGATTTTCC 362
> Ahg891927 jgi|Araly1|891927|Al_scaffold_0007_3913
Length=2511
Score = 139 bits (75), Expect = 2e-31
Identities = 209/270 (77%), Gaps = 23/270 (9%)
Strand=Plus/Plus
Query 1027 CAGTTACA-AAGCCATTTACTGTCTCAACTATTAAATCACAAGTTTACTGGTGAGATTCT 1085
|||||||| || | |||| |||| ||| || | || |||||| || | | ||| |||
Sbjct 304 CAGTTACAGAAACAATTT-TTGTCCCAAATAATCAACCACAAGGATA-T-G-GAGCTTCC 359
Query 1086 TCAATT-GGAAGCTGCACATGAAATGTTGAAAGACAAGAAAGTG-GTACTTGTTCTTGAT 1143
||| || || || |||||| || | |||||| ||||||| |||| || |||||||||||
Sbjct 360 TCATTTAGG-AGTTGCACAAGATAGGTTGAACGACAAGAGAGTGCTTA-TTGTTCTTGAT 417
Query 1144 -G-ATGTGGA-C-AGCATAGGACAATTAGATGCCT-TGGCAAACGAAGCTCGGTGGTTTG 1198
| || | || | | || | |||| |||||| || | ||||| ||| |||||||||| |
Sbjct 418 AGCAT-T-GATCAATCA-A-TACAACTAGATG-CTATCGCAAAAGAAACTCGGTGGTTCG 472
Query 1199 GTCCTGGAAGTCGGATTATCATCACAACACAAGATCAAAGACTTTTAGA-GGAACAAGGG 1257
||| |||||||||||||||||||||||||||||| ||| | ||||| || || ||| ||
Sbjct 473 GTCATGGAAGTCGGATTATCATCACAACACAAGACCAACGGCTTTT-GAAGGCACATGGC 531
Query 1258 ATCCAAT-ATATATACAACGTGGATTTTCC 1286
||| || |||| ||||| ||||| |||||
Sbjct 532 ATC-AACCATATTTACAAGGTGGAGTTTCC 560
> Ahg891930 jgi|Araly1|891930|Al_scaffold_0007_3916
Length=2952
Score = 137 bits (74), Expect = 6e-31
Identities = 195/250 (78%), Gaps = 21/250 (8%)
Strand=Plus/Plus
Query 1046 TGTCTCAACTATTAAATCACAAGTTTACTGGTGAGATTCTTCAATT-GGAAGCTGCACAT 1104
|||| ||| || | || |||||| || | | ||| ||| ||| || || || ||||||
Sbjct 959 TGTCCCAAATAATCAACCACAAGGATA-T-G-GAGCTTCCTCATTTAGG-AGTTGCACAA 1014
Query 1105 GAAATGTTGAAAGACAAGAAAGTG-GTACTTGTTCTTGAT-G-ATGTGGA-C-AGCATAG 1159
|| | |||||| ||||||| |||| || ||||||||||| | || | || | | || |
Sbjct 1015 GATAGGTTGAACGACAAGAGAGTGCTTA-TTGTTCTTGATAGCAT-T-GATCAATCA-A- 1069
Query 1160 GACAATTAGATGCCT-TGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTATC 1218
|||| |||||| || | ||||| ||| |||||||||| |||| ||||||||||||||||
Sbjct 1070 TACAACTAGATG-CTATCGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCGGATTATC 1128
Query 1219 ATCACAACACAAGATCAAAGACTTTTAGA-GGAACAAGGGATCCAAT-ATATATACAACG 1276
|||||||||||||| ||||| ||||| || || ||| || ||| || |||| ||||| |
Sbjct 1129 ATCACAACACAAGACCAAAGGCTTTT-GAAGGCACATGGCATC-AACCATATTTACAAGG 1186
Query 1277 TGGATTTTCC 1286
|||| |||||
Sbjct 1187 TGGAGTTTCC 1196
> Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922
Length=3162
Score = 126 bits (68), Expect = 1e-27
Identities = 193/250 (77%), Gaps = 21/250 (8%)
Strand=Plus/Plus
Query 1046 TGTCTCAACTATTAAATCACAAGTTTACTGGTGAGATTCTTCAATT-GGAAGCTGCACAT 1104
|||| ||| || | || |||||| || | | ||| ||| ||| || || || ||||||
Sbjct 956 TGTCCCAAATAATCAACCACAAGGATA-T-G-GAGCTTCCTCATTTAGG-AGTTGCACAA 1011
Query 1105 GAAATGTTGAAAGACAAGAAAGTG-GTACTTGTTCTTGAT-G-ATGTGGA-C-AGCATAG 1159
|| | |||||| ||||||| ||| || ||||||||||| | || | || | | || |
Sbjct 1012 GATAGGTTGAACGACAAGAGGGTGCTTA-TTGTTCTTGATAGCAT-T-GATCAATCA-A- 1066
Query 1160 GACAATTAGATGCCT-TGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTATC 1218
|||| |||||| || | ||||| ||| |||||||||| |||| ||||||||||||||||
Sbjct 1067 TACAACTAGATG-CTATCGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCGGATTATC 1125
Query 1219 ATCACAACACAAGATCAAAGACTTTTAGA-GGAACAAGGGATCCAAT-ATATATACAACG 1276
|||||||||||||| ||| | ||||| || || ||| || ||| || |||| ||||| |
Sbjct 1126 ATCACAACACAAGACCAACGGCTTTT-GAAGGCACATGGCATC-AACCATATTTACAAGG 1183
Query 1277 TGGATTTTCC 1286
|||| |||||
Sbjct 1184 TGGAGTTTCC 1193
> Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919
Length=3678
Score = 126 bits (68), Expect = 1e-27
Identities = 193/250 (77%), Gaps = 21/250 (8%)
Strand=Plus/Plus
Query 1046 TGTCTCAACTATTAAATCACAAGTTTACTGGTGAGATTCTTCAATT-GGAAGCTGCACAT 1104
|||| ||| || | || |||||| || | | ||| ||| ||| || || || ||||||
Sbjct 1490 TGTCCCAAATAATCAACCACAAGGATA-T-G-GAGCTTCCTCATTTAGG-AGTTGCACAA 1545
Query 1105 GAAATGTTGAAAGACAAGAAAGTG-GTACTTGTTCTTGAT-G-ATGTGGA-C-AGCATAG 1159
|| | |||||| ||||||| ||| || ||||||||||| | || | || | | || |
Sbjct 1546 GATAGGTTGAACGACAAGAGGGTGCTTA-TTGTTCTTGATAGCAT-T-GATCAATCA-A- 1600
Query 1160 GACAATTAGATGCCT-TGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCGGATTATC 1218
|||| |||||| || | ||||| ||| |||||||||| |||| ||||||||||||||||
Sbjct 1601 TACAACTAGATG-CTATCGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCGGATTATC 1659
Query 1219 ATCACAACACAAGATCAAAGACTTTTAGA-GGAACAAGGGATCCAAT-ATATATACAACG 1276
|||||||||||||| ||| | ||||| || || ||| || ||| || |||| ||||| |
Sbjct 1660 ATCACAACACAAGACCAACGGCTTTT-GAAGGCACATGGCATC-AACCATATTTACAAGG 1717
Query 1277 TGGATTTTCC 1286
|||| |||||
Sbjct 1718 TGGAATTTCC 1727
> Ahg497514 jgi|Araly1|497514|fgenesh2_kg.686__1__AT5G38350.1
Length=2166
Score = 122 bits (66), Expect = 2e-26
Identities = 156/197 (79%), Gaps = 16/197 (8%)
Strand=Plus/Plus
Query 1098 TGCACATGAAATGTTGAAAGACAAGAAAGTG-GTACTTGTTCTTGAT-G-ATGTGGA-C- 1152
|||||| || | |||||| ||||||| ||| || ||||||||||| | || | || |
Sbjct 12 TGCACAAGATAGGTTGAACGACAAGAGGGTGCTTA-TTGTTCTTGATAGCAT-T-GATCA 68
Query 1153 AGCATAGGACAATTAGATGCCT-TGGCAAACGAAGCTCGGTGGTTTGGTCCTGGAAGTCG 1211
| || | |||| |||||| || | ||||| ||| |||||||||| |||| |||||||||
Sbjct 69 ATCA-A-TACAACTAGATG-CTATCGCAAAAGAAACTCGGTGGTTCGGTCATGGAAGTCG 125
Query 1212 GATTATCATCACAACACAAGATCAAAGACTTTTAGA-GGAACAAGGGATCCAAT-ATATA 1269
||||||||||||||||||||| ||| | ||||| || || ||| || ||| || ||||
Sbjct 126 GATTATCATCACAACACAAGACCAACGGCTTTT-GAAGGCACATGGCATC-AACCATATT 183
Query 1270 TACAACGTGGATTTTCC 1286
||||| ||||| |||||
Sbjct 184 TACAAGGTGGAGTTTCC 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 182562177681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5