BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36150.1
Length=3597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888440 jgi|Araly1|888440|Al_scaffold_0007_426 3825 0.0
> Ahg888440 jgi|Araly1|888440|Al_scaffold_0007_426
Length=3537
Score = 3825 bits (2071), Expect = 0.0
Identities = 3080/3555 (87%), Gaps = 117/3555 (3%)
Strand=Plus/Plus
Query 106 CCGCAGCATCAAGTCTTCCTCAATTTCCGAGGGAAACAACTGCGGAACGGTTTCGTCAGC 165
|||||||||||||| ||| | ||||| |||||||| ||| ||||||| ||||| ||||||
Sbjct 37 CCGCAGCATCAAGTTTTCATGAATTTTCGAGGGAAGCAATTGCGGAAGGGTTTTGTCAGC 96
Query 166 CATCTGGAGAAAGCCTTGAGGAGGGATGGAATCAACGTCTTTATCGACAGAA-ACGAAAC 224
||||| ||||| ||||||| |||||||||||||||| |||||||||| ||| | |||||
Sbjct 97 CATCTAGAGAAGGCCTTGAAAAGGGATGGAATCAACGCCTTTATCGAC-GAAGATGAAAC 155
Query 225 CAAAGGTAGA-GATCTCAGTAACCT-TTTCTCGAGAATCCAGGAGTCGAGGATCGCGCTC 282
| ||||| | |||||||| | ||| ||| || ||||| | ||||||||||||||||||
Sbjct 156 TAGAGGTA-ATGATCTCAGCATCCTCTTT-TCCAGAATTGATGAGTCGAGGATCGCGCTC 213
Query 283 GCCATTTTCTCTAGCATGTATACGGAGTCGTATTGGTGCTTGGACGAGCTTGTGAAGATT 342
|| || ||||| ||||||||||||||||| ||||||| || |||||||| ||||| ||
Sbjct 214 GCGATCTTCTCGAGCATGTATACGGAGTCAAATTGGTGTTTAGACGAGCTGGTGAAAATA 273
Query 343 AAGGATTGTGTTGACTTAGGCACACTTGTCGTTATTCCCATCTTCTACATGGTGGACACA 402
||||| || |||||||| |||| |||||| || |||||||||||||||| |||||| |||
Sbjct 274 AAGGAGTGCGTTGACTTGGGCAAACTTGTTGTAATTCCCATCTTCTACAAGGTGGAAACA 333
Query 403 GACGATGTCAAAAACCTAAAGGGCGCT-TTTGGTTACACGTTCTGGAAATTGGCTAAGAC 461
|||||||| ||||| |||||||| | | |||||| ||| ||| ||| |||||| ||||||
Sbjct 334 GACGATGTGAAAAATCTAAAGGGAG-TCTTTGGTGACAAGTTTTGGGAATTGGTTAAGAC 392
Query 462 TTGTAATGGTGAAAAGCTCGATAAGTGGAAACAAGCTTTAAAGGATGTTC-CTAAA-AAG 519
|||||||||||||||||||||||||||||| |||||||||||| || || | ||| |||
Sbjct 393 ATGTAATGGTGAAAAGCTCGATAAGTGGAAAGAAGCTTTAAAGGTTG-TCAC-AAACAAG 450
Query 520 CTTGGCTTTACGTTGA-GCGAAATGAGCGATGAAGGCGAATCCATCAATCAAATTGTAGG 578
| ||||| ||||| | ||||||||||| ||||||| |||| | | | |||||||| |
Sbjct 451 ATGGGCTTCACGTT-AGGCGAAATGAGCAATGAAGGTGAATACGTTGAGAAAATTGTAAG 509
Query 579 GGAAGTCATA-AAGGTGCTATCATCTGATGTTAT-GCCTGATCTAG-AAAGGGAAATCCC 635
| |||||||| || |||| | |||| ||||| | | | ||||| | |||| ||| ||||
Sbjct 510 GCAAGTCATAGAA-GTGC--T-ATCTAATGTT-TCGACGGATCT-GAAAAGAGAAGTCCC 563
Query 636 CATTGATGATCCTTTTCCA--A-CAGGAGAACAAGTACCTGAAGCTGCTCCTGACTCGCC 692
|||||| || |||| | || | ||||||| | | ||||||||||||||||||||||
Sbjct 564 CATTGACGACCCTTCTGCAGGAGAAGGAGAA-ACG--CCTGAAGCTGCTCCTGACTCGCT 620
Query 693 TCCTCCTCTGTTTGGCATTGAA-ACACGACTTAAGCAATTGGAAGAGAAGTTGGATTTTG 751
||||| ||||||||||| | || ||||||||| |||| |||||||||||||| |||||||
Sbjct 621 TCCTCATCTGTTTGGCA-TCAACACACGACTTCAGCAGTTGGAAGAGAAGTTAGATTTTG 679
Query 752 AGTGCAAGGA-TACTCTTACCATTGGTGTTGTTGGGATGCCTGGTATTGGTAAGACCACT 810
||||||| || ||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 680 AGTGCAA-GAGTACGCTTATTATTGGTGTTGTTGGGATGCCGGGTATTGGTAAGACCACC 738
Query 811 CTGACTAGTATGCTT-TATGAAAAGTGGCAACACGATTTCCTACGCTGTGTTTTTCTTCA 869
||||| |||||| || |||||||| |||||| || |||||| || ||| ||||||||
Sbjct 739 CTGACGAGTATG-TTGTATGAAAATTGGCAAGGCGGGTTCCTAAGCCGTGCCTTTCTTCA 797
Query 870 TGATGTCCGT-AAGATGTGGAAA-GACTGCA-T-GATGG---AT-CGGAGCATTTTCATT 921
||||||| || || |||| |||| | || || | | || || ||| |||| ||| |
Sbjct 798 TGATGTCAGTCAA-ATGTCGAAACG-CTACACTAAACGGCAAATGAGGAACATTCTCA-T 854
Query 922 GA-AGAGTTGTTGAAGGATGATAACGTGAACCAAGAAGTCGCTGACTTTTCACCTGAATC 980
|| |||||||||||||| | | || |||| ||| ||||||||||| | || ||| ||||
Sbjct 855 GACGGAGTTGTTGAAGGAAGTTGACTTGAAGCAAAAAGTCGCTGACATGTCGCCTAAATC 914
Query 981 CTTGAAGGCACTCCTACTGAGTAAGAAATCTCTTGTTGTTCTTGATAATGTGAGCGACAA 1040
||||||||||| ||| || |||| |||||||||| ||||||||||||||||||| |||||
Sbjct 915 CTTGAAGGCACACCTGCTCAGTATGAAATCTCTTATTGTTCTTGATAATGTGAGTGACAA 974
Query 1041 GAAACAGAT-AGAGGTTCTTCTCGGGGAATCA-GACTGGATTAAGAGAGGTAGTAGAA-T 1097
||||||||| | ||| |||||||| |||| | ||||||||||||| |||||| |||| |
Sbjct 975 GAAACAGATCA-AGGATCTTCTCGAGGAA-GATGACTGGATTAAGATAGGTAGCAGAATT 1032
Query 1098 CTTTATCACAACTAGCGACAGGTCGGTGATCGAGGGGATGGTTGATGATACATATGAGGT 1157
||| |||| || ||||||| || ||||||||||||||||| ||||| |||||||||||
Sbjct 1033 ATTT-TCACGACAAGCGACATCTCAGTGATCGAGGGGATGGTCGATGACACATATGAGGT 1091
Query 1158 CCTGAGATTGACTGGTAGAGACAGCTTTGAGTACTTTAGCTATTTTGCCTTTAGTGGTAA 1217
|| ||||||||||| |||||||||||||| ||||| ||| |||||||||||| | |||
Sbjct 1092 CCAAAGATTGACTGGCAGAGACAGCTTTGACTACTTCAGCCATTTTGCCTTTAATTTTAA 1151
Query 1218 GCTTTGTCCTCCAGTGAG-AACTTTCATGAATCTGTCTAGATTGTTTGCGGATTATGCTA 1276
||| | |||| | | | || |||||| ||||| ||||||||||||| ||||||||| |
Sbjct 1152 ACTTCCTACTCCGGAGGGTAA-TTTCATTAATCTTTCTAGATTGTTTGTGGATTATGCCA 1210
Query 1277 AAGGCAACCCATTAGCTCTCAAGATATTGGGTAAGGAGCTAAATGGAAAAGACA-AG-AC 1334
|||| |||||||||| |||||||||||||||| ||||| | ||||||| | | || |
Sbjct 1211 AAGGAAACCCATTAGTTCTCAAGATATTGGGTGTCGAGCTTAGTGGAAAA-AAAGAGAAA 1269
Query 1335 TCACTGGGA-AGAGAAACTTAGCAAGCT-G-ATGCAAAGTCCCAATAAGACA-ATACAAG 1390
| ||| ||| ||| || ||| || || | | | | ||||||||| ||||| | ||||||
Sbjct 1270 T-ACT-GGACAGATAAGCTTCGCGAGTTGGCA-G-AAAGTCCCATTAAGA-AGTTACAAG 1324
Query 1391 ATGTCTTGCGGGTAAGCTATGATGAACTAGGTTTGTC-TCACAAAGATGTCTTTCTTGAT 1449
||||||||||| | |||||||||| ||||||| | | ||| |||||||| ||||| |||
Sbjct 1325 ATGTCTTGCGGATTAGCTATGATGGACTAGGTCAG-CTTCAAAAAGATGTGTTTCTCGAT 1383
Query 1450 GTCGCATGTTTCTTTAGATCAGGGGATGAGTATTACGTGAGGTGTTTAGTGGAATCTTGT 1509
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1384 GTCGCGTGTTTCTTTAGATCAGGGGATGATTATTACGTGAGGTGTTTAGTGGAGTCTTGT 1443
Query 1510 GACACTGAAG-CCATTGATACTGTGAGTGAAATAAAGGATCTTGCCAGCAAATTCTTGAT 1568
||||||| || |||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 1444 GACACTG-AGCCCATTGATGCTGTGAGTGAAATAAAGGATCTTGCCAGTAAATTCTGGAT 1502
Query 1569 AAACATTTCTGGCGGACGAGTGGAGATGCATGATTTACTGTATACATTTGGTAAGGAACT 1628
||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1503 AAACATTTCTGGCGGGCGAATGGAGATGCATGATTTACTGTATACATTTGGCAAGGAACT 1562
Query 1629 TGG-T-----TCACAAGGGTCGCGTAGGCTGTGGAACCATAAAGC-CGTTGTAGGTGCGC 1681
||| | |||||||||| |||||||||||||||||||| | | | |||| |||||||
Sbjct 1563 TGGTTCACAATCACAAGGGTTGCGTAGGCTGTGGAACCATATA-CTCATTGTTGGTGCGC 1621
Query 1682 TGAAGAATAGAGTGGGAGC---C---GTGAGAGGTATTTTTCTTGACATGTCTGAACTGA 1735
||||||| |||| |||||| | ||||||||||||||||| ||||||| ||||||||
Sbjct 1622 TGAAGAAAAGAGCGGGAGCAGACAGTGTGAGAGGTATTTTTCTCGACATGTTTGAACTGA 1681
Query 1736 AGAAGAAACTTCCTTTGGACAGAA-GTACCTTCATC-AAGATGCGCAATCTTAGATACCT 1793
||||| ||||||||||||| | || ||||||||| | ||||||| |||||||| |||||
Sbjct 1682 AGAAGGAACTTCCTTTGGA-AAAATGTACCTTCA-CTGAGATGCGTAATCTTAGGTACCT 1739
Query 1794 CAAATTCTATAGTTCTCGTTGTGATCGA-GAATGTGAAGCTGA-TAGCAAACTAAACTTT 1851
|||||||||||||||||||||| ||| | ||| | |||||||| | ||||| |||||||
Sbjct 1740 CAAATTCTATAGTTCTCGTTGTCATC-AGGAAGGCGAAGCTGACT-GCAAAATAAACTTC 1797
Query 1852 CCGGAGGGACTTGAGTTTCCGTTGGATG-AGATACGTTACCTCTATTGGCTAAAATTCCC 1910
|| |||||| |||||||| | ||||||| || |||| || || |||||||||||||||||
Sbjct 1798 CCTGAGGGAGTTGAGTTTTCTTTGGATGAAG-TACGATATCTTTATTGGCTAAAATTCCC 1856
Query 1911 GTT-GATGAAACTTCCAAAAGACTTCAACCCCAAGAATCTTACCGACTTTAACCTGCCTT 1969
|| || |||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1857 TTTGGA-GAAACTTCCAAAAGACTTCAACCCCAAGAATCTTACCGACCTTAATCTGCCTT 1915
Query 1970 ACAGCGAGATTGAAGAGCTCTGGGAGGGGGC-TAAGGATACA-CAGAAGTTAAAGTGGGT 2027
||||||||||||||||| ||||||| ||| | |||||||||| || ||||| ||||||||
Sbjct 1916 ACAGCGAGATTGAAGAGGTCTGGGA-GGGTCTTAAGGATACACCA-AAGTTGAAGTGGGT 1973
Query 2028 TGATCTTAGCCACTCAAGAAAGTTATGCAATCTGTCAGGGTTGCTAAATGCTGAGAGTCT 2087
|||||||||||||||||| |||||||| ||||| ||||||||||||||||| | |||||
Sbjct 1974 TGATCTTAGCCACTCAAGCAAGTTATGTAATCTAACAGGGTTGCTAAATGCTAAAAGTCT 2033
Query 2088 CCAAAGACTAAATCTTGAAGGGTGCACGAGTTTGGAGGAGTTGCCTCGTGAGATGAAACG 2147
|| |||| | ||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 2034 CCGAAGATTGAATCTTGAAGGCTGCACGAGTTTGGAGGAGTTGCCTAGTGAGATGAAAAG 2093
Query 2148 CAT-GAAAAGCCTTATTTTCCTCAACATGAGAGGATGCACGAGTCTCCGGGTTCTTCCGC 2206
| || || |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TTTGGAGAA-CCTTGTTTTCCTCAACATGAGAGGATGCACGAGTCTCCGGGTTCTTCCGC 2152
Query 2207 GTATGAATCTGATCTCTTTGAAAACTCTCATCCTCACCAATTGCTCAAGCATTCAGAAAT 2266
|||||||||||||||| |||||||||||||||| ||||| ||||||||| || || |||
Sbjct 2153 ATATGAATCTGATCTCTATGAAAACTCTCATCCTTACCAACTGCTCAAGCCTTGAGGAAT 2212
Query 2267 TCCAGGTGATTTCAGATAACCTAGAAACTCTACACTTAGATGGAACTGCAATTGG-CAAA 2325
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 2213 TCCAGGTGATTTCAGATAATATAGAAACTCTATACTTAGATGGAACTGCAATTGTTCAA- 2271
Query 2326 CTTCCTACCGA-CATGGTGAAGCTCCAGAAACTGATTGTATTGAACTTGAAAGACTGCAA 2384
|||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2272 CTTCCT-CCAAACATGGTGAAGCTCCAGAGACTGATTGTATTGAACTTGAAAGACTGCAA 2330
Query 2385 AATGTT-AGGTGCAGTTCCAGAATTCCTAGGGAAGCTGAAAGCTCTGCAAGAACTGGTGC 2443
|||||| ||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||
Sbjct 2331 AATGTTGAGG-GCAGTTCCACAATGCCTGGGGAGGCTGAAAGCTCTGCAAGAACTGGTGC 2389
Query 2444 TATCTGGTTGTTCAAAGCTCAAGACTTTTTCAGTTCCTATTGAAACCATGAAATGCTTGC 2503
||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||| ||||
Sbjct 2390 TATCTGGTTGTTCAACCCTCAAGACTTTTCCAGTTCCCATTGAAAACATGAAATGTTTGC 2449
Query 2504 AGATATTATTGCTTGACGGGACAGCACTTAAAGAAATGCCAAAGTTATTGCGGTTCAATA 2563
|||| |||||||| |||||||||| | |||||||||| |||||| |||||| || |||||
Sbjct 2450 AGATTTTATTGCTGGACGGGACAGAAATTAAAGAAATCCCAAAGATATTGCAGTACAATA 2509
Query 2564 GCTCTAGAGTGGAAGATCTACCCGAATTAAGACGTGGTATTAATGGCCTATCCTCATTGC 2623
|||| | |||||||||||||| |||||||||||||||| | || ||||||||||||||||
Sbjct 2510 GCTCAAAAGTGGAAGATCTACGCGAATTAAGACGTGGTGTGAAAGGCCTATCCTCATTGC 2569
Query 2624 GACGTCTATGCTTAAGCAGGAACAATATGATCAGCAATCTGCAAATCGACATCAATCAAC 2683
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 2570 GACGTCTATGCTTAAGTAGGAATGGTATGATCAGCAATCTGCAAATCGACATCAGTCAGC 2629
Query 2684 TCTATCATCTGAAATGG-TTAGACCTGAAATACTGCAAGAATCTCACATCAATTCCATTG 2742
| ||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||
Sbjct 2630 TATATCATCTGAAATGGCTT-GACCTGAAGTACTGCAAGAATCTCACATCAATTTCATTG 2688
Query 2743 CTTCCACCAAATCTAGAGATCTTAGATGCACATGGCTGCGAAAAACTGAAAACAGTTGCG 2802
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2689 CTTCCACCAAATCTAGAGATTTTAGATGCACATGGCTGCGAGAAACTGAAAACAGTTGCC 2748
Query 2803 TCGCCCATGGCCCTTCTTAAGCTTATGGAGCAGGTTCAGTCTAAATTCATTTTCACCAAC 2862
|| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2749 TCCCCCATGGCCCTTCCCAAGCTTATGGAGCAGGTTCGGTCTAAATTCATTTTCACCAAC 2808
Query 2863 TGCAACAATCTGGAACAAGTTGCAAAGAATAGCATCACATCGTATGCTCAAAGGAAAAGC 2922
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 2809 TGCAACAAACTGGAACAAGTTGCAAAGAATAGCATCACATTGTATGCTCAAAGGAAATGT 2868
Query 2923 CAGCTAGATGCACGTAGATGCTACAAAGAGGGGGGTGTTTCAGAAGCTTTGTTCATCGCT 2982
||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||
Sbjct 2869 CAGCTAGATGCACTTAGATGCTATAAAGAGGGAACTGTTTCAGAAGCTTTGCTCATCACT 2928
Query 2983 TGCTTTCCAGGAAGTGATGTACCTTCATGGTTCAACTATCAAACATTTGGATCCGCATTA 3042
|| |||||||||||||| |||||||||||||||||| |||||||||| |||||| | ||
Sbjct 2929 TGTTTTCCAGGAAGTGAAGTACCTTCATGGTTCAACCATCAAACATTCGGATCCAAACTA 2988
Query 3043 AGGCTGAAGTTGCCGCCACATTGGTGTGACAACAGGCTTTCAACAATAGCTCTATGTGCT 3102
| ||| ||||| ||||||||||||||||||||| ||||||||||| ||| | |||| |||
Sbjct 2989 AAGCTTAAGTTCCCGCCACATTGGTGTGACAACGGGCTTTCAACATTAGTTTTATGCGCT 3048
Query 3103 GTTGTCACATTCCCTGACACTCAAGATGAAATCAACCGTTTCTCAATAGAGTGCACTTGT 3162
||||||| |||||| | | |||||||||||||||||||||||||| |||||||||
Sbjct 3049 GTTGTCAAATTCCC---C-CGG--GATGAAATCAACCGTTTCTCAATAGATTGCACTTGT 3102
Query 3163 GAGTTCAAAAATGAACTTGGGACATGTATACGTTTCAGTTGCACTCTTGGTGGAAGTTGG 3222
||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 3103 GAGTTCAAAAACGAGGTTGAGACATGTATACGTTTCAGTTGCACTCTTGGTGGAGGTTGG 3162
Query 3223 ATCGAGTCTCGCAAGATTGATTCAGATCATGTGTTTATCGGTTACACTAGTAGCTCACAC 3282
||||| || || ||||||||||| || ||||||||||| |||||||| ||| |||||||
Sbjct 3163 ATCGAATCACGGAAGATTGATTCGGACCATGTGTTTATAGGTTACACCAGTTCCTCACAC 3222
Query 3283 ATAACAAAACATCTAGAAGGGTCGTTGAAGTTGAAAGAACATGATAAATGTGTTCCTACG 3342
||||||||||||||||||||||| ||||||| | |||||||| |||||| |||||||||
Sbjct 3223 ATAACAAAACATCTAGAAGGGTCATTGAAGTCGCAAGAACATCATAAATATGTTCCTACT 3282
Query 3343 GAGGCTTCAATCGAATTTGAAGTGATAGATGGAGCAGGTGAAATTGTGAATTGTGGTTTA 3402
||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||
Sbjct 3283 GAGGCTTCAATCGAATTTGCAGTGAGAGATGGACCAGGTGAGATTGTGAATTGTGGTTTA 3342
Query 3403 AGTTTGGTGTACGAGGAACCAAACCATGTCGTTGTTGAAAGGAACTGTAAAGGAGCTTCA 3462
||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||
Sbjct 3343 AGTTTGGTGTACGAGGAACCAAACCATGTCGTTGTTGAAGGGAATTGTAATGGAACTTCT 3402
Query 3463 TCAAGAAGAGATATGTCCGTTGGAGAGAGCATATTGAGCATTGCTGCTGGGTATTTGTCC 3522
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3403 TCAAGAAGAGAGGTGTCCGTTGGAGAGAGCATATTGAGCTTTGCTGCTGGGTATTTGTCC 3462
Query 3523 AATGTTTTGAGGTTTCTGTGGCTAGGTGTTGTATTCTTTATGGTTTATGGATTTTCTAAA 3582
| |||||| |||||| |||||||||||||||| ||||||||||||||||| ||| ||| |
Sbjct 3463 ACTGTTTTAAGGTTTATGTGGCTAGGTGTTGTTTTCTTTATGGTTTATGGGTTTGCTAGA 3522
Query 3583 ATTTTTGTTAAATAA 3597
||||||||| ||||
Sbjct 3523 TTTTTTGTTAGATAA 3537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135865535610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5