BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36160.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1 2165 0.0 Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772 702 0.0 > Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1 Length=1420 Score = 2165 bits (1172), Expect = 0.0 Identities = 1351/1435 (94%), Gaps = 22/1435 (2%) Strand=Plus/Plus Query 4 TCTCTTCACATTCACCGAAACTTATAACCAAGATCAATATCAGttctctc--tc-tcgat 60 |||||||| |||| |||||||||||||||||| ||||||||||||||||| || ||||| Sbjct 1 TCTCTTCATATTCCCCGAAACTTATAACCAAGTTCAATATCAGTTCTCTCTGTCGTCGAT 60 Query 61 gaacatcatcttctacacagccatctttctttgacttcttcttcttcttcttAATATAAC 120 || |||||||||||||||| |||||| ||||||| |||||||||| | ||| ||| | Sbjct 61 GATCATCATCTTCTACACATCCATCTCTCTTTGA---CTTCTTCTTC-T-TTACTAT--C 113 Query 121 GGCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTGTCCTATACACATATCTATAATTCC 180 ||||||||||||||||||||||||||||||||| | ||||||||| || ||| ||| Sbjct 114 -CCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTATTCTATACACAAATATAT-CTTCT 171 Query 181 ACAGGTTGAAGAAAAGAAATAATGGAATCGGTGGATCAATCATGTAGTGTTCCTCCGGGA 240 |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 172 ACAGGTTGAAGAAAAGCAATTATGGAATCAGTGGATCAATCATGTAGTGTTCCTCCGGGA 231 Query 241 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 291 Query 301 TCGCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 360 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TCCCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 351 Query 361 GATTTACAAGAGAGCTGCCGAATCGGATATGAGGAAAGAAATGAATGGTATTTCTTCAGC 420 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 352 GATTTACAAGAGAGATGCCGAATCGGATACGAGGAAAGAAATGAATGGTATTTCTTCAGC 411 Query 421 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 471 Query 481 TGGAAAGCCACGGGCCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 540 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TGGAAAGCCACGGGTCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 531 Query 541 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 591 Query 601 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 651 Query 661 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACAGAAACTTGGAGC 720 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 652 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACGGAAACTTGGAGC 711 Query 721 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTACGCTCAGTTACGGAGCCTCTTAAC 780 |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | Sbjct 712 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTAAGCTCGGTTGCGGAGCCTCTCAGT 771 Query 781 TACGTATCTAAGCAGAAACAAAACGTTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 840 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 772 TACGTATCTAAGCAGAAACAAAACATTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 831 Query 841 GAAGGATCAGATATCGGTTTAAACTTCATCCACTGCGATCAATTCATTCAACTTCCGCAG 900 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 832 GAAGGATCAGATATCGGTTTGAACTTTATCCACTGCGATCAATTCATTCAACTTCCGCAG 891 Query 901 CTTGAAAGCCCTTCACTCCCTCTTACCAAAAGACCAGTGAGCTTGACGTCAATTACATCA 960 |||||||||||||||||||||||||| || || ||||||| || |||||||||||||||| Sbjct 892 CTTGAAAGCCCTTCACTCCCTCTTACGAAGAGGCCAGTGAACTCGACGTCAATTACATCA 951 Query 961 TTGGAGAAGAATAAAAATATCTACAAAAGACATTTAATAGAAGAGGATGTGAGCTTCAAT 1020 |||||||||||| ||| || |||||||||||| ||||||||||| ||||||||||||||| Sbjct 952 TTGGAGAAGAATCAAACTAACTACAAAAGACAGTTAATAGAAGATGATGTGAGCTTCAAT 1011 Query 1021 GCGCTAATAAGTAGTGGAAATAAAGATAAGAAGAAGAAGAAAACATCAGTGATGACGACG 1080 ||| | |||||||||| |||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1012 GCGTTGATAAGTAGTGAAAATAAAGGTAACAAGAAGAAGAAAACATCAGTGATGACGACG 1071 Query 1081 GATTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1140 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 GACTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1131 Query 1141 TCGGGTTTTGGAGGTCATCATGAAGAAGATAACAATAAAATCGGTCATTACAATAACGAA 1200 || ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1132 TCAGGTTTCGGAGGTCATCAAGAAGAAGATAACAATAAAATCAGTCATTACAATAACGAA 1191 Query 1201 GAGAGCAATAACAAGGGATCAGTAGAGACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1260 |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1192 GAGAGCAATAACAACGGA---GTAGAAACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1248 Query 1261 GAAGAGAACAGATTCATCAGTGGATTATTGTGTTCCAACTTGGACTATGACTTATATAGG 1320 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1249 GAAGAGAACAGATTCATCAGTGGATTCTTGTGTTCCAACTTGGACTATGACTTATATAGT 1308 Query 1321 GATTTACATGTTTGATAAAAGATAACACTATAATATGGTGCGTAACG-T-TT-GCTATAT 1377 ||||| |||||||||||||||||||| ||||| |||||||||||| | || ||||||| Sbjct 1309 GATTTGCATGTTTGATAAAAGATAACGCTATAGTATGGTGCGTAAAAATGTTCGCTATAT 1368 Query 1378 AGGTACGTAGAATTTATTGATAC-AGTATAACATATATAAAGATGTGTGAAAGAT 1431 ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| Sbjct 1369 AGGTACGTAGAAT--ATTGATAAGAG-ATAACATATATAAAAATGTGTGAAAGAT 1420 > Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772 Length=1098 Score = 702 bits (380), Expect = 0.0 Identities = 783/970 (81%), Gaps = 58/970 (6%) Strand=Plus/Plus Query 218 AATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTT 277 |||| ||||| |||||||| |||||||| |||||||| || || |||||||| || |||| Sbjct 14 AATCTTGTAGCGTTCCTCCTGGATTCAGGTTCCATCCGACTGACGAAGAGCTTGTCGGTT 73 Query 278 ACTATTTAAGGAA-AAAAGTTGCATCGCAAAAGATCGATCTTGATGTCATAAGAGATATT 336 ||||| ||||||| |||| | |||||||||||||| |||||||||||||| ||||| ||| Sbjct 74 ACTATCTAAGGAAGAAAA-TCGCATCGCAAAAGATTGATCTTGATGTCATCAGAGACATT 132 Query 337 GATCTCTACAGAATCGAACCATGGGATTTACAAGAG-AGCTGCCGAATCGGATATGAGGA 395 ||||||||||||||||||||||||||| |||||||| | || |||||||||||||| || Sbjct 133 GATCTCTACAGAATCGAACCATGGGATCTACAAGAGCAA-TGTCGAATCGGATATGAAGA 191 Query 396 A-AGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAA 454 | ||||||||||||||| || || ||||| || || ||||||||||| || ||||||| Sbjct 192 GCA-AAATGAATGGTATTTTTTTAGTCACAAGGACAAAAAATATCCAACGGGGACAAGAA 250 Query 455 CAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGCCGAGACAAGGCTGTTTACG 514 | || ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| Sbjct 251 CTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACG 310 Query 515 ACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGT-TCTACAAAGGAAGAGCCCCT 573 |||| ||||||| ||||| ||||| ||||||||||||| | ||||||||| | || ||| Sbjct 311 ACAAAACAAAACTAATTGGAATGAGGAAAACACTTGTGTAT-TACAAAGGACGTGCTCCT 369 Query 574 AATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCA 633 |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 370 AATGGCCAAAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCA 429 Query 634 CCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAA-AGCCAATGACCGG 692 || || ||||||||||| ||||||||||||||||| |||||||||| ||| | ||||| Sbjct 430 CCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAGAAAAGAGC---T-ACCGG 485 Query 693 GCAAGCCAAGAACACAGAAACTTGGAGCTCAAGTTACTTTTACGACGAATTA-C--CGAG 749 ||||||||||||||| |||||||||| |||||||||||| || || ||| | | ||| Sbjct 486 GCAAGCCAAGAACACGGAAACTTGGACCTCAAGTTACTTCTATGATGAAGTCGCATCGAA 545 Query 750 TGGAGT-ACGCTCAGTT-ACGGAGCCTCTTAACTACGTATCTAAGCAGAAACA-AAACGT 806 ||| || | ||| ||| || || || || | ||| ||||||||||| |||| |||| | Sbjct 546 TGGCGTTAA-CTC-GTTTACAGACCCGATTGATTACATATCTAAGCAGCAACATAAAC-T 602 Query 807 TTTTGCACAAGATTTAATGT-TCAAGCAAGAACTAGAAGGA-TCAGAT-ATCGGTTTAAA 863 ||||| | ||| ||| |||| | |||||||||||||||||| | | | | |||| |||| Sbjct 603 TTTTGGAAAAGGTTTGATGTGT-AAGCAAGAACTAGAAGGAATG-GTTGA-CGGTCTAAA 659 Query 864 CT-TCATCCACTGCGA-TCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCCT 921 || | || || | | | |||||||||||| || ||||| || |||| ||||| ||||| Sbjct 660 CTAT-ATGCAAT-CAAATCAATTCATTCAGCTCCCGCAACTCCAAAGTCCTTCTCTCCCG 717 Query 922 CTTACCAAAAGACCAGT-GAGCTTGACGTCAATTACATCATTGGAGAAGAATAAAAATAT 980 || | ||||| || | ||||| || ||| || |||||| |||| || || || Sbjct 718 CTGATGAAAAGGCCT-TCGAGCTCGATGTCCATAACATCAATGGACAACCATTGTAA--- 773 Query 981 CTACAAAAGAC-ATTTAATAGAAGAGGATGTGAGCTTCAA-TGCGCTAATAAGTAGTG-G 1037 |||||||| | || | || || || | |||||| | | | ||||||| | | | Sbjct 774 CTACAAAACCCCATC-AG-AG--GATGAAGAAAGCTTCGAGT-CATTAATAAGCCGAGAG 828 Query 1038 AAATAAA-GATAAGAAGAAGAAGAAAACATCAGTGATGACGACG-GATTGGAGAGCACTC 1095 || |||| || |||||||| ||| || | | |||||||| | |||||||||| | | Sbjct 829 AA-TAAAAGA-AAGAAGAAAAAGCAAGTA--A-TGATGACGG-GAGATTGGAGAG-AGTT 881 Query 1096 -GATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGAT---GGAGTTTCGGGTTTTGG 1151 ||||| ||||||||||| ||||||||||||||||||||| ||| ||| ||||| | Sbjct 882 AGATAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGATAATGGAACTTCAGGTTTCGC 941 Query 1152 AGGTCATCAT 1161 ||||||||| Sbjct 942 TGGTCATCAT 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5