BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36160.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1 2165 0.0
Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772 702 0.0
> Ahg491017 jgi|Araly1|491017|fgenesh2_kg.7__450__AT4G36160.1
Length=1420
Score = 2165 bits (1172), Expect = 0.0
Identities = 1351/1435 (94%), Gaps = 22/1435 (2%)
Strand=Plus/Plus
Query 4 TCTCTTCACATTCACCGAAACTTATAACCAAGATCAATATCAGttctctc--tc-tcgat 60
|||||||| |||| |||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1 TCTCTTCATATTCCCCGAAACTTATAACCAAGTTCAATATCAGTTCTCTCTGTCGTCGAT 60
Query 61 gaacatcatcttctacacagccatctttctttgacttcttcttcttcttcttAATATAAC 120
|| |||||||||||||||| |||||| ||||||| |||||||||| | ||| ||| |
Sbjct 61 GATCATCATCTTCTACACATCCATCTCTCTTTGA---CTTCTTCTTC-T-TTACTAT--C 113
Query 121 GGCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTGTCCTATACACATATCTATAATTCC 180
||||||||||||||||||||||||||||||||| | ||||||||| || ||| |||
Sbjct 114 -CCTCGTTTCTTTTGTTTCCAAACGAGTAAATAGTATTCTATACACAAATATAT-CTTCT 171
Query 181 ACAGGTTGAAGAAAAGAAATAATGGAATCGGTGGATCAATCATGTAGTGTTCCTCCGGGA 240
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 172 ACAGGTTGAAGAAAAGCAATTATGGAATCAGTGGATCAATCATGTAGTGTTCCTCCGGGA 231
Query 241 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTTACTATTTAAGGAAAAAAGTTGCA 291
Query 301 TCGCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCCCAAAAGATCGATCTTGATGTCATAAGAGATATTGATCTCTACAGAATCGAACCATGG 351
Query 361 GATTTACAAGAGAGCTGCCGAATCGGATATGAGGAAAGAAATGAATGGTATTTCTTCAGC 420
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 352 GATTTACAAGAGAGATGCCGAATCGGATACGAGGAAAGAAATGAATGGTATTTCTTCAGC 411
Query 421 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CACAAAGATAAGAAATATCCAACAGGAACAAGAACAAACAGAGCGACCATGGCTGGGTTT 471
Query 481 TGGAAAGCCACGGGCCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGGAAAGCCACGGGTCGAGACAAGGCTGTTTACGACAAGTCAAAACTGATTGGTATGAGA 531
Query 541 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAAACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATG 591
Query 601 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGGAAGAAGGGTGGGTGGTT 651
Query 661 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACAGAAACTTGGAGC 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 652 TGTAGAGCGTTCAAGAAAAAGCCAATGACCGGGCAAGCCAAGAACACGGAAACTTGGAGC 711
Query 721 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTACGCTCAGTTACGGAGCCTCTTAAC 780
|||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |
Sbjct 712 TCAAGTTACTTTTACGACGAATTACCGAGTGGAGTAAGCTCGGTTGCGGAGCCTCTCAGT 771
Query 781 TACGTATCTAAGCAGAAACAAAACGTTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 772 TACGTATCTAAGCAGAAACAAAACATTTTTGCACAAGATTTAATGTTCAAGCAAGAACTA 831
Query 841 GAAGGATCAGATATCGGTTTAAACTTCATCCACTGCGATCAATTCATTCAACTTCCGCAG 900
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 832 GAAGGATCAGATATCGGTTTGAACTTTATCCACTGCGATCAATTCATTCAACTTCCGCAG 891
Query 901 CTTGAAAGCCCTTCACTCCCTCTTACCAAAAGACCAGTGAGCTTGACGTCAATTACATCA 960
|||||||||||||||||||||||||| || || ||||||| || ||||||||||||||||
Sbjct 892 CTTGAAAGCCCTTCACTCCCTCTTACGAAGAGGCCAGTGAACTCGACGTCAATTACATCA 951
Query 961 TTGGAGAAGAATAAAAATATCTACAAAAGACATTTAATAGAAGAGGATGTGAGCTTCAAT 1020
|||||||||||| ||| || |||||||||||| ||||||||||| |||||||||||||||
Sbjct 952 TTGGAGAAGAATCAAACTAACTACAAAAGACAGTTAATAGAAGATGATGTGAGCTTCAAT 1011
Query 1021 GCGCTAATAAGTAGTGGAAATAAAGATAAGAAGAAGAAGAAAACATCAGTGATGACGACG 1080
||| | |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1012 GCGTTGATAAGTAGTGAAAATAAAGGTAACAAGAAGAAGAAAACATCAGTGATGACGACG 1071
Query 1081 GATTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GACTGGAGAGCACTCGATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGATGGAGTT 1131
Query 1141 TCGGGTTTTGGAGGTCATCATGAAGAAGATAACAATAAAATCGGTCATTACAATAACGAA 1200
|| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 TCAGGTTTCGGAGGTCATCAAGAAGAAGATAACAATAAAATCAGTCATTACAATAACGAA 1191
Query 1201 GAGAGCAATAACAAGGGATCAGTAGAGACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1260
|||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1192 GAGAGCAATAACAACGGA---GTAGAAACTGCTTCTTCCACGTTATTGAGTGATAGAGAA 1248
Query 1261 GAAGAGAACAGATTCATCAGTGGATTATTGTGTTCCAACTTGGACTATGACTTATATAGG 1320
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1249 GAAGAGAACAGATTCATCAGTGGATTCTTGTGTTCCAACTTGGACTATGACTTATATAGT 1308
Query 1321 GATTTACATGTTTGATAAAAGATAACACTATAATATGGTGCGTAACG-T-TT-GCTATAT 1377
||||| |||||||||||||||||||| ||||| |||||||||||| | || |||||||
Sbjct 1309 GATTTGCATGTTTGATAAAAGATAACGCTATAGTATGGTGCGTAAAAATGTTCGCTATAT 1368
Query 1378 AGGTACGTAGAATTTATTGATAC-AGTATAACATATATAAAGATGTGTGAAAGAT 1431
||||||||||||| ||||||| || |||||||||||||| |||||||||||||
Sbjct 1369 AGGTACGTAGAAT--ATTGATAAGAG-ATAACATATATAAAAATGTGTGAAAGAT 1420
> Ahg906644 jgi|Araly1|906644|Al_scaffold_0003_3772
Length=1098
Score = 702 bits (380), Expect = 0.0
Identities = 783/970 (81%), Gaps = 58/970 (6%)
Strand=Plus/Plus
Query 218 AATCATGTAGTGTTCCTCCGGGATTCAGATTCCATCCAACAGATGAAGAGCTCGTTGGTT 277
|||| ||||| |||||||| |||||||| |||||||| || || |||||||| || ||||
Sbjct 14 AATCTTGTAGCGTTCCTCCTGGATTCAGGTTCCATCCGACTGACGAAGAGCTTGTCGGTT 73
Query 278 ACTATTTAAGGAA-AAAAGTTGCATCGCAAAAGATCGATCTTGATGTCATAAGAGATATT 336
||||| ||||||| |||| | |||||||||||||| |||||||||||||| ||||| |||
Sbjct 74 ACTATCTAAGGAAGAAAA-TCGCATCGCAAAAGATTGATCTTGATGTCATCAGAGACATT 132
Query 337 GATCTCTACAGAATCGAACCATGGGATTTACAAGAG-AGCTGCCGAATCGGATATGAGGA 395
||||||||||||||||||||||||||| |||||||| | || |||||||||||||| ||
Sbjct 133 GATCTCTACAGAATCGAACCATGGGATCTACAAGAGCAA-TGTCGAATCGGATATGAAGA 191
Query 396 A-AGAAATGAATGGTATTTCTTCAGCCACAAAGATAAGAAATATCCAACAGGAACAAGAA 454
| ||||||||||||||| || || ||||| || || ||||||||||| || |||||||
Sbjct 192 GCA-AAATGAATGGTATTTTTTTAGTCACAAGGACAAAAAATATCCAACGGGGACAAGAA 250
Query 455 CAAACAGAGCGACCATGGCTGGGTTTTGGAAAGCCACGGGCCGAGACAAGGCTGTTTACG 514
| || ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 251 CTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACG 310
Query 515 ACAAGTCAAAACTGATTGGTATGAGAAAAACACTTGTGT-TCTACAAAGGAAGAGCCCCT 573
|||| ||||||| ||||| ||||| ||||||||||||| | ||||||||| | || |||
Sbjct 311 ACAAAACAAAACTAATTGGAATGAGGAAAACACTTGTGTAT-TACAAAGGACGTGCTCCT 369
Query 574 AATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCA 633
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 370 AATGGCCAAAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCA 429
Query 634 CCTCCTCAGGAAGAAGGGTGGGTGGTTTGTAGAGCGTTCAAGAAAA-AGCCAATGACCGG 692
|| || ||||||||||| ||||||||||||||||| |||||||||| ||| | |||||
Sbjct 430 CCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAGAAAAGAGC---T-ACCGG 485
Query 693 GCAAGCCAAGAACACAGAAACTTGGAGCTCAAGTTACTTTTACGACGAATTA-C--CGAG 749
||||||||||||||| |||||||||| |||||||||||| || || ||| | | |||
Sbjct 486 GCAAGCCAAGAACACGGAAACTTGGACCTCAAGTTACTTCTATGATGAAGTCGCATCGAA 545
Query 750 TGGAGT-ACGCTCAGTT-ACGGAGCCTCTTAACTACGTATCTAAGCAGAAACA-AAACGT 806
||| || | ||| ||| || || || || | ||| ||||||||||| |||| |||| |
Sbjct 546 TGGCGTTAA-CTC-GTTTACAGACCCGATTGATTACATATCTAAGCAGCAACATAAAC-T 602
Query 807 TTTTGCACAAGATTTAATGT-TCAAGCAAGAACTAGAAGGA-TCAGAT-ATCGGTTTAAA 863
||||| | ||| ||| |||| | |||||||||||||||||| | | | | |||| ||||
Sbjct 603 TTTTGGAAAAGGTTTGATGTGT-AAGCAAGAACTAGAAGGAATG-GTTGA-CGGTCTAAA 659
Query 864 CT-TCATCCACTGCGA-TCAATTCATTCAACTTCCGCAGCTTGAAAGCCCTTCACTCCCT 921
|| | || || | | | |||||||||||| || ||||| || |||| ||||| |||||
Sbjct 660 CTAT-ATGCAAT-CAAATCAATTCATTCAGCTCCCGCAACTCCAAAGTCCTTCTCTCCCG 717
Query 922 CTTACCAAAAGACCAGT-GAGCTTGACGTCAATTACATCATTGGAGAAGAATAAAAATAT 980
|| | ||||| || | ||||| || ||| || |||||| |||| || || ||
Sbjct 718 CTGATGAAAAGGCCT-TCGAGCTCGATGTCCATAACATCAATGGACAACCATTGTAA--- 773
Query 981 CTACAAAAGAC-ATTTAATAGAAGAGGATGTGAGCTTCAA-TGCGCTAATAAGTAGTG-G 1037
|||||||| | || | || || || | |||||| | | | ||||||| | | |
Sbjct 774 CTACAAAACCCCATC-AG-AG--GATGAAGAAAGCTTCGAGT-CATTAATAAGCCGAGAG 828
Query 1038 AAATAAA-GATAAGAAGAAGAAGAAAACATCAGTGATGACGACG-GATTGGAGAGCACTC 1095
|| |||| || |||||||| ||| || | | |||||||| | |||||||||| | |
Sbjct 829 AA-TAAAAGA-AAGAAGAAAAAGCAAGTA--A-TGATGACGG-GAGATTGGAGAG-AGTT 881
Query 1096 -GATAAATTTGTTGCTTCTCAACTTATGAGCCAAGAAGAT---GGAGTTTCGGGTTTTGG 1151
||||| ||||||||||| ||||||||||||||||||||| ||| ||| ||||| |
Sbjct 882 AGATAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGATAATGGAACTTCAGGTTTCGC 941
Query 1152 AGGTCATCAT 1161
|||||||||
Sbjct 942 TGGTCATCAT 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5