BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36210.3
Length=2481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944253 jgi|Araly1|944253|scaffold_700482.1 2708 0.0
Ahg480715 jgi|Araly1|480715|fgenesh2_kg.3__3416__AT2G18100.1 1382 0.0
Ahg328137 jgi|Araly1|328137|fgenesh1_pm.C_scaffold_7000364 514 1e-144
> Ahg944253 jgi|Araly1|944253|scaffold_700482.1
Length=1693
Score = 2708 bits (1466), Expect = 0.0
Identities = 1621/1696 (96%), Gaps = 10/1696 (1%)
Strand=Plus/Plus
Query 455 CGAATGATGCTTCTGCCGAGATGGTGGAGCAAGAGATGGCCTTAGCTAAAGCTGCTGATG 514
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGTGATGCTTCTGTCGAGATGGTGGAGCAAGAGATGGCCTTAGCTAAAGCTGCTGATG 60
Query 515 CTATGGTGCATAGCATTCAATGCTCTGTATCTATAGATGCTAAGAAGGAGAAGCATCAAG 574
||||||||||||| || ||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 61 CTATGGTGCATAGTATCCAAAGCTCTGTATCTAGAGATGCTAAGAAGGAGAAGCATCAGG 120
Query 575 AATACGAAAACGAATGCCGTGAGAAATATGCTGTTCCTGAGGTAAAATCAAAAGATGTTG 634
|||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 121 AATATGAAAATGAATGCCGTGAGAAATATGCGGTTCCTGAGGTAAAATCAAAAGATGTGG 180
Query 635 ATTTGGATAAAGAGAAGGATAAGAAGGAAGCGGCTGAAAGTGCTGCAAGAGA-AG-GTCT 692
|||||||||||||||||||||||||||| |||||||| | ||||| ||| | || ||||
Sbjct 181 ATTTGGATAAAGAGAAGGATAAGAAGGAGGCGGCTGATATTGCTG--AGACAGAGAGTCT 238
Query 693 TGAAGCGGGTGTGGTTATTATAGATGGAAGCCACAAGCCTGAAGTTCTTGAAAATGAGAA 752
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAAGCTGGTGTAGTTATTATAGATGGAAGCCACAAGCCTGAAGTTCTTGAAAATGAGAA 298
Query 753 GTCTGTTGAGGAAGTAACATTGCTTAGTCATCAGAGGAAGATAAATGTTCTTTATGAGCT 812
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 299 ATCTGTTGAGGAAGTAACATTGCTTAGCCATCAGAGGAAGATAAATGTTCTTTATGAGCT 358
Query 813 ACTTTCTGCTTGCTTGTCAGATAAACATCACGAGGATAAGAAATGTAAACGGTGTAGAAA 872
||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||
Sbjct 359 ACTTTCTGCTTGCTTGTCAGACAAACATCAAGAGGATAATAAATGTAAACGGCGTAGAAA 418
Query 873 AGGCTATGATGCGCGTCACCGTGTTGCTCTCCGTTTACTTGCGACCTGGTTTAACATTGA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGCTATGATGCGCGTCACCGTGTTGCTCTCCGTTTACTTGCGACCTGGTTTAACATTGA 478
Query 933 GTGGATTAAAGTGGAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCCATTCAGAA 992
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 GTGGATTAAAGTGGAAGCAATTGAGACAATGGTCGCATGCTCTGCCATGGCTATTCAGAA 538
Query 993 GTCTGCTGAAATGAAGGGTGAAGATAATCTAACTCCTACGACTTCATGGGCTAAGTGGAA 1052
||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||||
Sbjct 539 GTCTGCTGAAATGAAGGGTGAAGATGCTCTGTCTACTACAACTTCATGGGCTAAGTGGAA 598
Query 1053 GCGAGGAGGCATCATTGGTGCCGCTGCTATTACAGGAGGCACTTTGATGGCCATAACTGG 1112
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 599 GCGTGGAGGCATCATTGGTGCCGCTGCTATTACAGGGGGCACTTTGATGGCCATCACTGG 658
Query 1113 TGGATTGGCTGCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCAC 1172
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 659 TGGATTGGCTGCTCCAGCTATTGCTGCAGGGTTTGGTGCATTGGCACCAACACTGGGCAC 718
Query 1173 AATTATTCCGGTGATTGGAGCTGG-GGGTTTTGCTGCTGCGGCTAGTGCCGCAGGAACTG 1231
| |||| ||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||
Sbjct 719 ACTTATACCGGTGATTGGAGCTGGTGGG-TTTGCTGCTGCAGCTAGTGCCGCTGGAACTG 777
Query 1232 TTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGGAGCTGCTGGAGCTGGTCTCACAGGGA 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGCTGGCTCCGTTGCGGTTGCAGCATCGTTTGGAGCTGCTGGAGCTGGTCTCACAGGGA 837
Query 1292 CTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAA 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTAAGATGGCAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAA 897
Query 1352 ATCATAATCAAGGACGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAG 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATCATAATCAAGGACGGTTAGCAGTGGAAGTCTTGGTTGCTGGTGTTGTTTTTGAAGAAG 957
Query 1412 AAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAGGTACACGCTGCAAT 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGATTTTGTGAAACCATGGGAAGGGTTAACTAGTAATCTGGAGAGGTACACGCTGCAAT 1017
Query 1472 GGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAGAC 1531
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 GGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCAATTCAGGATTGGCTTACTTCAAGAC 1077
Query 1532 TTGCAATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGG 1591
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGCCATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGG 1137
Query 1592 CATTGGCATGGCCAGCGACAATCTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAGTA 1651
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1138 CATTAGCATGGCCAGCGACTATCTTAGTAGCCGCTGATTTCATAGATAGCAAATGGAGTA 1197
Query 1652 TTGCTATTGACAGGTCGGATAAAGCAGGAAGACTTCTAGCTGAAGTGCTACAAAAAGGCT 1711
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1198 TTGCTATTGATAGGTCGGACAAAGCAGGAAGACTTCTAGCTGAAGTACTACAAAAAGGCT 1257
Query 1712 TGCAAGGAAATAGACCCATCACTCTAGTTGGTTTTTCGCTTGGTGCTCGTGTCATCTTCA 1771
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1258 TGCAAGGAAATAGACCCATCACTCTCGTAGGTTTTTCACTTGGTGCTCGTGTCATCTTCA 1317
Query 1772 AATGCCTCCAAGCTCTGGCTGAGACAGAACAAAACGCTGAACTTGTGGAGAGAGTTGTTC 1831
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1318 AATGCCTCCAAGCTCTGGCCGAGACAGAACAAAACGCTGAACTTGTGGAAAGAGTTGTTC 1377
Query 1832 TTCTTGGAGCACCCATTTCAATCAATAGTGAAAACTGGCGAGACGTAAGGAAGATGGTCG 1891
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1378 TTCTTGGAGCACCCATTTCAATCAATAATGAAAACTGGCGAGACGTAAGGAAGATGGTAG 1437
Query 1892 CTGGAAGATTCATCAATGTTTATGCCACAAATGATTGGACCCTTGGTATCGCATTTCGTG 1951
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 CTGGAAGATTCATCAATGTTTATGCCACAAATGATTGGACCCTTGGTATCGCATTTCGGG 1497
Query 1952 CTAGTTTAATT-TCCCAAGGATTAGCCGGAATCCAACCAATATGTATCCCTGGTATCGAA 2010
|||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1498 CTAGTTTA-TTCTCCCAAGGATTAGCGGGAATCCAACCAATTTGTATCCCTGGGATCGAA 1556
Query 2011 AACGTGGATGTAACCGATATGGTGGAAGGTCACTCTTCATATCTATGGAAAACTCAGCAG 2070
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AATGTGGATGTAACCGATATGGTGGAAGGTCACTCTTCATATCTATGGAAAACTCAGCAG 1616
Query 2071 ATTTTAGAAAGACTCGAGATCGACACATATTACCCTGTTTTTCGAGACACTCTTTAAC-C 2129
||| |||| |||||||| |||||||| ||||||||||||||| |||||||||| |||| |
Sbjct 1617 ATTCTAGACAGACTCGAAATCGACACTTATTACCCTGTTTTTAGAGACACTCTCTAACGC 1676
Query 2130 AAAATCAAATTAGATA 2145
||| ||||||||||||
Sbjct 1677 AAA-TCAAATTAGATA 1691
> Ahg480715 jgi|Araly1|480715|fgenesh2_kg.3__3416__AT2G18100.1
Length=2307
Score = 1382 bits (748), Expect = 0.0
Identities = 1220/1445 (84%), Gaps = 44/1445 (3%)
Strand=Plus/Plus
Query 710 TTATAGATGGAAGCCACAAGCCT-GAAGTTCTTGAAAATGAGAAGTCTGTTGAGGAAGTA 768
||| ||||||| | || || ||| | | || ||||| ||||||| |||||| |||||||
Sbjct 639 TTAAAGATGGAGGTCATAATCCTGGGA-TTGTTGAACATGAGAAACCTGTTGGGGAAGTA 697
Query 769 ACATTGCTTAGTCATCAGAGGAAGATAAATGTTCTTTATGAGCTACTTTCTGCTTGCTTG 828
|||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 698 GCATTGCTTAGCCATGAGAGGAAGATAAATGTTCTTTACGAGCTACTTTCTGCTTGCTTG 757
Query 829 TCAGATAAACATCACGAGGATAAGAAATGTAAACGGTGTAGAAAAGGCTATGATGCGCGT 888
||||||||||| | || | ||||||||| |||| |||| ||||||||||||||||||
Sbjct 758 GCAGATAAACATGAGGAAAACGAGAAATGTACACGGCGTAGGAAAGGCTATGATGCGCGT 817
Query 889 CACCGTGTTGCTCTCCGTTTACTTGCGACCTGGTTTAACATTGAGTGGATTAAAGTGGAA 948
|||| ||||||||| || |||||||| || |||||| || || ||||||||||| |||||
Sbjct 818 CACCATGTTGCTCTGCGGTTACTTGCTACGTGGTTTGACTTTCAGTGGATTAAAATGGAA 877
Query 949 GCAATTGAGACAATGGTC-GCATGCTCTGCCATGGCCATT-CAGAAGTC-TGCT-GAAAT 1004
||| |||| || || ||| |||||||||||||||| |||| || ||||| | | || ||
Sbjct 878 GCAGTTGAAACGAT-GTCTGCATGCTCTGCCATGG-CATTGCAAAAGTCAAG-TGGATAT 934
Query 1005 GAAGGGTGAAGA-TAATCTAACTCCTACGACTTCATGGGCTAAGTGGAAGCGAGGAGGCA 1063
|||| ||||| | ||| | || || | | ||||||||| |||||||| |||||||
Sbjct 935 -AAGGAAGAAGAGT-CTCTGTCACCAACTAGTGAATGGGCTAAATGGAAGCGTGGAGGCA 992
Query 1064 TCATTGGTGCCGCTGCTATT-ACAGGAGGCACTTTGATGGCCATAACTGGTGGATTGGCT 1122
|| |||| || |||||| || ||||| ||||||||||||||||| ||||| |||||||||
Sbjct 993 TCGTTGGAGCGGCTGCT-TTAACAGGGGGCACTTTGATGGCCATCACTGGGGGATTGGCT 1051
Query 1123 GCTCCAGCTATAGCTGCAGGATTTGGTGCATTGGCACCAACACTGGGCACAATTATTCCG 1182
|||||||| || |||||||| || |||||||||||||||||||| ||||| || |||||
Sbjct 1052 GCTCCAGCAATCGCTGCAGGGTTCGGTGCATTGGCACCAACACTAGGCACGATGGTTCCG 1111
Query 1183 GTGATTGGAG-CTGGGGGTTTTGCTGCTGCGGCT-AGTGCCGCAGGAACTGTTGCTGGCT 1240
|| ||||||| | | ||| |||||||| || ||| || || || |||||||||||||| |
Sbjct 1112 GTAATTGGAGCCAGTGGG-TTTGCTGCAGCTGCTGAG-GCTGCGGGAACTGTTGCTGGTT 1169
Query 1241 CCGTTGCGGTTGCAGCATCGTTTGGAGCTGCTGGAGCTGGTCTCACAGGGACTAAGATGG 1300
| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1170 CTGTTGCTGTTGCAGCATCTTTTGGAGCTGCTGGAGCTGGGCTCACAGGGACTAAGATGG 1229
Query 1301 CAAGGAGAATTGGGGACCTTGATGAGTTCGAATTTAAAGCTATTGGCGAAAATCATAATC 1360
| ||||||| ||||||| |||| ||||| ||||||||||| ||||| |||||||| ||||
Sbjct 1230 CTAGGAGAACTGGGGACATTGAGGAGTTTGAATTTAAAGCCATTGGAGAAAATCACAATC 1289
Query 1361 AAGGACGGTTAGCAGTGGAAG-TCTTGGTTGCTGG-TGTTGTTTTTGAA-GAAGAAGATT 1417
||||||| ||||| |||| || |||| |||||||| | ||| |||| || |||||||| |
Sbjct 1290 AAGGACGATTAGCGGTGG-AGATCTTAGTTGCTGGCT-TTG-TTTTAAAGGAAGAAGACT 1346
Query 1418 TTGTGAAACCATGGGAAGGGTTAACTAGTAATC-TGGAGAGGTACACGCTGCAATGGGAG 1476
|||| ||||| ||||| ||||||||||| || | |||| ||||| ||| |||| |||||
Sbjct 1347 TTGTAAAACCCTGGGAGGGGTTAACTAGCAA-CTTGGAAAGGTATACGGTGCATTGGGAA 1405
Query 1477 TCCAAGAATCTTATCT-TAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAGACTTGC 1535
||||||||| |||| | ||||||||| || |||||||||||||||||||||||| ||||
Sbjct 1406 TCCAAGAATATTAT-TGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAGAGTTGC 1464
Query 1536 AATGGAATTGATGAAACAGGGAGCAATGCACACTGTGTTGGCCTCTCTTTTAATGGCATT 1595
||||| ||||||| ||| || ||||||||||| || | ||| |||||| ||| |
Sbjct 1465 TATGGAGTTGATGAGACAAGGTGCAATGCACACCGTACTAAACTCGCTTTTAGCAGCAAT 1524
Query 1596 GGCATGGCCAGCGACAAT-CTTAGTAGCTGCTGATTTCATAGATAGCAAATGGAGTATTG 1654
||||||||| || ||||| ||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 1525 GGCATGGCCGGCTACAATCCTT-GTAGCTGCTGATTTCATAGATAGTAAATGGAGTATCG 1583
Query 1655 CTATTGACAGGTCGGATAAAGCAGGAAGACTTCTAGCTGAAGTGCTACAAAAAGGCTTGC 1714
||||||||||||| || |||||||||| |||||| ||||||| ||| | |||||| ||||
Sbjct 1584 CTATTGACAGGTCAGACAAAGCAGGAAAACTTCTTGCTGAAGCGCTTCGAAAAGGGTTGC 1643
Query 1715 AAGGAAATAGACCCATCACTCTAGTTGGTTTTTCGCTTGGTGCTCGTGTCATCTTCAAAT 1774
||||||||||||| | ||||| |||||||||||||||||||| |||||| |||| || |
Sbjct 1644 AAGGAAATAGACCTGTGACTCTCGTTGGTTTTTCGCTTGGTGCGCGTGTCGTCTTTAAGT 1703
Query 1775 GCCTCCAAG-CTCTGGCT-GAGACAGAACAA-AACGCTGAACTTGTGGAGAGAGTTGTTC 1831
|||||| || |||||| | ||||| ||| || || |||||| ||||||| ||||||||||
Sbjct 1704 GCCTCC-AGACTCTGG-TCGAGACTGAA-AAGAATGCTGAAATTGTGGAAAGAGTTGTTC 1760
Query 1832 TTCTTGGAGCACCCATTTCAATCAATAGTGAAAACTGGCGAGACGTAAGGAAGATGGTCG 1891
||||||||||||| ||||||||||| | ||| || |||||||||||||| |||||||| |
Sbjct 1761 TTCTTGGAGCACCAATTTCAATCAAGAATGAGAATTGGCGAGACGTAAGAAAGATGGTGG 1820
Query 1892 CTGGAAGATTCATCAATGTTTATGCCACAAATGATTGGACCCTTGGTA-TCGCATTTCGT 1950
||||||||||||| |||||||| ||||||||||||||||||||||| | | |||||||||
Sbjct 1821 CTGGAAGATTCATTAATGTTTACGCCACAAATGATTGGACCCTTGG-AGTTGCATTTCGT 1879
Query 1951 GCTAGTTTAATT-TCCCAAGGATTAGCCGGAATCCAACCAATATGTATCCCTGGTATCGA 2009
|| ||| | || |||||||||||||| ||||||||||| | ||||| || || |||||
Sbjct 1880 GCAAGTCT-GTTGTCCCAAGGATTAGCTGGAATCCAACCGGTCTGTATACCGGGGATCGA 1938
Query 2010 AAACGTGGATGTAACCGATATGGTGGAAGGTCACTCTTCATATCTATGGAAAACTCAGCA 2069
| | |||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct 1939 AGATGTGGATGTAACCGATATGGTGGAAGGTCACTCATCTTACCTATGGAAAACTCAACA 1998
Query 2070 GATTTTAGAAAGACTCGAGA-TCGACA-CATATTACCCTGTTTTTCGAGACACTCTTTAA 2127
|| | ||||||||||| | ||| || | | |||||| ||||||||||||||||| |||
Sbjct 1999 TATCCTGGAAAGACTCGA-ACTCGTCAAC-TCTTACCCCGTTTTTCGAGACACTCTCTAA 2056
Query 2128 CCAAA 2132
| |||
Sbjct 2057 CTAAA 2061
Score = 278 bits (150), Expect = 2e-73
Identities = 428/554 (77%), Gaps = 52/554 (9%)
Strand=Plus/Plus
Query 104 TTTCGATGGTGGAAGCTACGTCGAATTTGACGCCGA-CTCAGAGATATGCGGCCGGCGCA 162
||| |||||||||||||||||||||||||||||| | | |||||||||||||| |||||
Sbjct 49 TTT-GATGGTGGAAGCTACGTCGAATTTGACGCC-ATCGCAGAGATATGCGGCAAGCGCA 106
Query 163 TTGTTTGCGATCGCTTTGAACCAAGCGCAAATCAACCAGACTCAGCCGCTGGGAACCCCG 222
|||||||||||||| | ||||||||||| |||| ||||||| ||| | |||| ||||
Sbjct 107 TTGTTTGCGATCGCGCTCAACCAAGCGCAGATCAGCCAGACTAAGCTATTCGGAATCCCG 166
Query 223 GCGG-CGGA--A-GACG-ACG-A-CGGAG-G-C-GATGAAGAGCGA-A---GA-AGC-AA 266
|| || | | | || | | | ||||| | | || ||| ||| | | || ||| ||
Sbjct 167 GCCATCG-ACCACGGCGGAGGTAACGGAGAGTCTGA-GAATAGCCATACCAGAGAGCCAA 224
Query 267 TT-GCAGT-AGCGGAGATTCTGTCTCCGATGACCCC-AGCCTTTGGGTACACGAGACGTC 323
| |||| | ||| ||| || ||||||||||| | | | ||||||| ||||| | ||
Sbjct 225 TCAGCAGCGA-CGGTGATCCTATCTCCGATGACGCGGATC-TTTGGGTCCACGA-A-GTT 280
Query 324 T--GGCCTTCTTC-GCCCCGTTTTCAGATGTCTTGAGATTGATTCAC-CGGCTTGGCTTG 379
| ||||| | || | || ||||||||||||||| |||||||||| | | ||||||| ||
Sbjct 281 TCCGGCCT-CATCCGACCTGTTTTCAGATGTCTTCAGATTGATTC-CTCAGCTTGGCATG 338
Query 380 GTCTCGAGCAAACAGCTTGCT-CTTCTCCGGCTAAGCACCACATCGGGGCGTTCA-CGAG 437
| || ||| | | | || ||| || ||| ||||||| | |||||||| ||||||| | ||
Sbjct 339 GCCTTGAGGAGATATCT-GCTTCTACTCAGGCTAAGGATCACATCGGTGCGTTCATCAAG 397
Query 438 GTTACTCTCAGAAGA----AGCGA--ATGATGCT--T-CT-GCCGAGATGGTGGAGCAAG 487
||||||||||| || || || |||||| | | || | || ||||||||| |||
Sbjct 398 -TTACTCTCAGAGGATGTGAGTGATGATGATGATAATTCTAGT-GAAATGGTGGAGAAAG 455
Query 488 AGATGGCCTTAGCTAAAGCTGCTGATGCTATGGTGCATAGCATTC-AAT--GCTCTGTAT 544
||| |||||||||||||||||||| |||||||| || | ||||| || |||||||||
Sbjct 456 AGACCGCCTTAGCTAAAGCTGCTGAAGCTATGGTTCAAAACATTCGAAGCAGCTCTGTAT 515
Query 545 CTATAGATGCTAAGAAGGAGAAGCATCAAGAATACGAAAACGAATGCCGTGAGAAATATG 604
|| | || ||||||| |||||| ||| |||| ||||||||||||||||||||| |||
Sbjct 516 CTGTGGAAGCTAAGATGGAGAAACATGTGGAATTCGAAAACGAATGCCGTGAGAAGTATT 575
Query 605 CTGTTCCTGAGGTA 618
|||||| ||||||
Sbjct 576 ATGTTCCCGAGGTA 589
> Ahg328137 jgi|Araly1|328137|fgenesh1_pm.C_scaffold_7000364
Length=396
Score = 514 bits (278), Expect = 1e-144
Identities = 329/353 (93%), Gaps = 5/353 (1%)
Strand=Plus/Minus
Query 4 TTTCTCGGGATTTCGAAATTTGACGGTGATCTGA-TTTCCAACGATTTTTTCTCTTCCAT 62
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct 375 TTTCTCGGGATTTCGAAATTTGACGGTGATCTGACTTT-CAACGAATTTTTCTCCTCCAT 317
Query 63 GGCttt-ttttCGCTGATCGGTAAATCAAACGTTTGTTTCGGTTTCGATGGTGGAAGCTA 121
| ||| |||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 316 -GTTTTCTTTTGGCTGATCGGTAAATCAAACGTTCGTTTCGGGTTCGATGGTGGAAGCTA 258
Query 122 CGTCGAATTTGACGCCGACTCAGAGATATGCGGCCGGCGCATTGTTTGCGATCGCTTTGA 181
|||| ||||||||| |||| |||||||||||||||||||||||||| |||||||| | |
Sbjct 257 CGTCTAATTTGACGTCGACGCAGAGATATGCGGCCGGCGCATTGTTCGCGATCGCGCTCA 198
Query 182 ACCAAGCGCAAATCAACCAGACTCAGCCGCTGGGAACCCCGGCGGCGGAAGACGACGACG 241
||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 197 ACCAAGCACAAATCAACCAGACTCAGCCGCTGGGAATCCCAGCGGCGGAAGACGACGACG 138
Query 242 GAGGCGATGAAGAGCGAAGAAGCAATTGCAGTAGCGGAGATTCTGTCTCCGATGACCCCA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 GAGGCGATGAAGAGCGAAGAAGCAATTGCAGTAGCGGAGATTCTGTCTCCGATGACCCCA 78
Query 302 GCCTTTGGGTACACGAGACGTCTGGCCTTCTTCGCCCCGTTTTCAGATG-TCT 353
||||||||||||||||||||||| |||||||||| ||||||||||| || |||
Sbjct 77 GCCTTTGGGTACACGAGACGTCTAGCCTTCTTCGACCCGTTTTCAGGTGATCT 25
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93511551475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5