BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36240.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491007 jgi|Araly1|491007|fgenesh2_kg.7__440__AT4G36240.1 1085 0.0
Ahg323669 jgi|Araly1|323669|fgenesh1_pm.C_scaffold_5001213 124 9e-28
> Ahg491007 jgi|Araly1|491007|fgenesh2_kg.7__440__AT4G36240.1
Length=897
Score = 1085 bits (587), Expect = 0.0
Identities = 814/917 (89%), Gaps = 42/917 (5%)
Strand=Plus/Plus
Query 3 AGACAAAAATGGA--GTGT-G---TAGAAGCATTTCTCGGTGATTTTTCCGTCGACGATC 56
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 AGACAAAAATGGAGTGTGTAGAACTAGAAGCATTTCTCGGTGATTTTTCCGTCGACGATC 60
Query 57 TTCTCGACCTCTCTAACGCCGACA---C-TTC-T---T-TAGAGTCGTCTTCGTCACAAA 107
|||||||||||||||||||||||| | ||| | | |||||||||||| || ||||
Sbjct 61 TTCTCGACCTCTCTAACGCCGACACTGCTTTCGTACGTGAAGAGTCGTCTTCATCTCAAA 120
Query 108 GAAAAGAAGACGAACAAGAACGTGAGAAATTTAAGAGCTTTTCTGACCAAAGTACCCGTC 167
|| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 121 GAGAAGAAGGCGAACAAGAACGTGAGAACGCTAAGAGCTTTTCCGACCAAAGTACCCGTC 180
Query 168 TTTCACCGCCAGAGGATCTCTTATCTTTTCCCGGCGACGCTCCGGTTGGTGATTTGGAGG 227
||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 181 TTTCACCACTGGAGGATCTCTTATCTTTTCCCGGCGACGTTCCAGTTGGTGATTTGGAGG 240
Query 228 ACTTAGAGTGGTTATCCAACTTCGTGGAGGATTCTTTCTCAGAATCGT-ATATTTCGAGT 286
|| |||||||| |||||||||||||||||||||||||||||||||| | || |||| |||
Sbjct 241 ACCTAGAGTGGCTATCCAACTTCGTGGAGGATTCTTTCTCAGAATC-TCATCTTTCCAGT 299
Query 287 GATTTCCCGGTGAATCCAGTCGCGTCGGTGGAGGTTCGGAGACAGTGCGTTCCTGTTAAA 346
||||| ||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 300 GATTTTCCGGTGACTCCAGTCGCGTCAGTGGAGGTTCAGAGACAGTGCGTTCCGGTTAAA 359
Query 347 CCTAGAAGCAAACGCCGCCGCACCAACGGCCGTATCTGGTCTATGGAGTCTCCATCTCCT 406
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 360 CCTAGAAGCAAACGCCGCCGCACCAACGGCCGTATCTGGTCTCTGGAGTCTCCATGTCGG 419
Query 407 CTGCTATCCACCGCTGTTGCCAGAAG-GAAGAAGAGAGGGAGACAGAAGGTGGATGCATC 465
|||||||||||||| ||||||| ||| |||||||||| ||||||| |||| ||| |||||
Sbjct 420 CTGCTATCCACCGCCGTTGCCA-AAGAGAAGAAGAGATGGAGACATAAGGCGGAGGCATC 478
Query 466 GTACGGTGGCGTAGTCCAGCAGCAGCAGCTGAGGCGGTGCTGCAGCCATTGTGGAGTCCA 525
| |||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 479 TTGCGGTGGCGAAGTCCAGCAGCAACAGCCGAGGCGATGCTGCAGCCATTGTGGAGTCCA 538
Query 526 GAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAGACACTGTGTAATGCTTGTGG 585
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 539 GAAGACGCCTCAATGGAGAATGGGTCCATTAGGTGCGAAAACATTATGTAATGCTTGTGG 598
Query 586 GGTCCGGTTTAAGTCGGGTCGACTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATT 645
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGTCCGGTTTAAGTCGGGTCGGCTTTTACCCGAATATAGACCCGCTTGTAGCCCAACATT 658
Query 646 CACCAACGAGATTCACTCTAACTCTCACCGGAAAGTGTTGGAGCTACGGCTCATGAAAGT 705
||||| |||||||||||| |||||||||||||||||||||||||| || ||||||| ||
Sbjct 659 CACCACCGAGATTCACTCGAACTCTCACCGGAAAGTGTTGGAGCTGCGACTCATGAGAGC 718
Query 706 GGCGGATCCGGCTCGGGTTTAAGCCAtttt-ttt--CTATCTTGAAATTTTATCAATGCC 762
||||||||||| |||||||||| || |||| ||| ||||||| |||| ||| | |
Sbjct 719 GGCGGATCCGGGTCGGGTTTAACCCGTTTTGTTTTTCTATCTTAAAATGTTA--A---C- 772
Query 763 ATGTGCATTGTGTAATCTTGTAAACAGAGAATCAGAGAGAGATCCGTAGACTGTTTTCAC 822
| ||| |||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 773 A-----ATT----AATCTTGTAAGCAGAGAATCAGAGAGGGATCCGTAGACTGCTTTCAG 823
Query 823 ATTCATGAAGTTAAGCTATAATTAGAGACAATTTTATTTG-ATAGAGTATGCATGATTAG 881
||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 824 ATTTATGAACTTAAGCTATAATTAGAGACAATTTTATTTTTATAGA--AT--ATGATTAG 879
Query 882 AAATCATGATCATTAAA 898
||||||| |||||||||
Sbjct 880 AAATCATAATCATTAAA 896
> Ahg323669 jgi|Araly1|323669|fgenesh1_pm.C_scaffold_5001213
Length=945
Score = 124 bits (67), Expect = 9e-28
Identities = 150/189 (79%), Gaps = 9/189 (5%)
Strand=Plus/Plus
Query 496 GAGGCGGTGCTGCAGCCATTGTGGAGTCCAGAAGACGCCTCAATGGAGAATGGGTCCATT 555
||||||||| || | |||||||| || ||||| ||||| || |||||| || |||||
Sbjct 675 GAGGCGGTG-TG--GTCATTGTGGCGTTCAGAAAACGCCGCAGTGGAGAGCAGGACCATT 731
Query 556 AGGTGCGAAGACACTGTGTAATGCTTGTGGGGTCCGGTT-TAAGTCGGGTCGACTT-TTA 613
||| || ||||| |||||||||| ||||| || | ||| || || ||||| || |||
Sbjct 732 AGGAGCTAAGACGTTGTGTAATGCGTGTGGTGTGC-GTTACAAATCAGGTCG-GTTATTA 789
Query 614 CCCGAATATAGACCCGCTTGTAGCCCAACATTCACCAACGAGATTCACTCTAACTCTC-A 672
||||||||||||||||||||||||||||| ||| | | ||| ||||||| ||| | | |
Sbjct 790 CCCGAATATAGACCCGCTTGTAGCCCAACTTTCTCGAGTGAGCTTCACTCCAAC-CACCA 848
Query 673 CCGGAAAGT 681
||| |||||
Sbjct 849 CCGTAAAGT 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5