BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36250.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491006 jgi|Araly1|491006|fgenesh2_kg.7__439__AT4G36250.1 2610 0.0
> Ahg491006 jgi|Araly1|491006|fgenesh2_kg.7__439__AT4G36250.1
Length=1693
Score = 2610 bits (1413), Expect = 0.0
Identities = 1619/1714 (94%), Gaps = 32/1714 (2%)
Strand=Plus/Plus
Query 3 TTCCTTTTCCACTTTTAACCATCACCCTATAAGTGGTTAT-AACTAGTAACTTGAAATAG 61
||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1 TTCATTTTCCACTTTTAACCATCACCCTATAAGTGGTTATAAATTA-TAACTTGAAATAG 59
Query 62 AAACACTCTATCTCTAAAAGAGGCAACCAAACAAACAAGGTCTAGCTTTTTATAACCAAA 121
|||||||||| |||||||||||| ||||| | |||||||||||| ||||
Sbjct 60 AAACACTCTAGCTCTAAAAGAGG--------CAAAC-A-----AGCTTTTTATAAGCAAA 105
Query 122 CTCTGCTTCTGAACAGAGTTAGTCAaagagagagaagccatggaagctatgaaggagact 181
|||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 106 CTCTGCTTCTGAACAGAGTTAG-C-CAGAGAGAGGAGCCATGGAAGGTATGAAGGAGACT 163
Query 182 gtggaggagagcttgagagagatgagagagacgtttgcgagtgggaggacgaggagTCTG 241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 164 GTGGAGGAGAGCTTGAGAGAGATGAGAGAGACGTTTGCTAGTGGGAGGACGAGGAGTCTG 223
Query 242 AAGTGGAGGAAGGCACAGATCGGAGCTATATACGAGATGGTTAAAGACAACGAAGACAAG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AAGTGGAGGAAGGCACAGATCGGAGCTATATACGAGATGGTTAAAGACAACGAAGACAAG 283
Query 302 ATCTGCAATGCTCTGTTTCAAGATTTGGGCAAACACAGTACTGAAGCTTTTAGAGATGAG 361
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ATCTGTAGTGCTCTGTTTCAAGATTTGGGCAAACACAGTACTGAAGCTTTTAGAGATGAG 343
Query 362 CTTGGTGTTGTCTTGCGAACAGCTACTGTTGCAATCAACTGTCTTGATAAATGGGCCGTC 421
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 344 CTTGGTGTTGTCTTGAGATCAGCTACTGTTGCAATCAACTCTCTTGATAAATGGGCCGTC 403
Query 422 CCCAAACATAGCAAACTTCCTCTGTTGTTCTACCCAGCAAAAGGGAAAGTCATATCGGAA 481
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 404 CCCAAACATAGCAACCTTCCTCTGTTGTTCTACCCAGCAAAAGGGAAAGTGATATCGGAA 463
Query 482 CCCTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATCTTTGTCTCTGGAT 541
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CCGTATGGGACGGTTCTTGTTCTGTCTAGCTGGAATTTTCCTATATCTTTGTCTCTGGAT 523
Query 542 CCATTGATTGGGGCAATAGCAGCAGGAAATACCGTGCTTCTCAAGTCATCTGAACTAAGC 601
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 524 CCATTGATTGGGGCAATAGCAGCAGGGAATACCGTGCTTCTCAAGTCATCTGAACTAAGC 583
Query 602 CCTAACGCATCTGCCTTCCTTGCCAAGACAATTCCAGCTTATCTCGATACTAAAGCCATC 661
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 584 CCTAACGCATCTGCCTTCCTTGCGAAGACAATCCCGGCTTATCTCGATACTAAAGCTATC 643
Query 662 AAAGTTATCGAAGGAGGACCTGATGTCGCTACTATCCTCTTGCAGCATCAATGGGACAAG 721
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 644 AAAGTTATCGAAGGAGGACCTGATGTCGCCACTATCCTCTTGCAGCATCAGTGGGACAAG 703
Query 722 ATCTTCTTCACCGGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAGCACAGCAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCTTCTTCACCGGGAGTCCCAAGATTGGAAGGATCATAATGGCTGCAGCAGCACAGCAT 763
Query 782 CTGACTCCTGTGACATTGGAGCTTGGTGGAAAATGTCCCACCATTGTTGATCATCACACC 841
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 764 TTGACTCCTGTGACACTGGAGCTTGGTGGAAAATGTCCCACTATTGTTGATCATCACACC 823
Query 842 ATTTCAAAGAACATCAAGTCGGTTGTCAAGAGGATTGCTGGAGGAAAATGGGGATCTTGC 901
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 824 ATTTCAAAGAACATCAAGTCGGTTGTGAAGAGGATTGCTGGAGGAAAATGGGGATCTTGC 883
Query 902 AATGGACAAGCTTGTATCTCTGTAGATTACGTTCTTATCGAAAAGAGTTTCGCGCCTACT 961
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 884 AGTGGACAAGCTTGTATCTCTGTAGATTACGTTCTTATCGAAAAGAGTTACGCGTCTTCT 943
Query 962 CTGATTGATATGTTGAAGCCTACGATAAAGTCTTTCTTTGGCGAAAATCCTAAAGAATCT 1021
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 944 CTGATTGATATGTTGAAGCCTACGATAAAGTCTTTCTTTGGGGAAAATCCAAAAGAATCT 1003
Query 1022 GGATGTCTCTCAAGGATTGCAAACAA-GCACCACGTTCAGAGACTGTCTCGTCTTCTTAG 1080
|||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1004 GGATGTCTCTCAAGGATTGCAA-CAAAGCAACACGTTCAGAGACTGTCTCGTCTTCTTAA 1062
Query 1081 CGATCCTCGTGTCCAAGCTTCCATCGTCTATGGTGGTTCTATAGACGAAGATAAGCTGTA 1140
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1063 TGATCCTCGTGTCCAAGCATCCATCGTCTATGGTGGTTCCATAGACGAAGAGAAGCTGTA 1122
Query 1141 TGTTGAGCCAACGATCTTGTTGGACCCTCCTCTTGATTCTGAGATCATGAATGAAGAGAT 1200
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1123 TGTTGAGCCAACGATCCTGTTGGATCCTCCTCTTGATTCTGAGATCATGAATGAAGAGAT 1182
Query 1201 CTTTGGTCCAATTCTCCCGATTATCACGGTACGTGACATCCAAGAAAGCATAGGGATCAT 1260
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1183 CTTTGGTCCAATTCTCCCGATTATTACTGTACGTGACATCCAAGAAAGCATAGGGATCAT 1242
Query 1261 TAATACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAAC 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TAAGACAAAACCGAAGCCACTTGCCATTTATGCATTCACAAATGACGAGAACCTTAAAAC 1302
Query 1321 TAGAATTTTGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGTA 1380
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TAGAATCTTGTCAGAAACATCCTCAGGAAGTGTTACCTTCAATGACGTCATGATCCAGTA 1362
Query 1381 TATGTGTGATGCGTTACCTTTTGGAGGAGTGGGAGAAAGTGGAATAGGGAGGTATCACGG 1440
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1363 TATGTGTGATGCGTTGCCCTTTGGAGGAGTAGGAGAAAGTGGAATAGGGAGGTATCACGG 1422
Query 1441 GAAATACTCATTT-GATTGTTTCAGTCACGAGAAAGCAATAATGGAAGGAAGCTTAGGTA 1499
||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1423 GAAATACTC-TTTCGATTGTTTCAGTCACGAGAAAGCAATTATGGAAGGAAGCTTAGGAA 1481
Query 1500 TGGATCTTGAAGCTCGATACCCTCCATGGAACAACTTCAAGCTCACCTTCATCAGACTCG 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1482 TGGATCTTGAAGCTCGATACCCTCCATGGAACAACTTCAAGCTCACCTTCATTAGACTTG 1541
Query 1560 CATTTCGTGAAGCTTACTTCAAGCTTATCCTCCTTATGCTTGGTCTTAAAAGATAAAAGG 1619
||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1542 CATTTAGTGAAGCGTACTTCAAGCTTATCCTCCTTATGCTTGGTCTCAAAAGATAAAAGT 1601
Query 1620 GGGAAAGTGAGAGAC--AGAGA----CACATACACACAAACAGAGACAATATAAGTGATT 1673
|||| ||||||||| ||||| ||||||||||| ||||| | ||||||||||||
Sbjct 1602 GGGAGAGTGAGAGAGTGAGAGAGAGACACATACACACGCACAGA--CGATATAAGTGATT 1659
Query 1674 GAATTACAT--CACACTTATGTTTGCTTATCATA 1705
|||||| || ||||||||||||||||| |||||
Sbjct 1660 GAATTATATATCACACTTATGTTTGCTTTTCATA 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5