BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36260.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491005 jgi|Araly1|491005|fgenesh2_kg.7__438__AT4G36260.1 1973 0.0
> Ahg491005 jgi|Araly1|491005|fgenesh2_kg.7__438__AT4G36260.1
Length=1312
Score = 1973 bits (1068), Expect = 0.0
Identities = 1254/1337 (94%), Gaps = 39/1337 (3%)
Strand=Plus/Plus
Query 35 gagagagagaaagagagaTCTTGTAGAACATTCGAATTTAGATTCGGAGAGCAGCAACAA 94
|||||||||| |||||||||||| ||||||||||| ||||||||| || || ||||| ||
Sbjct 1 GAGAGAGAGAGAGAGAGATCTTGGAGAACATTCGAGTTTAGATTC-GA-AG-AGCAAAAA 57
Query 95 CACCCACAAGCTAAGGGAGTAT---AAGGCTGAATTTGAGTGAGAAGAAGAAGGAGAAAA 151
|| || | | | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 58 CA-CC-C-A-C-AAGGGAGTATAAGAAGGCTGAATTTGAGTGAGAAGAAGAAGGAGAAAA 112
Query 152 AAGGATAAGGATTTCATGGTAATTAGGGTTTCTGAATTATGGATATAGTTGGGTCAAGAT 211
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 113 AAGGATAAGGATTTCATGGTAATTAGGGTTTCTGAATTATGGATATTGCTGGGTCAAGAT 172
Query 212 TAGGGTTTGAAGTTTTAGGTCTTAAAAAATGGCTGGGATATTCTCATTAGGAGGT----- 266
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TAGGGTTTAAAGTGTTAGGTCTTAAAAAATGGCTGGGATATTCTCATTAGGAGGTAACAA 232
Query 267 ----aacaacaacaacaacggagacgaagaagaagaaaatcaacaacaacaaaagacaaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CAACAACAACAACAACAACGGAGACGAAGAAGAAGAAAATCAACAACAACAAAAGACAAA 292
Query 323 TTGGGTTTGGTATAGATCAAACGCAAACACCAATAATATCAACCCAAGCTCGAGCCAACA 382
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 293 TTGGGTTTGGTATAGATCAAACACAAACACCAATAATACCAACCCAAGCTCGAGCCAACA 352
Query 383 AGTATGGCAGATTCCACCAGAGCAGATGCTCATGCATCATCATTCACATCCACAACAACA 442
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 353 AGTATGGCAGATTCCACCAGAGCAGATGCTCATGCATCATCATCCACATCCACAACAACA 412
Query 443 AAGCTTAGATCTTTATCCAGGTCATCAGATCGACGTCTCTGATTTAGCCACTTCATCAAG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AAGCTTAGATCTTTATCCAGGTCATCAGATCGACGTCTCTGATTTAGCCACTTCATCAAG 472
Query 503 ATCCATCACCATTAGCTGTCGGGACTGTGGGAACCAAGCCAAGAAAGACTGCACTCATAT 562
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 473 ATCCATCACCATAAGCTGTCGGGACTGTGGGAACCAAGCCAAGAAAGACTGCACTCACAT 532
Query 563 GCGTTGCAGGACTTGCTGTAAAAGCCGTGGATTCGATTGTTCCACTCACGTCAGGAGCAC 622
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 533 GCGTTGCAGGACTTGCTGTAAGAGCCGTGGATTCGATTGTTCCACTCACGTTAGGAGCAC 592
Query 623 GTGGATCCCCGTTGCGAGGCGCCGCGAGAGACAACAGCAGCTTCATATGTCCACATCTGG 682
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGGATCCCCGTTGCGAGACGCCGCGAGAGACAACAGCAGCTTCATATGTCCACATCTGG 652
Query 683 AGGTGGCGGCGGAAGCGGTAGTGGCGGTGCTGGAGGAGGCGGTTCGAGTATCCCAAAACG 742
|||||||||||||||||||||||| || | |||||| ||||||||||||||||| |||||
Sbjct 653 AGGTGGCGGCGGAAGCGGTAGTGGTGGCGGTGGAGGCGGCGGTTCGAGTATCCCTAAACG 712
Query 743 CCATAGGGACCCTACTCTTCCAGGAACATCCTCCTCTTCTCGCTTGCCATCCCACTCAGC 802
||| ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 713 CCACAGGGATACTACTCTTCCAGGAACATCCTCCTCTTCTCGCTTACCATCCGACTCAGC 772
Query 803 AGGGTTAGAAATGGGGGAGGCAAGTTTTCCGGGGGAAGTGAGCTCAGATGCGCTTTTTCG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGGGTTAGAAATGGGGGAGGCAAGTTTTCCGGGGGAAGTGAGCTCAGATGCGCTTTTTCG 832
Query 863 GTGTGTTAAAATGAGTGGCGTAGATGATGGAGGAGATGGTCAGTACGCTTATCAAACGAC 922
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 833 GTGTGTTAAAATGAGTGGCGTAGATGATGGAGGAGATGGTCAATATGCTTATCAAACGAC 892
Query 923 GGTCAATATTGGAGGTCATCTCTTCAAAGGAATTCTGTATGACCAAGGCCCTGAAAGCAG 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GGTCAATATTGGAGGTCATCTCTTCAAAGGAATTCTGTATGACCAAGGCCCTGAAAGCAG 952
Query 983 CTACATGAGTGGCGGTAGTGGCGGAAGCGATCATCAGAGCTCATCCGCAGGAGGCGGAGG 1042
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 953 CTACATGAGTGGCGGTAGTGGCGGAAGCGATCATCAAAGCTCATCCGCAGGAGGCGGAGG 1012
Query 1043 AGGAGGACATCCGTTTAATCCTCCAGTTGTGACCGACGGTGGCGGAGGAGTATCATCGGC 1102
||||||| ||| |||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 1013 AGGAGGAAATCAGTTTAATCCTCCCGTTGTGACTGACGGTGGCGGAGGAGTGTCTTCGGC 1072
Query 1103 CATGTTTGTAGATCCAAATTCTGGTGGTTACTATTCAAGTAACATGACGACTAGTGTGTT 1162
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CATGTTTGTAGATCCTAATTCTGGTGGTTACTATTCAAGTAACATGACGACTAGTGTGTT 1132
Query 1163 CATGCCACCAGGTACGCAATTCTATCAAAATCCACCAAGATCTTGATTAAATCAAGAACT 1222
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1133 CATGCCACCAGGTACGCAATTCTATCAAAACCCACCGAGATCTTGATTAAATCAAGAACT 1192
Query 1223 TGACTTTTTATTTTTGTTATA-T-AGTGATTCTATATATGTAATGTGTCTTTTGTTTTGT 1280
|| ||||| || || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1193 CGAGTTTTT-TTGTT-TTATAGTGAGTGATTCTATATATGTAATGTGTCTTTTGTTTT-- 1248
Query 1281 TGCTCTGGTCAATCATATGTAATACTTAGACGATTTAAACATTTGTATGTCTGTTTGTTG 1340
| | | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1249 --C-------A-T-AT--GTAATACTTAGACGATTTAAACATTTGTACGTCTGTTTGTTG 1295
Query 1341 TCATGTATAATGTATGT 1357
| ||||||||||| |||
Sbjct 1296 TTATGTATAATGTGTGT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5