BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36280.1
Length=2161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491004 jgi|Araly1|491004|fgenesh2_kg.7__437__AT4G36280.1 2931 0.0
Ahg888428 jgi|Araly1|888428|Al_scaffold_0007_414 2115 0.0
Ahg944247 jgi|Araly1|944247|scaffold_700476.1 2025 0.0
> Ahg491004 jgi|Araly1|491004|fgenesh2_kg.7__437__AT4G36280.1
Length=1950
Score = 2931 bits (1587), Expect = 0.0
Identities = 1830/1945 (94%), Gaps = 25/1945 (1%)
Strand=Plus/Plus
Query 99 ATGCCTCCTATGGCGAAAAATGCAGCAGTCACTGATGTTGTTCATCTCGACAGTGATAGT 158
||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 23 ATGCCTCGTATGGCGGAAAATGCAGCAGTCGCTGATGTTGTTCATCTCGACAGTGATAGT 82
Query 159 GACAGTGACAACGGAGTAGTAGGAGGAAGAGAATCAGCAAGTACAATCGCTGGTGCTGCG 218
||||||||| || | | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 83 GACAGTGACGAC-G-G-AGTAGGAGGAAGAGAATCAGCAAGTACAATCGCTGATGCTGCG 139
Query 219 ACAATGGCTCCTCGAGAGACCTTAGAATGCCGGAGCTTTTGGAAGGCGGGAGATTACTTT 278
|| |||||||| | | |||||||||||||||||||| || ||||| |||||
Sbjct 140 ACGGTGGCTCCT------A-C--GGAATGCCGGAGCTTTTGGAAAGCCGGAGAAAACTTT 190
Query 279 GTGATACCGAACGTTGTGACTCCTACTGCTCCAGGTATGCTTGAGCATGCTCGAGTTCAT 338
|||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 191 GTGATACCGATCGTTGTGACTCCGACTTCTCCAGGTTTGCTTGAGCATGCTCGAGTTCAT 250
Query 339 CCCAGGTTTCTTCACTCGAATGCTACCTCACACAAATGGGCTTTTGGAGCAATCGCTGAG 398
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 251 CCCAGGTTTCTTCACTCGAATGCTACTTCACACAAATGGGCTTTTGGAGCAATCGCTGAG 310
Query 399 CTACTTGACAATGCTGTTGACGAGATACAAAATGGTGCTACGTTTGTTAAGATTGATAAG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CTACTTGACAATGCTGTTGACGAGATACAAAATGGTGCTACGTTTGTTAAGATTGATAAG 370
Query 459 ATCAATATTGTCAAAGATAATTCCCCAGCTTTAGTTTTCCAAGATGATGGTGGTGGGATG 518
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 371 ATCAATATTGTCAAAGATAATTCCCCAGCTTTACTTTTCCAAGATGATGGCGGTGGGATG 430
Query 519 GATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAGTCTAATACA 490
Query 579 ACGATTGGACAGTATGGAAATGGTTTCAAGACAAGTACCATGAGACTTGGAGCTGATGCT 638
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 491 ACAATTGGACAGTATGGAAATGGTTTCAAAACAAGTACCATGAGACTTGGAGCTGATGCC 550
Query 639 ATCGTTTTTAGTCGCTCCACTCGTGGAGGCACATCTACTCAGAGCGTTGG-CATTCTGTC 697
|| |||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||
Sbjct 551 ATTGTTTTTAGTCGCTCAACTCGTGGAGGCACATCTACTCAGAGTGTTGGTC-TTCTGTC 609
Query 698 ATACACATTCCTTAGAAAAACTGGTCAGGATGATGTCACTGTTCCTATGATTGATATTGA 757
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 610 ATACACATTCCTCAGAAAAACTGGTCAGGATGATGTCATTGTTCCTATGATTGATTTTGA 669
Query 758 TATATCCAAGGAGCGACCACAACCAATTATCTATGGATCTCCAGAAGATTGGGCTGCCAA 817
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 670 TATATCCAAGGAGCGACCACAACCAATTATCTATGGATCTCAAGAAGATTGGGCTGCCAA 729
Query 818 CCTTGAAATTCTACTCAAATGGTCTCCGTTTTCTACAGAGGACGAACTTTTGCA---GCA 874
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 730 CCTTGAAATTCTACTCAAATGGTCTCCGTTTTCTACAGAAGACGAACTTTTACAACAGCA 789
Query 875 GTTCGAGGACGTTGGAACTCATGGAACAAAAGTAATTATATACAACTTGTGGCTTAATGA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GTTCGAGGACGTTGGAACTCATGGAACAAAAGTAATTATATACAACTTGTGGCTTAATGA 849
Query 935 TGAAGGAATCTATGAGCTGAGTTTTGACGACGACGAGGAGGATATCCGGCTCCGAGATGA 994
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 850 TGAAGGAATCTATGAGCTGAGTTTTGACGACGACGACGAGGACATCCGGCTCCGAGATGA 909
Query 995 GAGTGTGAATGACGGAAAACGGTTGCACCATAAAATATTGGAACTGAGATCTCATATTTC 1054
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 910 AAGTGTCAATGACGGTAAACGGTTGCACCATAAGTTATTGGAACTGAGATCTCATATTTC 969
Query 1055 ATACCACTTACGTTATTCTCTGAGGGCTTATGCTTCAATGTTATATCTCAAAAAGTTCAA 1114
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATACCACTTACGTTACTCTCTGAGGGCTTATGCTTCAATGTTATATCTCAAAAAGTTCAA 1029
Query 1115 AAACTTCAAAATTATAATTCGGGGAATCCCTGTGGAGCAGTTCAACATTGCTGATGGATT 1174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1030 AAACTTCAAAATTATAATTCGGGGAATCCCTGTGGAGCAGTTCAACATTGCTGATGAATT 1089
Query 1175 CAGATTTCCCGAGATTATTAAGTACAAGCCCCATACAGCTACAACGGAACAAGCTTCCAC 1234
||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1090 TAGATTTCTCGAGATTATAAAGTACAAGCCCCATACAGCTACAATGGAACAAGCTTCCAC 1149
Query 1235 TGAAATCAAAATTGGATTTGTAAAGGAGGCACCTAAGCTTGCAATCTGCGGTTTCAATGT 1294
|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1150 TGAAATCAAAGTTGGATTTGTAAAGGAGGCGCCTAAGCTTGCAATTTGCGGTTTCAATGT 1209
Query 1295 GTATCACAAAAACCGTCTCATCCGGCCTTTCTGGAAGGTCACTATGGGAGGGGACTCGAC 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 CTATCACAAAAACCGTCTCATCCGGCCTTTCTGGAAGGTCACTATGGGAGGGGACTCGAC 1269
Query 1355 AGGCCACGGTGTTGTGGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCACGATAAGCA 1414
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1270 AGGCAATGGTGTTGTGGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCATGATAAGCA 1329
Query 1415 AGATTTTGAAAGGTCTTCTCTATTTCAGCGGCTGGAGGCGAGGTTGAAAAAGATTGTCTA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 AGATTTTGAAAGGTCTTCTCTATTTCAGCGGCTGGAGGCGAGGTTGAAAAAGATTGTCTA 1389
Query 1475 TAGTTACTGGTATAGCCACTGCCACCTTTTAGGATACCATAAATATCAAATGCCTGCAGA 1534
|||||||||||||| |||||||||| |||| |||||||||| |||||||||||||||||
Sbjct 1390 TAGTTACTGGTATACCCACTGCCACGTTTTTGGATACCATACTTATCAAATGCCTGCAGA 1449
Query 1535 TAAGTCGAAAAAGATAGCAATACCTGATCAACCT-CCTACTATCAGTACAGTCAATCCTT 1593
|||||||||||||||||||||||||||||||| | |||||| ||| |||| |||||||||
Sbjct 1450 TAAGTCGAAAAAGATAGCAATACCTGATCAAC-TGCCTACTGTCAATACATTCAATCCTT 1508
Query 1594 CGCCTTTGCCTTCTGATAAAATTAGTCAAGGTGGCCCTATAATACGTGAAATCAATCTTA 1653
|||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||||||
Sbjct 1509 CGCCTTTGCCTTCTGATAAAATAAGTCAAGGTGGTCCTATCATACATGAAATCAATCTTA 1568
Query 1654 GTAACGCCACCTCAAGCCGTACAGTTGCTTTTGCTTCGCCACATTTGAGAAATTCCACTG 1713
|||||||||| |||||||||||||||||| |||| |||||||| |||||||||||| ||
Sbjct 1569 GTAACGCCACTTCAAGCCGTACAGTTGCTGTTGCAGCGCCACATATGAGAAATTCCA-TG 1627
Query 1714 G-TTTAAGAAGTAACTTTCAACCCGTGCAGCTCAACCCACAACCTACAGCTGCCGATACT 1772
| ||||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||||
Sbjct 1628 GGTTTAAGAAGTAACTTCCAACCTGTGCAGCTCAACCCACAACCTGCGGCTGCTGATACT 1687
Query 1773 GGAAACAACCTCGATGGCAAGTCAGCGGGTGAGAT-ACGCCAAGAGAACTTACAACTCTT 1831
||||||| ||||| ||||||||| ||||||||||| | || |||||||||| | ||||||
Sbjct 1688 GGAAACACCCTCGTTGGCAAGTCCGCGGGTGAGATCA-GCGAAGAGAACTTGCGACTCTT 1746
Query 1832 CATGAGGTGCGAGGAATATATAAAGAAAGAGAATGAAACAGAACAGACGGTGAAGAGCTT 1891
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1747 CATGAGGTGCGAGGAATATATAAAGAAAGAGAATGAAATAGAACAGACGGTAAAGAGCTT 1806
Query 1892 AGAAAAAGAACTGGAAGAATTTAAAAGTAAATGTGCACACCTTGCTCTGCTCGTGGATGC 1951
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1807 AGAAAAAGAACTGGAAGAAGTTAAAAGTAAATGTGCACAACTTGCTCTGCTTGTGGATGC 1866
Query 1952 TAAGAAGAAGGAGATGCAACAAGCTTAGTTAAAA-CGTTAAGAGTTAATTCTATCTTGAA 2010
||||||||||||||||||||||| ||||| |||| ||||| ||||||| || ||| |||
Sbjct 1867 TAAGAAGAAGGAGATGCAACAAGTTTAGT-AAAAGCGTTACGAGTTAAAACTCTCTGGAA 1925
Query 2011 TCTAAAGAACCCTAGTTTGATTCAG 2035
|||||||||||||||||||||||||
Sbjct 1926 TCTAAAGAACCCTAGTTTGATTCAG 1950
> Ahg888428 jgi|Araly1|888428|Al_scaffold_0007_414
Length=1896
Score = 2115 bits (1145), Expect = 0.0
Identities = 1596/1812 (88%), Gaps = 37/1812 (2%)
Strand=Plus/Plus
Query 187 GAGAATCAGCAAG-TAC-AATCGCTGGTGCTGCGACAATGGCTCCTCGAGAGACCTTAGA 244
||||||||||||| | | || ||||| ||||||||| ||||||||||||| ||| ||||
Sbjct 103 GAGAATCAGCAAGTTTCGAA-CGCTGATGCTGCGACGGTGGCTCCTCGAGAAACCCTAGA 161
Query 245 ATGCCGGAGCTTT-TGGAAGGCGGGAGATTACTTTGTGATACCGAACGTTGTGACTCCTA 303
||| ||||| ||| ||||| || || || |||||||||| || || ||| ||||| |
Sbjct 162 ATGTCGGAG-TTTCTGGAAAGCCGGCGAAAACTTTGTGATCCCTTCCGGTGTTACTCCAA 220
Query 304 CTGCTCCAGGTATGCTTGAGCATGCTCGAGTTCATCCCAGGTTTCTTCACTCGAATGCTA 363
|||||||||||||| ||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 221 CTGCTCCAGGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTA 280
Query 364 CCTCACACAAATGGGCTTTTGGAGCAATCGCTGAGCTACTTGACAATGCTGTTGACGAGA 423
| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 281 CTTCACATAAATGGGCTTTTGGAGCAATCGCAGAGCTACTTGACAATGCGGTTGACGAGG 340
Query 424 TACAAAATGGTGCTACGTTTGTTAAGATTGATAAGATCAATATTGTCAAAGATAATTCCC 483
| ||||| || || || ||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 341 TCCAAAACGGAGCCACCTTTGTCAAGATTGATAAGATCAATATTGTTAAAGATAATACCC 400
Query 484 CAGCTTTAGTTTTCCAAGATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCA 543
| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 401 CTGCTTTAGTTTTCCAAGATAATGGTGGTGGGATGGATCCCAATGGGATCAGAAAATGCA 460
Query 544 TGAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACGATTGGACAGTATGGAAATGGTT 603
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 461 TGAGCTTAGGCTACTCGTCAAAGAAGTCTAATACGACGATTGGACAGTATGGAAATGGTT 520
Query 604 TCAAGACAAGTACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCCACTCGTG 663
| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 521 TTAAGACGAGTACCATGAGACTTGGAGCTGATGCCATCGTGTTTAGTCGCTCAACTCGTG 580
Query 664 GAGGCACATCTACTCAGAGCGTTGG-CATTCTGTCATACACATTCCTTAGAAAAACTGGT 722
|||||| |||||| |||||| |||| | ||||||| |||||||||||||| |||||||||
Sbjct 581 GAGGCAAATCTACACAGAGCATTGGTC-TTCTGTCTTACACATTCCTTAGGAAAACTGGT 639
Query 723 CAGGATGATGTCACT-GTTCCTATGATTGATATT-GATATATCCAAG-G--AGCGACCAC 777
||||||||||| | | ||||||||||||||| || ||||||||| || | || | || |
Sbjct 640 CAGGATGATGTGA-TCGTTCCTATGATTGAT-TTCGATATATCC-AGTGTTAG-G-CCCC 694
Query 778 AACCAATTATCTATGGATCTCCAGAAGATTGGGCTGCCAACCTTGAA-ATTCTACTCAAA 836
|||||||||| ||||| ||||| | ||||||| || |||||||| || ||||| ||||||
Sbjct 695 AACCAATTATTTATGGGTCTCCCGGAGATTGGTCTACCAACCTT-AACATTCTTCTCAAA 753
Query 837 TGGTCTCCGTTTTCTACAGA-GGACGAACTTTTGCAGCAGTTCGAGGACGTTGGAACTCA 895
||||| |||||| | || | ||||||||||||||||||||||||||| ||||||||||
Sbjct 754 TGGTCCCCGTTTCCAAC-TATGGACGAACTTTTGCAGCAGTTCGAGGATATTGGAACTCA 812
Query 896 TGGAACAAAAGTAATTATATACAACTTGTGGCTTAATGATGAAGGAATCTATGAGCTGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 813 CGGAACAAAAGTAATTATATACAACTTGTGGCTTAATGATGAAGGAATCTATGAATTGAG 872
Query 956 TTTTGACGACGACGAGGAGGATATCCGGCTCCGAGATGAGAGTGTGAATGACGGAAAACG 1015
|||||||||||| || |||||||| |||||||||||||||| || | || || |||||
Sbjct 873 TTTTGACGACGATGATGAGGATATACGGCTCCGAGATGAGAATGCCCAGGATGGGAAACG 932
Query 1016 GTTGCAC-CATAAAATATTGGAACTGAGATCTCATATTTCATACCACTTA-CGTTATTCT 1073
|||| || | ||||| ||||||||| ||||||||||||||||||| | || || ||||
Sbjct 933 GTTGTACGC-TAAAACATTGGAACTAAGATCTCATATTTCATACCGC-TATCGACATTCG 990
Query 1074 CTGAGGGCTTATGCTTCAATGTTATATCTCAAAAAGTTCAAAAACTTCAAAATTATAATT 1133
|| ||||| || ||| ||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 991 CTAAGGGCCTACATTTCCATGCTATATCTCAAGAAGTTCAAAAACTTCAAAATTATTCTT 1050
Query 1134 CGGGGAATCCCTGTGGAGCAGTTCAACATTGCTGATGGATTCAGATTTCCCGAGATTATT 1193
|||||||||||||||||||| |||||||||||||||| ||||||| ||| |||| || |
Sbjct 1051 CGGGGAATCCCTGTGGAGCAATTCAACATTGCTGATGAATTCAGACATCCTGAGA-TAAT 1109
Query 1194 AA-GTACAAGCCCCATA-CAGCTACAACGGAACAAGCTTCCACTGAAATCAAAATTGGAT 1251
|| |||||| ||||| | ||||| ||| |||| | ||| |||||| ||| ||| ||||||
Sbjct 1110 AATGTACAAACCCCA-AGCAGCTGCAATGGAATATGCTGCCACTGGAATTAAAGTTGGAT 1168
Query 1252 TTGTAAAGGAGGCACCTAAGCTTGCAATCTGCGGTTTCAATGTGTATCACAAAAACCGTC 1311
| | |||||||| ||||| ||| |||| || ||||||||||| ||||||||||||||||
Sbjct 1169 TCATCAAGGAGGCGCCTAAACTTCCAATTTGTGGTTTCAATGTCTATCACAAAAACCGTC 1228
Query 1312 TCATCCGGCCTTTCTGGAAGGTCACTATGGGAGGGGA-C-TCGACAGGCCACGGTGTTGT 1369
|||||||||| |||||||||||| | | ||| ||| | ||| |||| | ||||||||
Sbjct 1229 TCATCCGGCCATTCTGGAAGGTCGTTCT-GGA-AGGATCAACGAGAGGCAATGGTGTTGT 1286
Query 1370 GGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAAAGGTC 1429
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1287 GGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAGAGATC 1346
Query 1430 TTCTCTATTTCAGCGGCTGGAGGCGAGGTTGAAAAAGATTGTCTAT-AGTTACTGGTATA 1488
||||||||||| ||||||||||| |||| |||||| |||| ||| | | ||||||| | |
Sbjct 1347 TTCTCTATTTCTGCGGCTGGAGGGGAGGCTGAAAAGGATTATCTCTGA-TTACTGGCAAA 1405
Query 1489 GCCACTGCCACCTTTTAGGATACCATAAATA-TCAAATGCCTGCAGATAAGTCGAAAAAG 1547
||||||||||| |||| |||||||| || | |||||| |||||||||| |||||||| |
Sbjct 1406 GCCACTGCCACGTTTTCGGATACCA-AACTGGTCAAATCCCTGCAGATAGGTCGAAAAGG 1464
Query 1548 ATAGCAATACCTGATCAACCTCCTACTATCAGTACAGTCAATCCTTCGCCTTTGCCTTCT 1607
|||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1465 ATAGCAATACCTGATCAACCGCCTACTGTCAGTACATTCAATCCTTCGCCTTTGCCTTCT 1524
Query 1608 GATAAAATTAGTCAAGGTGGCCCTATAATACGTGAAATCAATCTTAGTAACGCCACCTCA 1667
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1525 GATAAAATTAGTCAAGGCGGTCCTATAATACGTGAAATCAATCTTAGTAACGCCACTTCA 1584
Query 1668 AGCCGTACAGTTGCTTTTGCTTCGCCACATTTGAGAAATTCCACTGGTTTAAGAAGTAAC 1727
||||||||||||||| |||| | || ||||||||||||||||| |||||||||||||||
Sbjct 1585 AGCCGTACAGTTGCTGTTGCAGCACCGCATTTGAGAAATTCCACGGGTTTAAGAAGTAAC 1644
Query 1728 TTTCAACCCGTGCAGCTCAACCCACAACCTACAGCTGCCGATACTGGAAACAACCTCGAT 1787
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1645 TTCCAACCCGTGCAGCTCAACCCACAACCTGCAGCTGCCGATACTGGAAACAACATCGTT 1704
Query 1788 GGCAAGTCAGCGGGTGAGATACGCCAAGAGAACTTACAACTCTTCATGAGGTGCGAGGAA 1847
||||||||||| | ||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1705 GGCAAGTCAGCTGATGAGATAAGGGAAGAGAACATACAACTCTTCATGAGGTGCGAGGAA 1764
Query 1848 TATATAAAGAAAGAGAATGAAACAGAACAGACGGTGAAGAGCTTAGAAAAAGAACTGGAA 1907
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1765 TATATAAAGAAAGAGAATGAAATAGAACAGACGGTAAAGAGCTTAGAAAAGGAACTGGAA 1824
Query 1908 GAATTTAAAAGTAAATGTGCACACCTTGCTCTGCTCGTGGATGCTAAGAAGAAGGAGATG 1967
||| ||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||
Sbjct 1825 GAAGTTAAAAGTAAATGTGCACAACTTGCTTTGCTTGTGGACGCTAAGAAGAAGGAGATG 1884
Query 1968 CAACAAGCTTAG 1979
||||||| ||||
Sbjct 1885 CAACAAGTTTAG 1896
> Ahg944247 jgi|Araly1|944247|scaffold_700476.1
Length=1989
Score = 2025 bits (1096), Expect = 0.0
Identities = 1591/1822 (87%), Gaps = 66/1822 (4%)
Strand=Plus/Plus
Query 196 CAAGTACAATCGCTGGTGCTGCGACAATGGCTCCTCGAGAGACCTTAGAATGCCGGAGCT 255
||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||| |
Sbjct 156 CAAGTACAATCGCTGATGCTGCGACGGTGGCTCCTCGAGAAACCCTAGAATGCCGGAG-T 214
Query 256 TT-TGGAAGGCGGGAGATTACTTTGTGATACCGAACGTTGTGACTCCTACTGCTCCAGGT 314
|| ||||| || || || |||||| ||| || |||| ||| || || |||||| |||||
Sbjct 215 TTCTGGAAAGCCGGCGAAAACTTTGCGATCCCTAACGGTGTTACCCCAACTGCTTCAGGT 274
Query 315 ATGCTTGAGCATGCTCGAGTTCATCCCAGGTTTCTTCACTCGAATGCTACCTCACACAAA 374
||| |||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 275 ATGGTTGAGCATGCTCGAGTACATCCAAAGTTTCTTCACTCGAATGCTACTTCACACAAA 334
Query 375 TGGGCTTTTGGAGCAATCGCTGAGCTACTTGACAATGCTGTTGACGAGATACAAAATGGT 434
|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 335 TGGGCTTTTGGAGCAATCGCCGAACTGCTTGACAATGCTGTTGACGAGATACAAAATGGC 394
Query 435 GCTACGTTTGTTAAGATTGATAAGATCAATATTGTCAAAGATAATTCCCCAGCTTTAGTT 494
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 395 GCTACGTTTGTTAAGATTGATAAGATCGATATTGTCAAAGATAATTCTCCAGCTTTAGTT 454
Query 495 TTCCAAGATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGC 554
|||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 455 TTCCAAGATGATGGCGGTGGGATGGATCCTGATGGACTCAGAAAATGCATGAGCTTAGGC 514
Query 555 TACTCATCAAAGAAGTCTAATACAACGATTGGACAGTATGGAAATGGTTTCAAGACAAGT 614
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 515 TACTCATCAAAGAAGTCTAATACAACAATTGGACAGTATGGAAATGGTTTCAAGACAAGT 574
Query 615 ACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCCACTCGTGGAGGCACATCT 674
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 575 ACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCAAGTCGTGGAGGCAAATCT 634
Query 675 ACTCAGAGCGTTGG-CATTCTGTCATACACATTCCTTAGAAAAACTGGTCAGGATGATGT 733
|||||||||||||| | ||||||| ||||| ||||| ||||||||| |||||||||||||
Sbjct 635 ACTCAGAGCGTTGGTC-TTCTGTCTTACACGTTCCTCAGAAAAACTAGTCAGGATGATGT 693
Query 734 CACTGTTCCTATGATTGATATTGATATATCCAAGGAGCGACCACAACCAATTATCTATGG 793
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CATTGTTCCTATGATTGATATTGATATATCCAAGGAGCGACCACAACCAATTATCTATGG 753
Query 794 ATCTCCAGAAGATTGGGCTGCCAACCTTGAAATTCTACTCAAATGGTCTCCGTTTTCTAC 853
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 754 ATCTCCAGAAGATTGGGCTGCCAACCTTCAAATTCTACTCAAATGGTCTCCGTTTTCTAC 813
Query 854 AGAGGACGAACTTTTGCAGCAGTTCGAGGACGTTGGAACTCATGGAACAAAAGTAATTAT 913
|||||| ||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 814 AGAGGATGAACTTTGGCAGCAGTTCGTGGAAATTGGAACACATGGAACAAAAGTAATTAT 873
Query 914 ATACAACTTGTGGCTTAATGATGAAGGAATCTATGAGCTGAGTTTTGACGACGACGAG-G 972
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 874 ATACAACTTGTGGCTTAATGATGAAGGAATTTATGAGCTGAGTTTTGACGACGAC-AGTG 932
Query 973 AGGATATCCGGCTCCGAGATGAGAG-TGTGAATGACGGAAAACGGTTGCACCATAAAATA 1031
|||| |||||||||| |||||| || ||| |||| || |||||||||| || |||| ||
Sbjct 933 AGGACATCCGGCTCCAAGATGA-AGGTGTCCATGATGGGAAACGGTTGCCCCCTAAAGTA 991
Query 1032 TTGGAACTGAGATCTCATATTTCATACCACTTACGTTATTCTCTGAGGGCTTATGCTTCA 1091
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 992 TTGGAACTGAGATCTCATATATCATACCAATTACGTTACTCTCTGAGGGCTTACGCTTCA 1051
Query 1092 ATGTTATATCTCAAAAAGTTCAAAAACTTCAAAATTATAATTCGGGGAATCCCTGTGGAG 1151
|||||||||||| | |||||| |||| |||||||||||| | || |||||||||||||||
Sbjct 1052 ATGTTATATCTCGAGAAGTTCGAAAATTTCAAAATTATACTACGAGGAATCCCTGTGGAG 1111
Query 1152 CAGTTCAACATTGCTGATGGATTCAGAT-TTCCCGAGATTATTAAGTACAAGCCCCATAC 1210
||||||||||||||||||| | |||||| |||| ||||||| |||||||||||| |||
Sbjct 1112 CAGTTCAACATTGCTGATGAACTCAGATATTCCA-AGATTATAAAGTACAAGCCCTATAA 1170
Query 1211 AGCTACAACGGAACAAGCTTCCACTGAAATCAAAATTGGATTTGTAAAGGAGGCACCTAA 1270
|||||| | |||||||||| ||||| |||||||| |||||||| ||||||||| |||||
Sbjct 1171 AGCTACTATGGAACAAGCTACCACTAAAATCAAAGTTGGATTTATAAAGGAGGGGCCTAA 1230
Query 1271 GCTTGCAATCTGCGGTTTCAATGTGTATCACAAAAACCGTCTCATCCGGCCTTTCTGGAA 1330
||||||| | || |||| |||||| ||||| |||||||||||||||||| | ||
Sbjct 1231 GCTTGCAGTTTGTGGTTACAATGTTTATCATAAAAACCGTCTCATCCGGG-TA-----AA 1284
Query 1331 GGTCACTATGGGAGGGGACTCGAC-AGGCCACGG-TGTTGTG--GGAGTTCTTGAAGCAA 1386
| | || | |||| | |||| | | | | |||| ||||||||||||||||
Sbjct 1285 GA-C-CTGTAGGAGAG-ACTC-ATTAATCAAAATCTGTTCCCCAGGAGTTCTTGAAGCAA 1340
Query 1387 ACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAAAGGTCTTCTCTATTTCAGCGGC 1446
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1341 ACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAGAGGTCGTCTCTATTTCAGCGGC 1400
Query 1447 TGGAGGCGAGGTTGAAAAAGATTGTCTAT-AGTTACTGGTATAGCCACTG-CCACCTTTT 1504
|||||||||||||||||||||||||| || | ||||||| | ||||| || ||| ||||
Sbjct 1401 TGGAGGCGAGGTTGAAAAAGATTGTCCATGA-TTACTGGCAGAGCCA-TGTCCAAGTTTT 1458
Query 1505 AGGATACCATAAATATCAAA-TGCCTGCA---GAT---AAGTCGAAAAAGATAGCAATAC 1557
|||||| ||| ||| ||| |||||||| | | ||||||||||||||||||||||
Sbjct 1459 TGGATACAATATTTAT-AAAGTGCCTGCACCTGCTGTTAAGTCGAAAAAGATAGCAATAC 1517
Query 1558 CTGATCAACCTCCTACTATCAGTACAGTCAATCCTTCGCCTTTGCCTTCTGATAAAATTA 1617
||||||||| |||||| | | |||| |||||| || |||||||||||||||| ||| |
Sbjct 1518 GTGATCAACCACCTACTGTTAATACATTCAATCATTTACCTTTGCCTTCTGATAGAATCA 1577
Query 1618 GTCAAGGTGGCCCTATAATACGTGAAATCAATCTTAGTAACGCCACCTCAAGCCGTACAG 1677
|||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1578 GTCAAGGTGGTCCGATAATACGTGAAATCAGTCTTAGTAATGCCACTTCAAGCCGTACAG 1637
Query 1678 TTGCTTTTGCTTCGCCACATTTGAGAAATTCCACTGGTTTAAGAAGTAACTTTCAACCCG 1737
||||| |||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |
Sbjct 1638 TTGCTGTTGCAGCGCCACATTTGAGAAATTCCACGGGTCTAAGAAGTAACTTCCAACCAG 1697
Query 1738 TGCAGCTCAACCCACAACCTACAGCTGCCG-A--T-A-----CT-----G--G-A-A--- 1776
||||||||| ||| |||||| ||||| ||| | | | || | | | |
Sbjct 1698 TGCAGCTCAGCCCTCAACCTGCAGCTACCGTAAGTGAAATATCTTCCCAGCTGGATACTG 1757
Query 1777 A---CAACCTCGATGGCAAGTCAGCGGGTGAGATACGCCAAGAGAACTTACAACTCTTCA 1833
| |||||| | ||||| |||||||| ||||||| || |||||||| | ||||||||||
Sbjct 1758 AAAACAACCTTGTTGGCATGTCAGCGGATGAGATAAGCGAAGAGAACATGCAACTCTTCA 1817
Query 1834 TGAGGTGCGAGGAATATATAAAGAAAGAGA-ATGAAACAGAACAGACGGTGAAG-AGCTT 1891
||||||||||||||||| |||||||||| | | |||| |||||| |||| ||| | |||
Sbjct 1818 TGAGGTGCGAGGAATATGTAAAGAAAGAAACA-GAAATGGAACAGGCGGT-AAGTAACTT 1875
Query 1892 AGAAAAAGAACTGGAAGAATTTAAAAGTAAATGTGCAC-ACCTTGCTCTGCTCGTGGATG 1950
|||||| |||||||||||| ||||||||||||||||| || |||| |||||||||||||
Sbjct 1876 AGAAAAGGAACTGGAAGAAACTAAAAGTAAATGTGCACGAC-TTGCACTGCTCGTGGATG 1934
Query 1951 CTAAGAAGAAGGAGATGCAACA 1972
|||||| || ||||||||||||
Sbjct 1935 CTAAGAGGAGGGAGATGCAACA 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81322673075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5