BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36350.1 Length=1401 Score E Sequences producing significant alignments: (Bits) Value Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357 2084 0.0 Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1 1317 0.0 > Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357 Length=1401 Score = 2084 bits (1128), Expect = 0.0 Identities = 1313/1404 (94%), Gaps = 6/1404 (0%) Strand=Plus/Plus Query 1 ATGAGGATGAACAAAATTTTACTTGTTTTTGTGTTTCTAAGCATTGCCACTGTAATCAAT 60 |||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||| Sbjct 1 ATGAGGATGAACAAAATTATACTTGTTCTTGTGTTTCTAAGCATTACCACTGTGATCAAT 60 Query 61 AGTGGAACAACAAGCAACTTTGTCCGCACAGCTCAACCATCAACTGAGATGTCTCTCGAA 120 |||||||||||||||| ||| |||| | ||||||||||||||| |||||| ||||| || Sbjct 61 GGTGGAACAACAAGCAAATTTTTCCGAAAAGCTCAACCATCAACCGAGATGCCTCTCAAA 120 Query 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCGGAACAGGTTCATATCGTCCAAGGAGAT 180 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCTGAACAGGTTCATATCATCCAAGGAGAT 180 Query 181 TACAATGGACGTGGTATAATCATATCGTGGGTGACCCCCTTAAACCTAGCTGGTTCAAAC 240 |||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 181 TACAATGGACGTGGCATGATCATCTCGTGGGTGACACCGTTAAACCTAGCTGGTTCTAAC 240 Query 241 GTGGTTACTTATTGGAAGGCAGTTGA-TGGTGATGTGAAACCGAAAAAGAAGAGAGGTCA 299 || |||||||| |||||||| ||| | || |||||||| || |||||||||||| ||| Sbjct 241 GTTGTTACTTACTGGAAGGCGGTT-AGCGGAGATGTGAAGTCGGAAAAGAAGAGAGCTCA 299 Query 300 TGCCTCTACCTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCACGCCAC 359 |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 300 TGCCTCCACGTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCATGCCAC 359 Query 360 AATTAAAGGACTCGAGTATGATACCAAATACATCTATGAGGTTGGAACTGATGGATCCGT 419 |||||||||||| |||| |||||||| |||||||||||||||||||| |||| |||||| Sbjct 360 CATTAAAGGACTCAAGTACGATACCAAGTACATCTATGAGGTTGGAACAGATGAATCCGT 419 Query 420 TAGACAATTTTCCTTCACTAGTCCTCCAAAGGTTGGACCTGACGTTCCATACACTTTCGG 479 ||| |||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 420 TAGGCAATTTTCTTTCACTACACCTCCAAAGGTTGGACCTGATGTTCCATACACATTCGG 479 Query 480 CATTATTGGTGATCTTGGACAAACTTTA-GCTTCTAACGAGACATTATATCATTACATGT 538 ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 480 CATCATTGGTGATCTTGGACAAAC-TTATGCTTCTAACGAGACATTATATCATTACATGT 538 Query 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATC 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGATCATC 598 Query 599 CAAACCATGATCAGAGAAAGTGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658 ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 599 CAAACCATGATCAAAGGAAGTGGGATTCTTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658 Query 659 ACCAAACCTTCATCTATGCTGCCGGGAATCACGAAATTGATTTTGTCCCAAACATTGGGG 718 ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 659 ACCAACCCTTCATCTATGCTGCCGGAAATCACGAAATTGATTTTGTCCCAAACATAGGGG 718 Query 719 AGCCTCATGCCTTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGA 778 |||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||| Sbjct 719 AGCCTCATGCCTTCAAGCCCTACACTCACCGTTACCATAACGCCTACAAAGCTTCGAAGA 778 Query 779 GCA-TATCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCACT-TCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837 Query 838 TCTTATTCTGCCTACGGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAG 897 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 838 TCTTATTCTGCTTACGGAAAATACACACCTCAATATGTGTGGCTCGACCAAGAGTTGAAG 897 Query 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAC 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAT 957 Query 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTC 1017 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAATCATGGTTC 1017 Query 1018 GTTAACAGCAAGGTTGATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1018 GTTAACAGCAAAGTCGATTTGGTATTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077 Query 1078 CGTGTCTCCAATATTAAATACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCT 1137 |||||||||||||||||||| || ||||||||||||||||||| |||||||||||| ||| Sbjct 1078 CGTGTCTCCAATATTAAATATAATATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCT 1137 Query 1138 TCTGCTCCAATCTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197 || || || || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TCAGCCCCGATTTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197 Query 1198 TTTACTGATCCGCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TTTACTGATCCTCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257 Query 1258 TTGGAGATTTACAATAGAACTCACGCATACTACACATGGCATAGGAACCAAGACAATGAA 1317 ||| |||||| ||||| ||||||||| | |||||||||||| |||||||||||||||||| Sbjct 1258 TTGCAGATTTTCAATAAAACTCACGCGTTCTACACATGGCACAGGAACCAAGACAATGAA 1317 Query 1318 CCTGTTGCCGCTGATTCAATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGAATTA 1377 ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1318 CCTATTGCAGCTGATTCAATTATGTTGCACAACAGATATTTCTTTCCAGTAGAGGAATTA 1377 Query 1378 GAATCTGGCAACACTAGGGCCTAA 1401 | ||||||||||| |||||||||| Sbjct 1378 GTATCTGGCAACATTAGGGCCTAA 1401 > Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1 Length=1401 Score = 1317 bits (713), Expect = 0.0 Identities = 1164/1381 (84%), Gaps = 34/1381 (2%) Strand=Plus/Plus Query 35 TTC-TAAGCATTGCCACTGTAATCAATAGTGGAACAACAAG-CAACTTTGTCCG-CACAG 91 ||| ||||||| | ||||| |||||| |||||| |||||| || |||||||| || || Sbjct 31 TTCTTAAGCATCACTACTGTGATCAATGGTGGAATAACAAGTGAA-TTTGTCCGCCA-AG 88 Query 92 CTCAACCATCAACTGAGATGTCTCTCGAAACTTTTCCATCTCCGGCTGGTC-ATAATGCT 150 || |||||| | ||||||||||||||| ||||| || ||||| | ||| | | || || Sbjct 89 CTTTACCATCGATTGAGATGTCTCTCGATACTTTCCCTTCTCCTGATGG-CTACAACACT 147 Query 151 CCGGAACAGGTTCATATCGTC-CAAGGAGATTACAATGGACGTGGTATAATCATATCGTG 209 || |||||||||||| | | | |||||||| | |||| | ||| || || | ||||| Sbjct 148 CCTGAACAGGTTCATCT-GACTCAAGGAGACCATGATGGGCATGGCATGATTGTTTCGTG 206 Query 210 GGTGACCCCCTTAAACCTAGCTGGTTCAAACGTGGTTACTTATTGGAAGGC-AGT--TGA 266 ||| || || |||||||| |||||||| ||| | |||||||| |||| || | | || Sbjct 207 GGTCACGCCGTTAAACCTCGCTGGTTCTAACATTGTTACTTACTGGATCGCTACTAATGG 266 Query 267 TGGTGATGTGAAA-CC-GAAAAAGAAGAGAGGTCATGCCTCTACCTCGTCTTACCGATTT 324 | |||| | ||| || | |||| ||||||| ||| || || || || ||| |||| Sbjct 267 TAGTGACAT-AAAGCCAGCAAAA-AAGAGAGCTCACGCTTCCACGAAATCGTACAGATTC 324 Query 325 TATGACTATACTTCTGGTTTTCTTCATCACGCCACAATTAAAGGACTCGAGTATGATACC 384 ||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 325 TATGACTATGCTTCTGGATTTCTGCATCACGCCACCATTAATGGACTCGAGTATGATACC 384 Query 385 AAATACATCTATGAGGTTGGAACTGATGGATCCGTTAGACAATTTTCCTTCACTAGTCCT 444 |||||||||||||||||||| || ||| ||||||||||||||| |||||||||| |||| Sbjct 385 AAATACATCTATGAGGTTGGTACCGATAAATCCGTTAGACAATTCTCCTTCACTACTCCT 444 Query 445 CCAAAGGTTGGACCTGACGTTCCATACACTTTCGGCATTATTGGTGATCTTGGACAAACT 504 |||||| | ||||| || ||||||||||| |||||||| |||||||||||||||||||| Sbjct 445 CCAAAGATCGGACCCGATGTTCCATACACGTTCGGCATCATTGGTGATCTTGGACAAAC- 503 Query 505 TTA-GCTTCTAACGAGACATTATATCATTACATGTCAAACCCTAAAGGCCAAGCTGTTCT 563 ||| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 504 TTATGCTTCAAATGAGACATTGTATCATTACATGTCGAATCCTAAAGGCCAAGCTGTTCT 563 Query 564 -CTTCCCTGGAGACTTATCTTACGCAGATGACCATCCAAACCATGATCAGA-GAAAGTGG 621 || || |||||||| || |||||||| ||||| || || ||||| || | |||||||| Sbjct 564 ATTTGCC-GGAGACTTGTCATACGCAGACGACCACCCGAATCATGACCA-ACGAAAGTGG 621 Query 622 GATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCAAACCTTCATCTATGCTGCC 681 ||| | ||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| Sbjct 622 GATACTTGGGGAAGATTTATGGAGCCTTGCGCTGCTTACCAGCCCTTCATCTTTGCTGCC 681 Query 682 GGGAATCACGAAATTGATTTTGTCCCAAACATTGGGGAGCCTCATGCCTTCAAGCCCTAC 741 || ||||| || |||||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 682 GGAAATCATGAGATTGATTTCGTTCCTAACATAGGTGAGCCTCACGCCTTCAAGCCATAC 741 Query 742 ATTCACCGTTATCATAACGCCTACAAGGCCTCGA-AGAGCA-TATCTCCTCTTTGGTACT 799 | ||||||||| | || || ||||| || || | |||||| | |||||||||||||||| Sbjct 742 ACTCACCGTTACCCCAATGCTTACAAAGCTTC-ACAGAGCACT-TCTCCTCTTTGGTACT 799 Query 800 CTA-TTAGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCCTACGGAAAA 858 | | |||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||| Sbjct 800 C-AGTTAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCCTATGGAAAA 858 Query 859 TACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAAGAGACT 918 ||||| ||||||||| | ||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 859 TACACGCCTCAATACATTTGGCTTGAGCAAGAGCTGAAGAATGTGAACAGAGAAGAGACT 918 Query 919 CCATGGCTT-ATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCATTACAT 977 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 919 CCATGG-TTGATTGTCATGGTTCACTCTCCGTGGTACAACAGTAATAACTACCATTACAT 977 Query 978 GGAAGGTGAGAGCATGAGAGCA-ATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTTGATT 1036 ||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| |||| Sbjct 978 GGAAGGTGAGAGCATGAGA-CTTATGTTTGAGTCGTGGCTCGTTAATAGCAAGGTCGATT 1036 Query 1037 TGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAACGTGTCTCCAATATTAAAT 1096 |||||||||| ||||| || ||| |||||||||||||||||||| |||| |||||||| | Sbjct 1037 TGGTTTTGTCGGGTCATGTTCATGCCTATGAGAGATCCGAACGTATCTCTAATATTAAGT 1096 Query 1097 ACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCTTCTGCTCCAATCTACATCA 1156 |||||||||||||||| ||||||| |||||||||||| | ||||||||| || ||||||| Sbjct 1097 ACAACATCACCAATGGGTTGAGCTCTCCTGTGAAAGATCTTTCTGCTCCTATTTACATCA 1156 Query 1157 CTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGTTTTACTG-ATCCGCAACCG 1215 ||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||| Sbjct 1157 CTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAATAGTTTCG-TGGATCCACAACCG 1215 Query 1216 AGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTTGGAGATTTACAATAGA 1275 || || ||||| |||||||| || ||||||||||| || ||||| |||||| | || || Sbjct 1216 AGTTACTCGGCATATAGAGAGGCGAGTTTTGGTCACGCGGTTTTAGAGATTAAGAACAGG 1275 Query 1276 ACTCACGCATACTACACATGGCATAGGAACCAAGACAATGAACCTGTTGCCGCTGATTCA 1335 |||||||| | |||||||||||||||||||||||||| || ||| |||| || ||||| Sbjct 1276 ACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGCCTATTGCTGCCGATTCT 1335 Query 1336 ATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGAATTAGAATCTGGCAACACTAGG 1395 ||||||||| ||||||| |||||||||| | |||||| ||| || |||||| |||| Sbjct 1336 GTTATGTTGCTTAACAGACATTTCTTTCCGGGGGAGGAAATAGTTTCCAGCAACATTAGG 1395 Query 1396 G 1396 | Sbjct 1396 G 1396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52374086875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5