BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36350.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357 2084 0.0
Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1 1317 0.0
> Ahg328130 jgi|Araly1|328130|fgenesh1_pm.C_scaffold_7000357
Length=1401
Score = 2084 bits (1128), Expect = 0.0
Identities = 1313/1404 (94%), Gaps = 6/1404 (0%)
Strand=Plus/Plus
Query 1 ATGAGGATGAACAAAATTTTACTTGTTTTTGTGTTTCTAAGCATTGCCACTGTAATCAAT 60
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1 ATGAGGATGAACAAAATTATACTTGTTCTTGTGTTTCTAAGCATTACCACTGTGATCAAT 60
Query 61 AGTGGAACAACAAGCAACTTTGTCCGCACAGCTCAACCATCAACTGAGATGTCTCTCGAA 120
|||||||||||||||| ||| |||| | ||||||||||||||| |||||| ||||| ||
Sbjct 61 GGTGGAACAACAAGCAAATTTTTCCGAAAAGCTCAACCATCAACCGAGATGCCTCTCAAA 120
Query 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCGGAACAGGTTCATATCGTCCAAGGAGAT 180
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 121 ACTTTTCCATCTCCGGCTGGTCATAATGCTCCTGAACAGGTTCATATCATCCAAGGAGAT 180
Query 181 TACAATGGACGTGGTATAATCATATCGTGGGTGACCCCCTTAAACCTAGCTGGTTCAAAC 240
|||||||||||||| || ||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 181 TACAATGGACGTGGCATGATCATCTCGTGGGTGACACCGTTAAACCTAGCTGGTTCTAAC 240
Query 241 GTGGTTACTTATTGGAAGGCAGTTGA-TGGTGATGTGAAACCGAAAAAGAAGAGAGGTCA 299
|| |||||||| |||||||| ||| | || |||||||| || |||||||||||| |||
Sbjct 241 GTTGTTACTTACTGGAAGGCGGTT-AGCGGAGATGTGAAGTCGGAAAAGAAGAGAGCTCA 299
Query 300 TGCCTCTACCTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCACGCCAC 359
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGCCTCCACGTCGTCTTACCGATTTTATGACTATACTTCTGGTTTTCTTCATCATGCCAC 359
Query 360 AATTAAAGGACTCGAGTATGATACCAAATACATCTATGAGGTTGGAACTGATGGATCCGT 419
|||||||||||| |||| |||||||| |||||||||||||||||||| |||| ||||||
Sbjct 360 CATTAAAGGACTCAAGTACGATACCAAGTACATCTATGAGGTTGGAACAGATGAATCCGT 419
Query 420 TAGACAATTTTCCTTCACTAGTCCTCCAAAGGTTGGACCTGACGTTCCATACACTTTCGG 479
||| |||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 420 TAGGCAATTTTCTTTCACTACACCTCCAAAGGTTGGACCTGATGTTCCATACACATTCGG 479
Query 480 CATTATTGGTGATCTTGGACAAACTTTA-GCTTCTAACGAGACATTATATCATTACATGT 538
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 480 CATCATTGGTGATCTTGGACAAAC-TTATGCTTCTAACGAGACATTATATCATTACATGT 538
Query 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGACCATC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CAAACCCTAAAGGCCAAGCTGTTCTCTTCCCTGGAGACTTATCTTACGCAGATGATCATC 598
Query 599 CAAACCATGATCAGAGAAAGTGGGATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 CAAACCATGATCAAAGGAAGTGGGATTCTTGGGGAAGATTCGTGGAGCCTTGTGCTGCTT 658
Query 659 ACCAAACCTTCATCTATGCTGCCGGGAATCACGAAATTGATTTTGTCCCAAACATTGGGG 718
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 659 ACCAACCCTTCATCTATGCTGCCGGAAATCACGAAATTGATTTTGTCCCAAACATAGGGG 718
Query 719 AGCCTCATGCCTTCAAGCCCTACATTCACCGTTATCATAACGCCTACAAGGCCTCGAAGA 778
|||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||
Sbjct 719 AGCCTCATGCCTTCAAGCCCTACACTCACCGTTACCATAACGCCTACAAAGCTTCGAAGA 778
Query 779 GCA-TATCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCACT-TCTCCTCTTTGGTACTCTATTAGACGTGCATCTGCTCACATCATCGTCCTCTCC 837
Query 838 TCTTATTCTGCCTACGGAAAATACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAG 897
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 838 TCTTATTCTGCTTACGGAAAATACACACCTCAATATGTGTGGCTCGACCAAGAGTTGAAG 897
Query 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGGTGAACAGAGAAGAGACTCCATGGCTTATTGTCATGGTTCACTCGCCGTGGTACAAT 957
Query 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAGTCGTGGTTC 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 958 AGTAATAACTACCATTACATGGAAGGTGAGAGCATGAGAGCAATGTTTGAATCATGGTTC 1017
Query 1018 GTTAACAGCAAGGTTGATTTGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTAACAGCAAAGTCGATTTGGTATTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAA 1077
Query 1078 CGTGTCTCCAATATTAAATACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCT 1137
|||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||
Sbjct 1078 CGTGTCTCCAATATTAAATATAATATCACCAATGGCTTGAGCTCTCCTGTGAAAGATCCT 1137
Query 1138 TCTGCTCCAATCTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TCAGCCCCGATTTACATCACTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGT 1197
Query 1198 TTTACTGATCCGCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTTACTGATCCTCAACCGAGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTT 1257
Query 1258 TTGGAGATTTACAATAGAACTCACGCATACTACACATGGCATAGGAACCAAGACAATGAA 1317
||| |||||| ||||| ||||||||| | |||||||||||| ||||||||||||||||||
Sbjct 1258 TTGCAGATTTTCAATAAAACTCACGCGTTCTACACATGGCACAGGAACCAAGACAATGAA 1317
Query 1318 CCTGTTGCCGCTGATTCAATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGAATTA 1377
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 CCTATTGCAGCTGATTCAATTATGTTGCACAACAGATATTTCTTTCCAGTAGAGGAATTA 1377
Query 1378 GAATCTGGCAACACTAGGGCCTAA 1401
| ||||||||||| ||||||||||
Sbjct 1378 GTATCTGGCAACATTAGGGCCTAA 1401
> Ahg474799 jgi|Araly1|474799|fgenesh2_kg.1__4753__AT1G56360.1
Length=1401
Score = 1317 bits (713), Expect = 0.0
Identities = 1164/1381 (84%), Gaps = 34/1381 (2%)
Strand=Plus/Plus
Query 35 TTC-TAAGCATTGCCACTGTAATCAATAGTGGAACAACAAG-CAACTTTGTCCG-CACAG 91
||| ||||||| | ||||| |||||| |||||| |||||| || |||||||| || ||
Sbjct 31 TTCTTAAGCATCACTACTGTGATCAATGGTGGAATAACAAGTGAA-TTTGTCCGCCA-AG 88
Query 92 CTCAACCATCAACTGAGATGTCTCTCGAAACTTTTCCATCTCCGGCTGGTC-ATAATGCT 150
|| |||||| | ||||||||||||||| ||||| || ||||| | ||| | | || ||
Sbjct 89 CTTTACCATCGATTGAGATGTCTCTCGATACTTTCCCTTCTCCTGATGG-CTACAACACT 147
Query 151 CCGGAACAGGTTCATATCGTC-CAAGGAGATTACAATGGACGTGGTATAATCATATCGTG 209
|| |||||||||||| | | | |||||||| | |||| | ||| || || | |||||
Sbjct 148 CCTGAACAGGTTCATCT-GACTCAAGGAGACCATGATGGGCATGGCATGATTGTTTCGTG 206
Query 210 GGTGACCCCCTTAAACCTAGCTGGTTCAAACGTGGTTACTTATTGGAAGGC-AGT--TGA 266
||| || || |||||||| |||||||| ||| | |||||||| |||| || | | ||
Sbjct 207 GGTCACGCCGTTAAACCTCGCTGGTTCTAACATTGTTACTTACTGGATCGCTACTAATGG 266
Query 267 TGGTGATGTGAAA-CC-GAAAAAGAAGAGAGGTCATGCCTCTACCTCGTCTTACCGATTT 324
| |||| | ||| || | |||| ||||||| ||| || || || || ||| ||||
Sbjct 267 TAGTGACAT-AAAGCCAGCAAAA-AAGAGAGCTCACGCTTCCACGAAATCGTACAGATTC 324
Query 325 TATGACTATACTTCTGGTTTTCTTCATCACGCCACAATTAAAGGACTCGAGTATGATACC 384
||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 325 TATGACTATGCTTCTGGATTTCTGCATCACGCCACCATTAATGGACTCGAGTATGATACC 384
Query 385 AAATACATCTATGAGGTTGGAACTGATGGATCCGTTAGACAATTTTCCTTCACTAGTCCT 444
|||||||||||||||||||| || ||| ||||||||||||||| |||||||||| ||||
Sbjct 385 AAATACATCTATGAGGTTGGTACCGATAAATCCGTTAGACAATTCTCCTTCACTACTCCT 444
Query 445 CCAAAGGTTGGACCTGACGTTCCATACACTTTCGGCATTATTGGTGATCTTGGACAAACT 504
|||||| | ||||| || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 445 CCAAAGATCGGACCCGATGTTCCATACACGTTCGGCATCATTGGTGATCTTGGACAAAC- 503
Query 505 TTA-GCTTCTAACGAGACATTATATCATTACATGTCAAACCCTAAAGGCCAAGCTGTTCT 563
||| ||||| || |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 504 TTATGCTTCAAATGAGACATTGTATCATTACATGTCGAATCCTAAAGGCCAAGCTGTTCT 563
Query 564 -CTTCCCTGGAGACTTATCTTACGCAGATGACCATCCAAACCATGATCAGA-GAAAGTGG 621
|| || |||||||| || |||||||| ||||| || || ||||| || | ||||||||
Sbjct 564 ATTTGCC-GGAGACTTGTCATACGCAGACGACCACCCGAATCATGACCA-ACGAAAGTGG 621
Query 622 GATTCGTGGGGAAGATTCGTGGAGCCTTGTGCTGCTTACCAAACCTTCATCTATGCTGCC 681
||| | ||||||||||| |||||||||| ||||||||||| ||||||||| |||||||
Sbjct 622 GATACTTGGGGAAGATTTATGGAGCCTTGCGCTGCTTACCAGCCCTTCATCTTTGCTGCC 681
Query 682 GGGAATCACGAAATTGATTTTGTCCCAAACATTGGGGAGCCTCATGCCTTCAAGCCCTAC 741
|| ||||| || |||||||| || || ||||| || |||||||| ||||||||||| |||
Sbjct 682 GGAAATCATGAGATTGATTTCGTTCCTAACATAGGTGAGCCTCACGCCTTCAAGCCATAC 741
Query 742 ATTCACCGTTATCATAACGCCTACAAGGCCTCGA-AGAGCA-TATCTCCTCTTTGGTACT 799
| ||||||||| | || || ||||| || || | |||||| | ||||||||||||||||
Sbjct 742 ACTCACCGTTACCCCAATGCTTACAAAGCTTC-ACAGAGCACT-TCTCCTCTTTGGTACT 799
Query 800 CTA-TTAGACGTGCATCTGCTCACATCATCGTCCTCTCCTCTTATTCTGCCTACGGAAAA 858
| | |||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 800 C-AGTTAGACGTGCTTCTGCTCACATCATCGTCCTCTCTTCTTACTCGGCCTATGGAAAA 858
Query 859 TACACACCTCAATACGTGTGGCTCGAGCAAGAGTTGAAGAAGGTGAACAGAGAAGAGACT 918
||||| ||||||||| | ||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 859 TACACGCCTCAATACATTTGGCTTGAGCAAGAGCTGAAGAATGTGAACAGAGAAGAGACT 918
Query 919 CCATGGCTT-ATTGTCATGGTTCACTCGCCGTGGTACAACAGTAATAACTACCATTACAT 977
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 919 CCATGG-TTGATTGTCATGGTTCACTCTCCGTGGTACAACAGTAATAACTACCATTACAT 977
Query 978 GGAAGGTGAGAGCATGAGAGCA-ATGTTTGAGTCGTGGTTCGTTAACAGCAAGGTTGATT 1036
||||||||||||||||||| | ||||||||||||||| ||||||| |||||||| ||||
Sbjct 978 GGAAGGTGAGAGCATGAGA-CTTATGTTTGAGTCGTGGCTCGTTAATAGCAAGGTCGATT 1036
Query 1037 TGGTTTTGTCTGGTCACGTCCATTCCTATGAGAGATCCGAACGTGTCTCCAATATTAAAT 1096
|||||||||| ||||| || ||| |||||||||||||||||||| |||| |||||||| |
Sbjct 1037 TGGTTTTGTCGGGTCATGTTCATGCCTATGAGAGATCCGAACGTATCTCTAATATTAAGT 1096
Query 1097 ACAACATCACCAATGGCTTGAGCTATCCTGTGAAAGACCCTTCTGCTCCAATCTACATCA 1156
|||||||||||||||| ||||||| |||||||||||| | ||||||||| || |||||||
Sbjct 1097 ACAACATCACCAATGGGTTGAGCTCTCCTGTGAAAGATCTTTCTGCTCCTATTTACATCA 1156
Query 1157 CTATCGGAGATGGAGGAAACATTGAAGGAATCGCAAATAGTTTTACTG-ATCCGCAACCG 1215
||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||
Sbjct 1157 CTATCGGAGATGGAGGAAACATTGAAGGAATTGCAAATAGTTTCG-TGGATCCACAACCG 1215
Query 1216 AGCTATTCGGCGTATAGAGAAGCTAGTTTTGGTCATGCAGTTTTGGAGATTTACAATAGA 1275
|| || ||||| |||||||| || ||||||||||| || ||||| |||||| | || ||
Sbjct 1216 AGTTACTCGGCATATAGAGAGGCGAGTTTTGGTCACGCGGTTTTAGAGATTAAGAACAGG 1275
Query 1276 ACTCACGCATACTACACATGGCATAGGAACCAAGACAATGAACCTGTTGCCGCTGATTCA 1335
|||||||| | |||||||||||||||||||||||||| || ||| |||| || |||||
Sbjct 1276 ACTCACGCGCAGTACACATGGCATAGGAACCAAGACAACGAGCCTATTGCTGCCGATTCT 1335
Query 1336 ATTATGTTGCATAACAGATATTTCTTTCCAGTAGAGGAATTAGAATCTGGCAACACTAGG 1395
||||||||| ||||||| |||||||||| | |||||| ||| || |||||| ||||
Sbjct 1336 GTTATGTTGCTTAACAGACATTTCTTTCCGGGGGAGGAAATAGTTTCCAGCAACATTAGG 1395
Query 1396 G 1396
|
Sbjct 1396 G 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5