BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36380.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490999 jgi|Araly1|490999|fgenesh2_kg.7__432__AT4G36380.1 3188 0.0
> Ahg490999 jgi|Araly1|490999|fgenesh2_kg.7__432__AT4G36380.1
Length=2085
Score = 3188 bits (1726), Expect = 0.0
Identities = 1981/2099 (94%), Gaps = 37/2099 (2%)
Strand=Plus/Plus
Query 7 AAAACCCTTTTAAAATTCTCTATCGATCTCATCACAAATTTTGCTATATCCACAATTCAT 66
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 AAAA-CCTTTTAAAATTCTCTATCGATCTCTTCACAAATTTTGCTATATCTACAATTCAT 59
Query 67 GTGCTTAGGCATATAGTTATTCCCAAGAAA-CCGGTTTAACTGT-TTACGTATGCAACCT 124
|||||||||||||||||||||||||||||| || |||||||| | ||| ||||||| |||
Sbjct 60 GTGCTTAGGCATATAGTTATTCCCAAGAAATCC-GTTTAACT-TCTTATGTATGCATCCT 117
Query 125 CCGGCAAGCGCAGGACTTTTCCGGTCGCCGGAAAATCTCCCTTGGCCTTATAATTACATG 184
|||||||| |||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 118 CCGGCAAGAATAGGACTTTTCATGTCGCCGGAAAATCTCCCTTGGCCTTCTGATTACATG 177
Query 185 GATTATTTGGTCGCTGGTTTCTTGGTTTTGACGGCCGGAATACTTCTCCGTCCATGGCTC 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 GATTATTTGGTCGCTGGTTTCTTGATTTTGACGGCCGGAATACTTCTCCGTCCATGGCTC 237
Query 245 TGGTTACGTCTACGAAACTCGAAAACgaaagatggagatgaagaagaagataatgaggag 304
||||| ||| || |||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 238 TGGTTTCGTATAAGAAATTCGAAAACGAAAGATGGAGATGAAGAAGAAGA-GA--AGGAG 294
Query 305 aagaagaagggaatgatTCCAAACGGAAGCTTAGGCTGGCCGGTGATCGGAGAAACCCTA 364
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 AAGAAGAAGGGAATGATTCCAAAGGGAAGCTTAGGCTGGCCGGTGATCGGAGAAACCCT- 353
Query 365 AAC-TTCATCGCTTGTGGTTATTCTTCTCGGCCTGTTACCTTCATGGACAAACGAAAGTC 423
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 354 AACATTCATCGCTTGTGGTTATTCTTCTCGTCCTGTTACCTTCATGGACAAACGAAAGTC 413
Query 424 TTTATACGGGAAA-GTGTTCAAAACGAACATAATAGGGACACCAATCATAATATCAACCG 482
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 TTTATAC-GGAAAGGTGTTCAAGACGAACATAATAGGGACACCAATCATAATATCAACCG 472
Query 483 ATGCAGAGGTGAATAAAGTGGTGCTCCAAAACCATGGGAACACATTTGTCCCTGCATACC 542
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 473 ATGCAGAGGTTAATAAAGTGGTGCTCCAAAATCATGGGAACACATTTGTCCCTGCATACC 532
Query 543 CTAAATCAATTACGGAACTACTTGGAGAAAACTCTATTCTCAGCATCAATGGACCTCATC 602
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 533 CTAAATCAATCACTGAACTACTTGGAGAAAACTCTATTCTCAGCATCAATGGACCTCACC 592
Query 603 AAAAAAGGCTTCACACGCTCATTGGCGCGTTCCTCAGATCTCCTCACCTCAAAGACCGGA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAAAAAGGCTTCACACGCTCATTGGCGCGTTCCTCAGATCTCCTCACCTCAAAGACCGGA 652
Query 663 TCACTCGAGACATTGAGGCCTCGGTTGTTCTCACTTTGGCGTCTTGGGCTCAACTTCCAT 722
||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
Sbjct 653 TCACTCGAGACATTGAGGCCTCGGTTGGTATCACTTTGGCTTCTTGGGCTCAACTTCCCT 712
Query 723 TGGTTCATGTTCAGGATGAGATCAAAAAGATGACGTTTGAGATATTAGTAAAAGTGTTGA 782
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGGTTCATGTTCAAGATGAGGTCAAAAAGATGACGTTTGAGATATTAGTAAAAGTGTTGA 772
Query 783 TGAGCACATCTCCTGGTGAAGATATGAACATTCTCAAACTTGAGTTCGAAGAATTCATCA 842
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 773 TGAGCACATCTCCTGGTGAAGATTTGGACATTCTCAAACTTGAGTTCGAAGAATTCATCA 832
Query 843 AAGGTTTGATTTGTA-TCCCAATCAAATTCCCTGGCACTAGACTCTACAAATCCTTAAAG 901
| ||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 833 AGGGTTTGATTTGTATTCCC-ATCAAATTCCCTGGCACTAGACTCTATAAATCCCTAAAG 891
Query 902 GCGAAAGAGAGGTTAATAAAGATGGTAAAAAAGGTTGTGGAGGAGAGACAAGTGGCGATG 961
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 892 GCGAAAGAGAGGTTAATAAAGATGGTAAAAAAGGTTGTGGAAGAGAGACAAGTGGCAACG 951
Query 962 ACAACGACGTCTCCGGCAAATGACGTGGTGGACGTACTTCT-A-AGA-------GACGGT 1012
||||||| |||||||| ||||||||||||||||| ||||| | ||| ||||||
Sbjct 952 ACAACGAAGTCTCCGGTGAATGACGTGGTGGACGTGCTTCTAAGAGACGGTTGTGACGGT 1011
Query 1013 GGTGATTCAGAGAAGCAATCTCAACCGTCAGATTTCGTCAGCGGAAAGATCGTAGAGATG 1072
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1012 GGTGATTCAGAGAAGCAATCTCAGCCGTCGGATTTCGTCAGCGGAAAGATCGTAGAGATG 1071
Query 1073 ATGATACCCGGAGAGGAAACAATGCCAACGGCGATGACCTTGGCTGTCAAATTCTTAAGT 1132
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1072 ATGATACCCGGAGAGGAAACAATGCCAACGGCGATGACATTGGCTGTCAAATTCCTAAGT 1131
Query 1133 GACAACCCCGTCGCTCTAGCCAAACTCGTGGAGGAGAATATGGAGATGAAGAGGCGTAAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GACAACCCCGTCGCTCTAGCCAAACTCGTGGAGGAGAATATGGAGATGAAGAGGCGTAAA 1191
Query 1193 TTGGAATTGGGAGAAGAATACAAGTGGACCGATTATATGTCTCTCTCTTTTACTCAAAAT 1252
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1192 TTGGAGTTGGGAGAAGAATATAAGTGGACCGATTACATGTCTCTCTCTTTTACTCAAAAT 1251
Query 1253 GTGATAAACGAAACGCTTAGAATGGCTAACATTATTAACGGGGTGTGGAGGAAAGCTCTC 1312
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GTGATAAACGAAACACTGAGAATGGCTAACATTATTAACGGGGTGTGGAGGAAAGCTCTC 1311
Query 1313 AAGGATGTAGAAATTAAAGGTTACTTAATACCGAAAGGATGGTGTGTATTGGCATCATTC 1372
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1312 AAAGATGTAGAAATTAAAGGTTACTTAATACCAAAAGGATGGTGTGTATTGGCATCATTC 1371
Query 1373 ATATCGGTTCACATGGATGAAGACATTTATGATAATCCCTATCAATTCGATCCGTGGAGA 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATATCGGTTCACATGGATGAAGACATTTATGATAATCCCTATCAATTCGATCCGTGGAGA 1431
Query 1433 TGGGACAGAATTAATGGATCGGCAAACAGCAGTATTTGCTTCACACCCTTTGGTGGTGGG 1492
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1432 TGGGACAGGATTAATGGATCGGCAAACAGTAGTATTTGCTTCACACCCTTTGGTGGTGGG 1491
Query 1493 CAAAGGCTATGTCCTGGTTTAGAGCTGTCGAAGCTCGAAATATCCATCTTTCTTCACCAC 1552
|||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1492 CAAAGGTTATGTCCTGGTTTAGAACTATCGAAGCTCGAAATATCCATTTTTCTTCACCAC 1551
Query 1553 CTTGTAACCCGGTACAGTTGGACGGCTGAGGAAGACGAGATAGTGTCATTTCCGACTGTG 1612
|| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1552 CTCGTAACCCGATACAGTTGGACGGCTGAGAAAGACGAGATCGTGTCATTTCCGACTGTG 1611
Query 1613 AAGATGAAGCGGAGGCTCCCGATCCGAGTGGCTACTGTAGATGATAGTGCTTCTCCGATC 1672
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||
Sbjct 1612 AAGATGAAGCGGAGGCTCCCGATCCGTGTGGCTACTGT---TGATAGTGCCTCTCGGATC 1668
Query 1673 TCACTTGAAGATCATTAATAGATCATTTCAAA-GAACAAAACTGTTTGTGCAAAGAGGAA 1731
|||||||||||||||| ||||||| ||| ||| |||||||||||||||||||| ||||||
Sbjct 1669 TCACTTGAAGATCATTGATAGATCCTTTTAAAAGAACAAAACTGTTTGTGCAA-GAGGAA 1727
Query 1732 GCAGAGAAGTAAACAAATGATCTTATTAACAAATAGTAGAGAAGAGAAGCAAACAAGATT 1791
|||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1728 GCAGAGAAGTAACCAAATTATCTTATAAAAAAATAGTAGAGAAGAGAAGCAAACAAGATT 1787
Query 1792 GGTGGGTAAGACAGAAAGAGCCATACGTACAGCTAGTGATGGCTCAAAGATGAGAGATTC 1851
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GGTGGGTAAGGCAGAAAGAACCATACGTACAGCTAGTGATGGCTCAAAGATGAGAGATTC 1847
Query 1852 TAATTATA-Att-ttttttGTTTGTCATGTCAAATTATAAGCGTTGGTTAGGTTGTCCCT 1909
|||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1848 TAATTATATATTATTTTTT-TTTGTCATGTCAAATTATAAGCGTTGGTTAGGGTGTCCCT 1906
Query 1910 TTCTCTTTTATTTATCGTACCAAACGCAAGTTGAgatatgattccatatatat----gga 1965
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1907 TTCTCTTT-ATTTATCGTACCAAACGCAAGTTGAGATATGATTCCATATATATATATGGA 1965
Query 1966 tgatagatatgtatattaatatataCCTTCTTCtttttttGGCAGCTATTAACATTATGC 2025
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1966 TGATAGATATGTATATTAATATATACCTTCTTCCTTTTT-GGCAGCTATTAACATTATGC 2024
Query 2026 CTATCTCGTCTCTATCTAGCTTTTGTTTTATGCTCGAGAAAATTTAGACGAAAATATAT 2084
| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2025 CCATGTCGTCTCTATCTAGCTTTTGTTTTATGCTCGAGAAATTTTAGACGAAAATATAT 2083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80332326705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5