BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36410.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490995 jgi|Araly1|490995|fgenesh2_kg.7__428__AT4G36410.1 990 0.0
> Ahg490995 jgi|Araly1|490995|fgenesh2_kg.7__428__AT4G36410.1
Length=597
Score = 990 bits (536), Expect = 0.0
Identities = 576/595 (97%), Gaps = 3/595 (1%)
Strand=Plus/Plus
Query 39 TAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGGGTCTGACCAAAATCGCCACG 98
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TAAGCAAAAATGACGAGTTCTTCTGAATCAACTCGCAAGGGTCTGACCAAAATCGCCACG 62
Query 99 AACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCAC 158
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 63 AACCGGTTGCAGAAAGAGTTTATGGAGTGGCAAACCAATCCTCCTGCTGGTTTCAAGCAC 122
Query 159 AGAGTCTCTGATAATCTCCAACGATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTT 218
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AGAGTCTCTGATGATCTCCAACGATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTT 182
Query 219 TACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCT 278
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 183 TATGCCAATGAAACTTACCAACTTCAGGTTGAGTTCCCTGAGCATTATCCTATGGAAGCT 242
Query 279 CCACAGGTTATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCAC 338
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CCACAGGTCATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCAC 302
Query 339 ATTTGTTTAGATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGT 398
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 303 ATTTGTTTGGATGTTTTGTATGACTCGTGGTCACCGGCTATGAGACTAAGTTCGATCTGT 362
Query 399 CTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGCAAAAGCCGAAAGACAATGAC 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGCAAAAGCCGAAAGACAATGAC 422
Query 459 CATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCAT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCAT 482
Query 519 GACGATAAAGTATAACATCTCCTATAATATTGTGATTACAAACGAATTGTA--A-GATCT 575
|||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||
Sbjct 483 GACGATAAAGTATAACATCTCCTATAATATTGTGATTAGAAACAAATTGTATGATGATCT 542
Query 576 CAGGTCGAGTTCTTGATCTGTTGCTATCTTTAAAACAAGAACAGCTTCTTTCTAC 630
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 CAGGTCGAGTTCTTGATCTGTTGCTATCTTTAACACAAGAACAGCTTCTTTCTAC 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5