BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36420.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490994 jgi|Araly1|490994|fgenesh2_kg.7__427__AT4G36420.1 1299 0.0
> Ahg490994 jgi|Araly1|490994|fgenesh2_kg.7__427__AT4G36420.1
Length=871
Score = 1299 bits (703), Expect = 0.0
Identities = 820/876 (94%), Gaps = 10/876 (1%)
Strand=Plus/Plus
Query 4 CTGACATGAATTCTCAACGAAGCTAAGATCAATTCGATAGAGAGTGAAAACTATGAGGAA 63
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 CTGACATGAATTCTCAACGAAGCTAACATCAATTCGATAGAGAGTG-AAACTATGAGGAA 59
Query 64 TCTGCGAATCATCTCCTCTCACTTCTCACGAGTTTTGAAATCCACCGAGACACGCTCAAG 123
||||||||||||||||||||| |||||||||||||| ||||||| |||||||| | ||||
Sbjct 60 TCTGCGAATCATCTCCTCTCATTTCTCACGAGTTTTCAAATCCATCGAGACACACCCAAG 119
Query 124 TTCCGTTCAATTATTCACGATCCAATCTCGGAGCTACTCATCTCCGGCGACGCAATCGGA 183
||| ||| || ||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct 120 TTCTAATCATTTGTTCTCGATCCAATCTCGGAGCTACTCGTCGCCGGCGACGCAATCGGA 179
Query 184 GAACGTGTCCAAAATCGTCAATGAGCTATCGAATCTCACTCTTTTGGAAACAATGGATCT 243
|||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 GAACGTCTCCAAAATCGTAAATGAGCTCTCGAATCTCACTCTCTTGGAAACAATGGATCT 239
Query 244 TACTGAGATCCTTAGGCAGAAGCTAAACATCAGTGAATTGCCTGTGATGGCGGCGATGAT 303
||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 240 TACTGAGATCCTTAGACAGAAGCTAGATATCAGTGAGTTGCCTGTGATGGCGGCGATGAT 299
Query 304 GCCAGGGATGTCATTACCGGGATCTGGAGCTAGTAAATCCGCCGGCGGAGAAGGGAAAGA 363
||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 300 GCCAGGGATGTCATTCCCGGGATCTGGAGCCGGAAAATCCGCCGGCGGAGAAGGGAAAGA 359
Query 364 GAAGAAGAAGGAAGCAAAGACTGCGTTTGATGTGATGCTTCAAGCGTACGATGCAGTGTC 423
||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 360 GAAGAAGAAAGAAGCAAAGACTGCGTTTGATGTGATGCTTCAAGCTTATGAAGCAGTGTC 419
Query 424 GAAGATAAAGGTGATTAAAGAAGTGAGAACGATTACGGCA-TTGGGGTTGAAGGAAGCGA 482
|||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 420 GAAGATCAAGGTGATTAAAGAAGTGAGAACGATTACGG-ATTTGGGGTTGAAGGAAGCTA 478
Query 483 AAGATTTGGTGGAGAAAGCTCCAACATTGTTGAAGAAAGGAGTTAGTAAGGAAGAAGCAG 542
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 AGGATTTGGTGGAGAAAGCTCCAACCTTGTTGAAGAAAGGAGTTAGTAAGGAAGAAGCAG 538
Query 543 AGAAGATCATTGAGAAGTTGAAGGCTGTTGGAGCTAAAGTTGCTATGGAGTGACCATTTT 602
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 AGAAGATAATTGAGAAATTGAAGGCTGTTGGAGCTAAAGTTGCTATGGAGTGACCATTGT 598
Query 603 TAGGTGTTATTAAAATGGAGCATGAGCAAGAACAAATGAAGCTTCTGCTGAGTAGTCCTT 662
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 TAGGTGTTACTAAAATGGAGCATGAGCAGGAACAAATGAAGCTTCTGCTGAGTAGTCCTT 658
Query 663 CCTAGTGTTTATTACAAATGTAAGATGTGATGGAAAGTCATCAGCAGCTCTTTTCTTTAG 722
| || |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 CGTATTGTTTATTACAATTGTAAGATGTCATGGAAAGTCATCAGCAGCTCTTTTCTTTAG 718
Query 723 AGATAGAAACAGATTTTTGTCTTCTATCAAATATACACGAAGGCTTGTTAGAAGCAA-AG 781
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 719 AGGTAGAAACAGATTTTTGTCTTCAATCAAATATACACGAAGGCTTGTTAGAAGCAACA- 777
Query 782 TTCTCTCTTCTTTGGATCAATCATTCTCTCAGTTCTTGGTTTGTACTAACAGTTG---AT 838
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 778 TTCTCT-T-CTTTGGATCAATCATTCTCTCAGTTCGTGGTTTGTACTAACAGTTGTTGAT 835
Query 839 GATTTCTTTCATATAATAATGAATCATGTTATTTCC 874
||||||||||||||||||||||||||||||||||||
Sbjct 836 GATTTCTTTCATATAATAATGAATCATGTTATTTCC 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5