BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36440.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888419 jgi|Araly1|888419|Al_scaffold_0007_405 1443 0.0
Ahg894618 jgi|Araly1|894618|Al_scaffold_0006_2614 361 1e-98
> Ahg888419 jgi|Araly1|888419|Al_scaffold_0007_405
Length=1218
Score = 1443 bits (781), Expect = 0.0
Identities = 850/883 (96%), Gaps = 5/883 (1%)
Strand=Plus/Plus
Query 438 AGTTATGACAAACTTGGACGTACAGCACAGGTTAATATTATTTGTGGGAACTGTAGTGAT 497
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 340 AGTTATGACAAACTTGGACGTACAGCACAGGTCAATATTATTTGTGGGAACTGTAGCGAT 399
Query 498 GGACGGTGTAAAGGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGTAGA 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 400 GGACGGTGTAAAGGTGGACTTGGATGCATATGTAGTGTCACCCAAGATTCAACTTGCAGA 459
Query 558 GTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGTCCGCGGGTGTTTAAGGGATTT 617
|||||||||||||||||||||||||||||||||||||| || | |||||| ||||| |||
Sbjct 460 GTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGCCCTCTGGTGTTCAAGGG-TTT 518
Query 618 -ACAGTCGGTTTGCATCCTCGCTCATGGGAAATTATCTATAATGGGATGACACAGTTTGG 676
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 519 CACAGTCGGTTTGCATCCTCGCTCATGGGAAATAATTTATAATGGGATGACGCAGTTTGG 578
Query 677 ATTTGATAAGCCCCGTCGTGAGTTTAGCTTCAAGACCGAGCAGACTCATCTCACTCTCTA 736
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 579 ATTTGATAAACCTCGTCGTGAGTTTAGCTTCAAGACCGAGCAGACTCATCTTACTCTCTA 638
Query 737 TATGACTGCAATTGCTTCTCTTTCAACATTGGTAGGGAAGCCTATCATCAAGGTTTCCCC 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 639 TATGACTGCAATTGCTTCTCTTTCAACATTGGTAGGGAAGCCTATCATCAAGGTTTTCCC 698
Query 797 AGAGAATGGTCTTGATGTTAAGATAGCTGGTTCTTCCTTGACTGGGAATCATCCAACAAC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AGAGAATGGTCTTGATGTTAAGATAGCTGGTTCTTCCTTGACTGGGAATCATCCAACAAC 758
Query 857 TTTATCACCGTCAACTTTAGTACTGGATTGGAATTGTGAGAAATCTCGGCGAACTCCATA 916
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 759 TTTATCACCTTCAACTTTAGTACTAGATTGGAATTGTGAGAAATCTCGGCGAACTCCATA 818
Query 917 TGAAGTCAATGTCACCATCCCAGTGGATGGTTATGATCCTGTTCAGTTTTTCCTTACAAA 976
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 819 TGAAGTCAATGTCACCATCCCAGTGGATGGTTATGATCCTGTTCAGTTTTACCTCACAAA 878
Query 977 ACTCTGCGAATACAATCAAGGTAACGAAGGAGGATCAGCGAAAGGATGGGCTATATTTGG 1036
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 879 ACTCTGCGAATACAACCAAGGTAATGAAGGAGGATCAGCGAAAGGATGGGCTATATTTGG 938
Query 1037 AGTTTTTTCCTGCGTATTCCTCGTTGCATCTGCACTTTTCTGCTGTGGGGGCTTTATTTA 1096
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 939 AGTTTTTTCCTGTGTATTCCTCGTCGCATCTGCACTTTTCTGCTGTGGAGGCTTTATTTA 998
Query 1097 TAAAACAAGAGTAGAGCGTGTGCGTGGAACTGATGCATTGCCGGGGATGTCACTTCTATC 1156
||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 999 CAAAACAAGAGTAGAGCGAGTGCGTGGAATTGATGCATTACCGGGGATGTCACTTCTATC 1058
Query 1157 GGGCTTACTAGAAACTGTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAA 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GGGCTTACTAGAAACTGTGAGTGGAAGTGGACAAAGCTACTCAAGAACTGAAGACATCAA 1118
Query 1217 CAATGCTTTTGCCAATGAAGTCTCATGGGACCGCTCTTCCGCATCTTCTACTCAAGCGAC 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1119 CAATGCTTTTGCCAATGAAGTCTCATGGGACCGCTCTTCCGCATCTTCTACTCCAGCGAC 1178
Query 1277 AACAACACAGAGACCAAGTGAAAGAACATATGGTGCGATCTAA 1319
|||| || ||||||||||||||||||||||||||||||||||
Sbjct 1179 AACA-CA--GAGACCAAGTGAAAGAACATATGGTGCGATCTAA 1218
Score = 483 bits (261), Expect = 2e-135
Identities = 289/303 (95%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 135 ATGCAGATACCATCAAGAGAGCATAGTTTCATTCTATTTCTCTTCATATCTGCTTTTGTA 194
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCAGATACCATCAAGAGACCACAGTTTCATTCTATTTCTCTTCATCTCTGCTTTTGTA 60
Query 195 ATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAATTCAAGT 254
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATTGGTGCTGCGTCTGTACCTGTCCCTGATTCTAATTGCTACGCTCTTGACAATTCAAGT 120
Query 255 CGTCTTGTCGATTTTAGCAGCTGGATCGGTCATCCATTTGAATATGATGGCAAGGAATTT 314
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 CGTCTTGTCGATTTCAGCAGCTGGATCGGCCATCCATTTGAATATGATGGGAAGGAATTT 180
Query 315 GATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGGGATATGTTGAT 374
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GATTTGGTGGTTAGATTCTGCAAGGATGTGGAAACAAGAGGGCAGATGGGATATGTTGAT 240
Query 375 TTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGATTTCGTG 434
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 241 TTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGGAAATTTCGATTTTGTT 300
Query 435 CAA 437
|||
Sbjct 301 CAA 303
> Ahg894618 jgi|Araly1|894618|Al_scaffold_0006_2614
Length=615
Score = 361 bits (195), Expect = 1e-98
Identities = 232/250 (93%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 189 TTTGTAATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAAT 248
||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 1 TTTGTAATTGGTGCTACATCTGTACCTGTCCCTGATTTTAATTGCTACGCTCTTGACAAT 60
Query 249 TCAAGTCGTCTTGTCGATTTTAGCAGCTGGATCGGTC-ATCCATTTGAATATGATGGCAA 307
|||||||||||||||||||| |||||||||||||| | | | |||||||||||||||||
Sbjct 61 TCAAGTCGTCTTGTCGATTTCAGCAGCTGGATCGG-CTTTTCTTTTGAATATGATGGCAA 119
Query 308 GGAATTTGATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGGGATA 367
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 120 GGAATTTGATTTGGTGGTTAGATTCTGCAAGGATGTGGAAACAAGAGGGCAGACGGGATA 179
Query 368 TGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGA 427
||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TGTTGATTTCGGACGGTTTCACCCGTTAAGCTACTTTGTTTCTAGTTCTGGAAATTTCGA 239
Query 428 TTTCGTGCAA 437
|||||| |||
Sbjct 240 TTTCGTTCAA 249
Score = 213 bits (115), Expect = 3e-54
Identities = 171/195 (88%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 438 AGTTATGACAAACTTGGACGTACAGCACAGGTTAATATTATTTGTGGGAACTGTAGTGAT 497
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 286 AGTTATGACAAACTTGGACGTACATCACAGGTCAATATTATTTGTGGGAACTGTAGTGAT 345
Query 498 GGACGGTGTAAA---------------GGTGGACTTGGATGCATATGTAGTGTCACCCAA 542
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 346 GGACGGTGTAAAGCTGTGTTTGCTTCTGGTGGACTTGGATGCATATGTAGTGTCACCCAA 405
Query 543 GATTCAACTTGTAGAGTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGTCCGCGG 602
||||||||||| |||||||||| |||||||||||||||||||||||||||||| || | |
Sbjct 406 GATTCAACTTGCAGAGTTACTGACGACTTGGCTATTCCATGTGAGAAACCTGGCCCTCTG 465
Query 603 GTGTTTAAGGGATTT 617
||||| ||||| |||
Sbjct 466 GTGTTCAAGGG-TTT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5