BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36450.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367 1712 0.0
Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785 1046 0.0
Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625 444 7e-124
> Ahg353194 jgi|Araly1|353194|fgenesh1_pg.C_scaffold_7000367
Length=1092
Score = 1712 bits (927), Expect = 0.0
Identities = 1043/1097 (95%), Gaps = 16/1097 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGCTAGTTGATCCTCCAAATGGGATAAGACAAGAAGGGAAACATTACTACACG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGCTAGTTGATCCTCCAAATGGGATTAGACAAGAAGGGAAACATTACTACACG 60
Query 61 ATGTGGCAAACATTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTGGCAAACATTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAGA 120
Query 121 GGAGCTTATGGTGTGGTTTGTTCTTCAATCAACAGCGAAACCAATGAGAGAGTTGCTATT 180
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 121 GGAGCTTATGGTGTTGTTTGTTCTTCAATCAACAGAGAGACCAATGAGAGAGTTGCTATT 180
Query 181 AAGAAGATCCACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACATTGAGAGAGCTT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAGAAGATCCACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACGTTGAGAGAGCTT 240
Query 241 AAGCTTTTAAGGCATGTGAGACACGAAAACGTTATCTCCCTTAAGGATGTTATGCTGCCT 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 241 AAGCTTTTAAGGCATGTGAGACACGAAAACGTTATCGCCCTTAAGGATGTTATGTTGCCT 300
Query 301 ACTCACAGGTACAGCTTCAGAGATGTTTATTTGGTCTATGAGCTTATGGATTCTGATTTG 360
||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTCATAGGTACAGTTTCAAAGATGTTTATTTGGTCTATGAGCTTATGGATTCTGATTTG 360
Query 361 AATCAGATCATCAAATCCTCTCAGTCTCTCTCCGATGATCACTGCAAGTACTTCTTGTTT 420
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AATCAGATCATCAAATCTTCTCAGTCTCTTTCCGATGATCACTGCAAGTACTTCTTGTTT 420
Query 421 CAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCATCGCGATTTAAAG 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCACCGCGATTTAAAG 480
Query 481 CCAGGGAATCT-CTTAGTGAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGCTTGC 539
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCCGGGAATCTTCT-AGTGAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGCTTGC 539
Query 540 GAGAACT--TA-------TGAACAGTTTATGACAGAGTATGTGGTCACTCGTTGGTACCG 590
|||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GAGAACAAGTAGAGGCAATGAACAGTTTATGACAGAGTATGTGGTCACACGTTGGTACCG 599
Query 591 AGCACCTGAGCTTCTTCTCTGTTGTGATAACTACGGAACCTCCATTGATGTTTGGTCGGT 650
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 AGCACCTGAGCTTCTTCTCTGTTGTGACAACTACGGAACCTCCATCGATGTTTGGTCGGT 659
Query 651 AGGATGCATATTCGCAGAGATTCTTGGAAGAAAACCGATATTCCCGGGAACAGAATGTCT 710
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 660 AGGATGCATATTTGCAGAGATTCTTGGAAGAAAACCGATTTTCCCGGGAACAGAATGCCT 719
Query 711 CAACCAACTAAAGCTAATCATAAATGTTGTTGGTAGCCAACAAGACTGGGATCTCCAGTT 770
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAACCAACTGAAGCTAATCATAAATGTTGTTGGTAGCCAACAAGACTGGGATCTCCAGTT 779
Query 771 CATAGATAACCAGAAAGCTAGGAGATTTATAAAGTCTCTTCCTTTCTCAAAGGGTACTCA 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 CATAGATAACCAGAAAGCTAGGAGATTTATAAAGTCTCTTCCTTTCTCAAAGGGCACTCA 839
Query 831 CTTTTCTCATATTTACCCGCACGCAAATCCGCTGGCGATAGATTTGTTACAGAGGATGCT 890
||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 840 CTTTTCTCAGATTTACCCGCATGCGAATCCTCTGGCGATAGATTTGTTACAGAGGATGCT 899
Query 891 TGTGTTTGATCCAACCAAGAGAATATCGGTCAGCGATGCGCTTTTACACCCCTACATGGA 950
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 900 TGTGTTTGATCCAACCAAGAGGATATCGGTCAGCGATGCGCTTTTACATCCCTACATGGC 959
Query 951 GGGACTGTTGGAACCGGAATGTAACCCGTCGGAAAATGTTCCGGTCAGTAGTTTGGAGAT 1010
||| ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||
Sbjct 960 GGGTTTGTTGGAACCGGAATGTAATCCGTCAGAAAATGTTCCGGTCAGT--TT-GGAGAT 1016
Query 1011 AGATGAGAACATGGAAGGAGATATGATCAGGGAGATGATGTGGGAAGAGATGCTTCATTA 1070
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 AGATGAGAATATGGAAGGAGACATGATCAGGGAGATGATGTGGGAAGAGATGCTTTATTA 1076
Query 1071 CCTCCCCCGA-GCTTAA 1086
||| ||| || ||||||
Sbjct 1077 CCTTCCC-GAAGCTTAA 1092
> Ahg319769 jgi|Araly1|319769|fgenesh1_pm.C_scaffold_3002785
Length=1107
Score = 1046 bits (566), Expect = 0.0
Identities = 927/1098 (84%), Gaps = 38/1098 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATGCTAGTTGATCCTCCAAATGGGA-TAAGACAAGAAGGGAAACATTACTACAC 59
||||||||| ||||||| || |||||||||| ||| |||| ||||||||||||||||| |
Sbjct 1 ATGGCGATGTTAGTTGAGCCACCAAATGGGATTAA-ACAACAAGGGAAACATTACTACTC 59
Query 60 GATGTGGCAAACATTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAG 119
|||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 60 AATGTGGCAAACATTGTTCGAAATCGATACTAAGTATGTTCCGATTAAACCCATTGGAAG 119
Query 120 AGGAGCTTATGGTGTGGTTTGTTCTTCAATCAA-CAGCGAAACCAATGAGAGAGTTGCTA 178
||||||||||||||||||||||||||||||||| | | || || ||||||||||||||||
Sbjct 120 AGGAGCTTATGGTGTGGTTTGTTCTTCAATCAATC-GTGAGACTAATGAGAGAGTTGCTA 178
Query 179 TTAAGAAGATCCACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACATTGAGAGAGC 238
|||| ||||| |||||||||||||||||||| | |||||||||||||| ||||| || |
Sbjct 179 TTAAAAAGATTCACAATGTGTTTGAGAATCGTGTTGATGCTTTGAGAACGTTGAGGGAAC 238
Query 239 TTAAGCTT-TTAAGGCATGTGAGACACGAAAACGTTATCTCCCTTAAGGATGTTATGCTG 297
|||||||| ||| |||||||||| ||||| || || ||| | ||||| ||||||||| ||
Sbjct 239 TTAAGCTTCTTA-GGCATGTGAGGCACGAGAATGTGATCGCGCTTAAAGATGTTATGTTG 297
Query 298 CCTACTCACAGGTACAGCTTCAGAGATGTTTATTTGGTCTATGAGCTTATGGATTCTGAT 357
||| || | || | ||| || | ||||||||||||||| |||||||| |||||| |||||
Sbjct 298 CCTGCTAATAGATCCAGTTTTAAAGATGTTTATTTGGTTTATGAGCTCATGGATACTGAT 357
Query 358 -TTGAATCAGATCATCAAATCCTCTCAGTCTCTCTCCGATGATCACTGCAAGTACTTCTT 416
|| | |||||| || ||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 358 CTTCA-TCAGATTATTAAATCCTCTCAGTCTCTTTCTGATGATCACTGCAAATACTTCTT 416
Query 417 GTTTCAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCATCGCGATTT 476
|||||||||||| |||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 417 GTTTCAGTTGCTTAGAGGATTGAAGTATCTTCATTCTGCAAACATCCTTCACCGGGATTT 476
Query 477 AAAGCCAGGGAATCTCTTAGTGAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGCT 536
||||| ||||| |||||||| || || ||||||||||| |||||||||||||| ||| |
Sbjct 477 GAAGCCCGGGAACCTCTTAGTCAACGCGAATTGTGATCTCAAGATTTGTGATTTTGGG-T 535
Query 537 TG-CGAGAACTT---A------TGAACAGTTTATGACAGAGTATGTGGTCACTCGTTGGT 586
|| ||||||| | ||||||||| ||||| |||||||| || || |||||||
Sbjct 536 TGGCGAGAACGAGCCAAGGCAATGAACAGTTCATGACGGAGTATGTTGTTACACGTTGGT 595
Query 587 ACCGAGCACCTGAGCTTCTTCTCTGTTGTGATAACTACGGAACCTCCATTGATGTTTGGT 646
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 596 ACCGAGCACCTGAGCTTCTTCTTTGTTGTGATAACTATGGAACCTCCATTGATGTTTGGT 655
Query 647 CGGTAGGATGCATATTCGCAGAGATTCTTGGAAGAAAACCGATATTCCCGGGAACAGAAT 706
| || |||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||
Sbjct 656 CAGTTGGATGCATATTCGCGGAGATTCTTGGCAGGAAACCGATTTTCCCAGGAACAGAAT 715
Query 707 GTCTCAACCAACTAAAGCTAATCATAAATGTTGTTGGTAGCCAACAAGACTGGGATCTCC 766
| || || || || ||||||||||| ||||||||||||||||||||||| | |||| | |
Sbjct 716 GCCTTAATCAGCTTAAGCTAATCATCAATGTTGTTGGTAGCCAACAAGAATCGGATATTC 775
Query 767 AGTTCATAGATAACCAGAAAGCTAGGAGATTTATAAAGTCTCTTCCTTTCTCAA-AGGGT 825
||||||||| |||| ||||||| | || ||||||||||||||||||| ||||| |||
Sbjct 776 GGTTCATAGACAACCCGAAAGCTCGAAGGTTTATAAAGTCTCTTCCTTACTCAAGAGGA- 834
Query 826 ACTCACTTTTCTC-ATAT-T-TACCCGCACGCAAATCCGCTGGCGATAGATTTGTTACAG 882
||||| | | ||| | || | ||||| || || ||||| || || |||||||||||||||
Sbjct 835 ACTCA-TCT-CTCCA-ATCTCTACCCACAAGCCAATCCTCTAGCTATAGATTTGTTACAG 891
Query 883 AGGATGCTTGTGTTTGATCCAACCAAGAGAATATCGGTCAGCGATGCGCTTTTACACCCC 942
|||||||| ||||| |||||||| || ||||| ||||| | |||||| || ||||||||
Sbjct 892 AGGATGCTCGTGTTCGATCCAACGAAAAGAATCTCGGTAACCGATGCACTCTTACACCCG 951
Query 943 TACATGGAGGGACTGTTGGAACC-GGAATGTAACCCGTCGGAAAATGTTCCGGTCAGTAG 1001
||||||| ||| ||||| || || ||| | || || | | | |||| || || |
Sbjct 952 TACATGGCGGGGCTGTTTGATCCTGGA-TCCAATCCACCTGCACATGTCCCAATC--TC- 1007
Query 1002 TTTGGAGATAGATGAGAACATGGAAGGAGAT-A-TGATCAGGGAGATGATGTGGGAA-GA 1058
|||||| ||||| || |||||||| ||| | | ||||||| |||||||||||| || ||
Sbjct 1008 TTTGGACATAGACGAAAACATGGA-GGA-ACCAATGATCAGAGAGATGATGTGG-AATGA 1064
Query 1059 GATGCTTCATTACCTCCC 1076
||||||| |||||| |||
Sbjct 1065 GATGCTTTATTACCACCC 1082
> Ahg907544 jgi|Araly1|907544|Al_scaffold_0002_625
Length=1131
Score = 444 bits (240), Expect = 7e-124
Identities = 625/805 (78%), Gaps = 49/805 (6%)
Strand=Plus/Plus
Query 13 GTTGATCCTCCAAATGGGATAA-GACAAGAAGGGAAACATTACTACACGATGTGGCAAAC 71
|||||||| |||||||| |||| || | ||||||| ||||||| | | |||||||||||
Sbjct 13 GTTGATCCACCAAATGGAATAAGGA-ATCAAGGGAAGCATTACTTCTCAATGTGGCAAAC 71
Query 72 A-TTATTCGAAATCGACACTAAGTATGTTCCGATTAAGCCGATTGGAAGAGGAGCTTATG 130
| || ||||| || || || || || || || ||||| ||||| || | || || ||||
Sbjct 72 ACTT-TTCGAGATTGATACGAAATACGTGCCTATTAAACCGATAGGCCGTGGCGCGTATG 130
Query 131 GTGTGGTTTGTTCTTCAATCAACAGCGAAACCAATGAGAGAGTTGCTATTAAGAAGATCC 190
|||| ||||| ||||| | ||||| || | ||||||||||| || || ||||||||||
Sbjct 131 GTGTTGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCGATCAAGAAGATCC 190
Query 191 ACAATGTGTTTGAGAATCGCATCGATGCTTTGAGAACA-TTGAGAGAGCTTAAGCTTTTA 249
||||||||||||||||||| || ||||| ||||| || || || || ||||||||||||
Sbjct 191 ACAATGTGTTTGAGAATCGGATTGATGCGTTGAGGACTCTT-AGGGAACTTAAGCTTTTA 249
Query 250 AGGCATGTGAGACACGAAAACGTTATCTCC-CTTAAGGATGTTATGCTGCCTACTCAC-A 307
| ||| | |||| || || || | | | ||||| ||||| ||| || ||| || |
Sbjct 250 CGTCATCTTCGACATGAGAATGTGGT-TGCTCTTAAAGATGTAATGATGGCTAA-CAATA 307
Query 308 GGTACA-GCTTCAGAG-ATGTTTAT-TTGGTCTATGAGCTTATGGATTCTGAT-TTGAAT 363
| | | |||| | || |||| ||| ||| | | ||||||||||||| ||||| || | |
Sbjct 308 AG-AGAAGCTTTA-AGGATGTGTATCTTGTT-TCTGAGCTTATGGATACTGATCTTCA-T 363
Query 364 CAGATCATCAAATCCTCTCA-GT-CTCTCTCCGATGATCACTG-CAAGTACTTCTTGTTT 420
||||| ||||| || ||||| || || | |||| || || ||| |||||||||||
Sbjct 364 CAGATTATCAAGTCGTCTCAAGTGCTAAGTA--ATGACCATTGTCAA-TACTTCTTGTTC 420
Query 421 CAGTTGCTAAGAGGATTGAAGTATCTTCACTCAGCAAACATCCTTCATCGCGATTT-AAA 479
|||||||| | || | |||||| |||| ||||||||||| || ||||| ||| | |||
Sbjct 421 CAGTTGCTTCGTGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGATCTGAAA 480
Query 480 GCCAGGGAATCT-CTTAGTGAATGCTAATTGTGATCT-AAAGATTTGTGATTTCGGGCTT 537
|| || || || ||| |||||||| || || || || |||||| || ||||| |||||
Sbjct 481 CCC-GGTAACCTTCTT-GTGAATGCAAACTGCGA-CTTAAAGATATGCGATTTTGGGCTA 537
Query 538 GCGAG-A-A--CTT-ATGAA----CAGTTTATGACAGAGTATGTGGTCACTCGTTGGTAC 588
||||| | | | | || ||||| ||||| || ||||| || ||| | ||||||
Sbjct 538 GCGAGGACAAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGATGGTAC 597
Query 589 CGAGCACCTGAGCTTCTTCTCTGTTGTGATAACTACGGAACCTCCATTGATGTTTGGTCG 648
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 598 CGAGCACCAGAGCTTCTCCTCTGTTGTGACAACTACGGAACCTCCATTGATGTCTGGTCA 657
Query 649 GTAGGATGCATATTCGCAGAGATTCTTGGAAGAAAACCGATATTCCCGGGAACAGAATGT 708
|| || ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 658 GTCGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACCGATATTCCCTGGAACAGAATGT 717
Query 709 CTCAACCA-ACTAAAGCTAATCATAAATGTTGTTGGTA-GCCA-ACAAGACTGG--GATC 763
|| ||||| | |||| || ||||| || || |||| | |||| | | || || ||||
Sbjct 718 CTAAACCAGATTAAA-CTCATCATTAACATT-TTGGGAAGCCAGAGA-GA--GGAAGATC 772
Query 764 TCCAGTTCATAGATAACCAGAAAGC 788
|| |||| |||||||||| ||||||
Sbjct 773 TCGAGTTTATAGATAACCCGAAAGC 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5