BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36470.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490987 jgi|Araly1|490987|fgenesh2_kg.7__420__AT4G36470.1 1775 0.0
> Ahg490987 jgi|Araly1|490987|fgenesh2_kg.7__420__AT4G36470.1
Length=1160
Score = 1775 bits (961), Expect = 0.0
Identities = 1081/1140 (95%), Gaps = 3/1140 (0%)
Strand=Plus/Plus
Query 35 TTCACTTTTATTGTTATTGTGATGGATAAGAAGGATATGGAGAGAGAGTTTTACATGACA 94
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 24 TTCACTTTTATTGTTATTGAGATGGATAAGAAGGATCTGGAGAGAGAGTTTCACATGACA 83
Query 95 GGAGGAGATGGAAAAACTAGTTATGCCAGAAACTCTTCCCTCCAGAAGAAAGCATCTGAT 154
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 84 GGAGGAGATGGCAAAACTAGTTATGCCAGAAACTCTTCCCTCCAGAAGAAAGCTTCTGAT 143
Query 155 ACGGCAAAGCACATAACACTAGAGACACTTCAACAACTCTACAAAGAGACAAGACCAAAG 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 144 GTGGCAAAGCACATAACACTAGAGACACTTCAACAACTCTACAAAGAGACAAGACCCAAG 203
Query 215 AGTTTAGGAATAGCTGATCTAGGATGTTCTTCAGGACCAAACACTCTCTCCACCATTACA 274
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 204 AGCTTAGGAATAGCTGATCTAGGTTGTTCTTCAGGACCAAACACACTCTCCACCATTAAA 263
Query 275 GACTTCATCAAAACCGTCCAAGTTGCTCACCACCGCGAGATCCCAATCCAGCCCTTACCA 334
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 264 GACTTCATCAAAACCGTCCAAGTTGCTCACCACCGCGAGATCCCAAACCAGCCCTTGCCA 323
Query 335 GAATTCAGCATCTTCCTTAACGATCTCCCTGGAAATGATTTCAACTTCATATTCAAGTCA 394
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 324 GAATTCAGCATCTTCCTTAACGATCTCCCTGGAAATGACTTCAACTCCATATTCAAGTCA 383
Query 395 TTACCAGACTTTCACATAGAGCTCAAGAGAGACAACAACAATGGTGATTGCCCTTCAGTT 454
||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 384 TTACCAGACTTCCACATAGAGCTCAAGAGAGACAACAACAATGGTGATTCCCCCTCAGTT 443
Query 455 TTCATTGCAGCTTACCCTGGGTCATTTTATGGAAGACTCTTCCCTGAAAACACCATCCAC 514
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 444 TTCATTGCAGCTTACCCTGGATCATTCTATGGAAGACTCTTCCCTGAAAAAACCATCCAC 503
Query 515 TTTGTCTATGCCTCTCATAGCTTACACTGGCTTTCCAAGGTTCCTACAGCTTTATATGAC 574
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 504 TTTGTCTATGCCTCTTATAGCTTACACTGGCTTTCCAAGGTTCCTGCAGCTTTATATGAC 563
Query 575 GAGCAAGGCAAGTCCATAAACAAAGGTTGTGTTAGTATCTGCTCCTTAAGCTCTGAAGCT 634
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 564 GAGCAAGGCAAGTCCATAAACAAAGGTTGTGTTAGTATTTGCTCCTCGAGCTCTGAAGCT 623
Query 635 GTTTCCAAAGCTTACTGCAGTCAATTCAAGGAAGATTTCTCCATTTTCCTCCGGTGTAGA 694
|||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 624 GTTTCCGAAGCTTACTACAGTCAGTTCAAGGAAGATTTCTCTATTTTCCTCCGGTGTAGA 683
Query 695 TCAAAAGAGATGGTTTCTGCAGGAAGAATGGTGCTTATTATACTCGGAAGAGAAGGTCCT 754
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 684 TCAAAAGAGATGGTTGCTGCAGGAAGAATGGTGCTCATAATACTCGGAAGAGAAGGTCCT 743
Query 755 GATCATGTCGATAGAGGAAACTCTTTCTTTTGGGAACTTCTCTCAAGATCCATAGCAGAT 814
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 744 GATCATGTCGATAGAGGAAACTCTTTCTTCTGGGAACTTCTCTCAAGATCCATAGCAGAT 803
Query 815 CTTGTTGCACAGGGAGAGACTGAGGAAGAGAAGCTTGATTCTTACGATATGCACTTCTAC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 804 CTTGTTGCACAGGGAGAGACTGAGGAAGAGAAGCTTGATTCTTACGATATGCATTTTTAC 863
Query 875 GCTCCGAGTGCTGATGAGATAGAAGGTGAAGTGGACAAAGAAGGGTCTTTTGAATTAGAG 934
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 864 GCCCCGAGTGCTGATGAGATAGAAGGTGAAGTGAACAAAGAAGGGTCTTTTGAATTAGAG 923
Query 935 AGGTTAGAGATGTTAGAAGTGAAGAAGGACAAAGGGAATACCGAGGGTGATATAAGTTAT 994
||||||||||||||||||||| |||| || |||| ||| | | | |||| ||||||
Sbjct 924 AGGTTAGAGATGTTAGAAGTGGAGAAAGATAAAGAGAA--C-GTGAACGATACCAGTTAT 980
Query 995 GGTAAGGCGGTTGCAAAGACGGTAAGAGCAGTTCAAGAATCAATGCTTGTTCAACACTTT 1054
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 981 GGTAAGGCGGTTGCGAAGACCGTAAGAGCAGTTCAAGAATCAATGCTTGTTCAATACTTT 1040
Query 1055 GGGGAAAAGATTCTTGACAAGCTCTTTGATACATATTGTAGAATGGTTGACGATGAGTTA 1114
||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1041 GGGGAAAAGATTCTTGACAAGCTGTTTGATACATATGGTAGAATGGTTGACGAAGAGTTA 1100
Query 1115 GCTAAGGAAGACATAAGACCCATCACATTTGTTGTTGTCCTAAGAAAGAAGCTCTGAAAC 1174
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1101 GCTAAGGAAGACATAAGACCCATCACATTTGTTCTTGTCCTAAGAAAGAAGCTCTGAAAC 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5