BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36490.1
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944233 jgi|Araly1|944233|scaffold_700462.1 2856 0.0
Ahg931702 jgi|Araly1|931702|scaffold_304159.1 1574 0.0
Ahg944235 jgi|Araly1|944235|scaffold_700464.1 387 2e-106
> Ahg944233 jgi|Araly1|944233|scaffold_700462.1
Length=1672
Score = 2856 bits (1546), Expect = 0.0
Identities = 1631/1673 (97%), Gaps = 1/1673 (0%)
Strand=Plus/Plus
Query 83 TTCCAACTATCTGGCAAAATCATGACTTTGATCCAAGATGCCGAGTTGAAACCAAGGATG 142
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCAACTATCTGGC-AAATCATGACTTTGATCCAAGATGCCGAGTTGAAACCAAGGATG 59
Query 143 GGTTCTTTTAAGAAGAGGAGCTCTTCTAAGAATTTGAGGTATTCAATGACAAAGAGAAGA 202
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 GGTTCTTTTAAGAAGAGGAGCTCCTCTAAGAATTTGAGGTATTCAATGACAAAGAGAAGG 119
Query 203 AGAAGTAGCAAAGTGATGTCTGTGGAGATCATCGAAGATGTGCATGACGCAGAGGAGTTG 262
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 120 AGAAGTAGCAAAGTGATGTCTGCGGAGATCATCGAAGATGTGCATGACGCCGAGGAGTTG 179
Query 263 AAAGCCGTTGATGCTTTTCGCCAATCGCTTATTCTCGATGAGCTACTCCCGGAGAAACAC 322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAAGCCGTTGATGCCTTTCGCCAATCGCTTATTCTCGATGAGCTACTCCCGGAGAAACAC 239
Query 323 GATGACTACCATATGATGCTTAGATTTTTGAAGGCTAGAAAATTTGATCTTGAGAAAACC 382
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GACGACTACCATATGATGCTTAGATTTTTGAAGGCAAGAAAATTTGATCTTGAGAAAACC 299
Query 383 AAACAGATGTGGACTGAAATGCTTAGATGGAGGAAAGAATTTGGTGCTGATACTGTCATG 442
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AAACAGATGTGGACTGAAATGCTTAGATGGAGGAAAGAATTTGGTGCTGACACTGTCATG 359
Query 443 GAGGAGTTTGATTTCAAGGAAATTGATGAAGTGTTGAAATACTACCCTCAAGGACACCAT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGGAGTTTGATTTCAAGGAAATTGATGAAGTGTTGAAATACTACCCTCAAGGACACCAT 419
Query 503 GGAGTTGACAAGGAAGGACGACCTGTGTACATTGAGAGGCTTGGTTTAGTAGATTCTACC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 GGAGTTGACAAGGAAGGACGACCTGTGTACATTGAGAGGCTTGGTTTAGTAGACTCTACC 479
Query 563 AAGTTGATGCAAGTCACAACCATGGATAGGTATGTCAACTACCATGTTATGGAGTTTGAG 622
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 AAGTTGATGCAAGTCACAACCATGGATAGGTATGTTAACTACCATGTTATGGAGTTTGAG 539
Query 623 AGGACCTTCAATGTTAAGTTCCCAGCGTGCTCTATCGCCGCGAAGAAGCACATTGATCAG 682
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 540 AGGACCTTCAATGTTAAGTTCCCAGCGTGCTCTATCGCCGCAAAGAAGCATATTGATCAA 599
Query 683 AGCACAACTATTCTTGATGTCCAAGGAGTGGGACTGAAAAACTTCAACAAGGCTGCTAGA 742
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 600 AGCACAACTATTCTTGATGTCCAAGGAGTGGGACTCAAAAACTTCAACAAGGCTGCAAGA 659
Query 743 GACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAGACCTTGAACAGG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAGACCTTGAACAGG 719
Query 803 ATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACGGTTAAGTCCTTC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACGGTTAAGTCCTTC 779
Query 863 CTTGACCCGAAGACTACAGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAGTTG 922
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTGACCCAAAGACTACAGCAAAGATCCATGTTCTTGGCAACAAGTACCAAAGCAAGTTG 839
Query 923 CTTGAGATAATTGATGAAAGTGAACTTCCTGAGTTTCTTGGAGGTTCATGTACTTGTGCT 982
|||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 840 CTTGAGATCATTGATGATAGTGAACTTCCTGAATTTCTTGGAGGTTCATGTACATGTGCT 899
Query 983 GACAATGGTGGCTGCATGCGCTCTGACAAAGGCCCATGGAAAAATCCAGAGATCATGAAG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GACAATGGTGGCTGCATGCGCTCTGACAAAGGCCCATGGAAAAATCCAGAGATCATGAAG 959
Query 1043 AGAGTTCACAATGGTGATCACAAATGCTCAAAAGGATCCCAAGCTGAAAACTCTGGAGAG 1102
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 960 AGAGTTCACAATGGTGATCACAAATGCTCAAAAGGATCCAAAGCTGAAAACTCTGCAGAG 1019
Query 1103 AAGACCATCCCTGAGGAAGATGACTCTACAACAGAGCCGGCTTCTGAAGAGGAAAAGGCT 1162
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGACCATCCCTGAGGAAAATGCCTCTACAACAGAGCCGGCTTCTGAAGAGGAAAAGGCT 1079
Query 1163 TCAAAAGAGGTCGAAATTGTCCCGGCCGCTCACCCAGCTTGGAACATGCCAGAAGCTCAC 1222
|| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1080 TCCACAGAGGTCGAAATTGTCCCAGCCGCTCACCCAGCTTGGAACATGCCAGAAGCTCAC 1139
Query 1223 AAATTTTCCCTCTCAAAGAAAGAAGTTTACGCCATTCAAGAGGCGTGCAACAACGCTACA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAATTTTCCCTCTCAAAGAAAGAAGTTTACGCCATTCAAGAGGCGTGCAACAACGCTACA 1199
Query 1283 ACAGAAGGAGGGAGGTCACCTATTTTCACAGGGGTCATGGCTCTTGTGATGGGTGTTGTC 1342
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 ACAGAAGGAGGGAGGTCACCCATTTTCACTGGGGTCATGGCTCTTGTGATGGGTGTTGTC 1259
Query 1343 ACTATGATTAAAGTGACTAAAAACGTCCCAAGGAAACTAACCGAGTCAACCTTGTACTCG 1402
|| ||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1260 ACCATGATTAGAGTGACTAAAAACGTCCCAAGGAAACTAACCGAGTCAACCCTATACTCG 1319
Query 1403 AGCCCCGTGTACTGCGATGATGCATCAATGAACAAGAGTGCGATGCAGTCAGAGAAAATG 1462
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGCCCCGTGTACTGCGATGATGCGTCAATGAACAAGAGTGCGATGCAGTCAGAGAAAATG 1379
Query 1463 ACTGTACCTGCAATCTCAGGGGAAGATTTCATGGCCATTATGAAACGAATGGCTGAGTTG 1522
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 ACTGTACCAGCAATCTCAGGGGAAGATTTCATGGCCATCATGAAACGAATGGCTGAGTTG 1439
Query 1523 GAACAGAAAGTGACCGTCTTAAGCGCGCAGCCAACAGTTATGCCTCCGGATAAGGAAGAG 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAACAGAAAGTGACCGTCTTAAGCGCGCAGCCAACAGTTATGCCTCCGGATAAGGAAGAG 1499
Query 1583 ATGCTTAACGCTGCCATTAGCCGGTCCAATGTATTGGAGCAAGAGCTTGCTGCCACCAAG 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATGCTTAACGCTGCCATTAGCCGGTCCAATGTATTGGAGCAAGAGCTTGCTGCCACCAAG 1559
Query 1643 AAGGCTTTGGATGATTCTCTTGGTCGTCAGGAGGAGCTTGTGGCGTACATCGagaaaaag 1702
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1560 AAGGCTTTGGATGATTCTCTTGGTCGTCAGGAGGAGCTCGTGGCGTACATCGAGAAAAAG 1619
Query 1703 aagaagaagaagaagCTGTTCAACTACTGGTGAGAGAAGAACCATGAAGCGAA 1755
|||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1620 AAGAAGAAGAAGAAGCTGTTCAACTACTGGTGAGTGAGGAACCATGAAGGGAA 1672
> Ahg931702 jgi|Araly1|931702|scaffold_304159.1
Length=1708
Score = 1574 bits (852), Expect = 0.0
Identities = 1372/1619 (85%), Gaps = 52/1619 (3%)
Strand=Plus/Plus
Query 134 CCAAGGATGGGTTCTTTTAAGAAGAGGAGCTCTTCTAAGAATTTGAGGTATTCAATGACA 193
|||| | || |||||||||| |||||||| | | || || ||||| | ||| ||||
Sbjct 66 CCAATG-TGTGTTCTTTTAAAAAGAGGAG-T-TGCT-CCAAGTTGAGTTGTTCCTTGACG 121
Query 194 AAG-AGAAGAAGAAGTAGCAAAGTGATGTCTGTGGAGATCATCGAAGATGTGCATGACGC 252
||| || ||||||||||||||||||||||| ||||||||| | || |||| |||||||||
Sbjct 122 AAGAAG-AGAAGAAGTAGCAAAGTGATGTCCGTGGAGATCTTTGAGGATGAGCATGACGC 180
Query 253 AGAGGAGTTGAAA-GCCGTTGATGCTTTTCGCCAATCGCTTATTCTCGATGAGCTACTCC 311
|||||| | ||| || |||||||| || |||||| |||||||||||||||| |||||||
Sbjct 181 GGAGGAGGT-AAAGGCGGTTGATGCATTCCGCCAAGCGCTTATTCTCGATGAACTACTCC 239
Query 312 CGGAGAAACACGATGACTACCATATGATGCTTAGATTTTTGAAGGCTAGAAAATTTGATC 371
|||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CGGACAAACATGATGATTACCATATGATGCTTAGGTTTTTGAAGGCTAGAAAATTTGATC 299
Query 372 TTGAGAAAACCAAACAGATGTGGACTGAAATGCTTAGATGGAGGAAAGAATTTGGTGCTG 431
|||||||||||||||| |||||| |||| ||||| |||||||||| || ||||||||||
Sbjct 300 TTGAGAAAACCAAACAAATGTGGTCTGACATGCTCCGATGGAGGAAGGAGTTTGGTGCTG 359
Query 432 ATACTGTCATGGAGGAGTTTG-ATTTCAAGGAAATTGATGAAGTGTTGAAATACTACCCT 490
| || || |||||||| |||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 360 ACACAGTTATGGAGGATTTTGAATTT-AAGGAAATAGATGAAGTGTTGAAATACTACCCT 418
Query 491 CAAGGACACCATGGAGTTGACAAGGAAGGACGACCTGTGTACATTGAGAGGCTTGGTTTA 550
||||||||||||||||| |||||||||||| |||| |||||||| |||||||| ||| |
Sbjct 419 CAAGGACACCATGGAGTCGACAAGGAAGGAAGACCGGTGTACATCGAGAGGCTAGGTCAA 478
Query 551 GTAGATTCTACCAAGTTGATGCAAGTCACAACCATGGATAGGTATGTCAACTACCATGTT 610
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 479 GTAGACTCTACCAAGTTGATGCAAGTCACAACCATGGATAGATATGTGAACTACCATGTG 538
Query 611 ATGGAGTTTGAGAGGACCTTCAATGTTAAGTTCCCAGCGTGCTCTATCGCCGCGAAGAAG 670
||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 539 ATGGAGTTTGAGAGGACTTTCAATGTTAAGTTCCCAGCATGCTCCATCGCGGCAAAGAAG 598
Query 671 CACATTGATCAGAGCACAACTATTCTTGATGTCCAAGGAGTGGGACTGAAAAACTTCAAC 730
||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 599 CACATTGATCAAAGTACAACAATTCTTGATGTCCAAGGAGTGGGGCTCAAAAACTTCAAC 658
Query 731 AAGGCTGCTAGAGACTTGATTACTCGTCTTCAAAAGGTCGATGGTGACAACTATCCTGAG 790
||||| || || || |||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 659 AAGGCAGCAAGGGATTTGATTACGCGCCTTCAAAAGGTCGATGGCGACAACTATCCAGAG 718
Query 791 ACCTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACG 850
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 ACCTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGGATGTTGTGGAACACG 778
Query 851 GTTAAGTCCTTCCTTGACCCGAAGACTACAGCAAAAATCCATGTTCTTGGCAACAAGTAC 910
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 779 GTTAAGTCTTTTCTTGACCCAAAGACTACAGCAAAGATCCATGTTCTTGGCAACAAGTAC 838
Query 911 CAAAGCAAGTTGCTTGAGATAATTGATGAAAGTGAACTTCCTGAGTTTCTTGGAGGTTCA 970
||||||||||||||||| |||||||||| ||||| || ||||||||||| ||||||||
Sbjct 839 CAAAGCAAGTTGCTTGAAATAATTGATGCTAGTGAGCTGCCTGAGTTTCTGGGAGGTTCT 898
Query 971 TGTACTTGTGCTGACAATGGTGGCTGCATGCGCTCTGACAAAGGCCCATGGAAAAATCCA 1030
|||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||| |
Sbjct 899 TGTACTTGTGCTGACAATGGAGGCTGCATGCGCTCGGACAAAGGGCCATGGAACAATCTA 958
Query 1031 GAGATCATGAAGAGAGTTCACAATGGTGATCACAAATGCTCAAA-AGGATCCCAAGCTGA 1089
|| || |||||||||||| | |||||||| |||||||||||||| || ||| ||||||||
Sbjct 959 GATATTATGAAGAGAGTTAATAATGGTGACCACAAATGCTCAAAGAG-ATCTCAAGCTGA 1017
Query 1090 AAACTCTGG-AGAGAAGACCA--TCCCTGAGGAA------G--A-TGACTCTACAACAGA 1137
||| | | | ||| || |||| ||| |||||| | | ||||||| || ||
Sbjct 1018 AAA-TGTTGCAGATAATACCACATCC--GAGGAAAACATTGGGAATGACTCTGCAGTTGA 1074
Query 1138 GCCGGCTTCTGAAGAG-GAAAAGGC-TT-CAAAAGAG--GTCGAAATTGTCCCGGCCGCT 1192
| ||| ||||| | || || | || | ||| |||| ||| || |||
Sbjct 1075 GGAAGCTCCTGAA-ACTGACCAGTCATTGCTCTCTCCTTGTCAAAAT-GTCGTGGTTGCT 1132
Query 1193 CACCCAGCTTGGAACATGCCAGAAGCTCACAAATTTTCCCTCTCAAAGAAAGAA-GTTTA 1251
|| |||||||||||||| ||||||||||||||||||||||||||||| || | | |||||
Sbjct 1133 CATCCAGCTTGGAACATACCAGAAGCTCACAAATTTTCCCTCTCAAA-AAGGGATGTTTA 1191
Query 1252 CGCCATTCAAGAGGCGTGCAACAACGCTACAACA-GAAGGAGGGAGGTCACCTATTTTCA 1310
||| |||||||| || ||||| | ||||||| | ||| | |||||||| ||||||||||
Sbjct 1192 CGCTATTCAAGAAGCTTGCAA-A--GCTACAA-ATGAAAGTGGGAGGTCTCCTATTTTCA 1247
Query 1311 CAGGGGTCATGGCTCTTGTGATGGGTGTTGTCACTATGATTAAAGTGACTAAAAACGTCC 1370
| || ||||||||| |||| |||||||| ||||| ||||||| ||||||||||||||| |
Sbjct 1248 CTGGAGTCATGGCTTTTGTAATGGGTGTAGTCACCATGATTAGAGTGACTAAAAACGTTC 1307
Query 1371 CAAGGAAACTAACCGAGTCAACCTTGTACTCGAGCCCCGTGTACTGCGATGATG-CATCA 1429
||||||| || |||||||||||| | ||||| || || || |||||||| || | ||
Sbjct 1308 CAAGGAAGCTCACCGAGTCAACCATATACTCTAGTCCAGTTTACTGCGACGAAAAC-TCC 1366
Query 1430 ATGAACAAGAG-TGCGATGCAGTCAGAGAAAATGACTGTACCTGCAATCTCAGGGGAAGA 1488
|||||||| || | |||||||| | | ||||||| | | | | ||||||||||| ||
Sbjct 1367 ATGAACAAAAGCT-CGATGCAGGCGGGGAAAATGGCAACAACAACCATCTCAGGGGATGA 1425
Query 1489 TTTCATGGCCATTATGAAACGAATGGCTGAG-TTGGAACAGAAAGTGACCGTCTTAAGCG 1547
||||||||| | |||||||||||||||||| ||| | |||||||| || |||| || |
Sbjct 1426 TTTCATGGCGGTCATGAAACGAATGGCTGAGCTTG-AGCAGAAAGTCACAATCTTGAGTG 1484
Query 1548 CGCAGCCAACAGTTATGCCTCCGGATAAGGAAGAGATGCTTAACGCTGCCATTAGCCG-G 1606
| ||||||| | ||||||||| || ||||||||||||||||| | |||||||||||| |
Sbjct 1485 CACAGCCAATAACTATGCCTCCTGAAAAGGAAGAGATGCTTAATGATGCCATTAGCCGAG 1544
Query 1607 TCCAATGTATTGGAGCAAGAGCTTGCTGCCACCAAGAAGGCT-TTGGATGATTCTCTTGG 1665
|| || | ||||| ||||| || ||||| |||||||||||| ||| |||||||||||||
Sbjct 1545 -CCGATTTCTTGGAACAAGAACTCGCTGCAACCAAGAAGGCTCTTG-ATGATTCTCTTGG 1602
Query 1666 TCGTCAGGAGGAGCTTGTGGCGTACATCGagaaaaagaagaagaagaagaagCTG-TTC 1723
|| || ||||| |||||||| ||| | |||| |||||||||||||||||||||| |||
Sbjct 1603 CCGACAAGAGGACCTTGTGGCATACGTTGAGAGAAAGAAGAAGAAGAAGAAGCTGGTTC 1661
> Ahg944235 jgi|Araly1|944235|scaffold_700464.1
Length=402
Score = 387 bits (209), Expect = 2e-106
Identities = 231/242 (95%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 941 AGTGAACTTCCTGAGTTTCTTGGAGGTTCATGTACTTGTGCTGACAATGGTGGCTGCATG 1000
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AGTGAACTTCTTGAGTTTCTTGGAGGTTCATGTACCTGTGCTGACAATGGTGGCTGCATG 180
Query 1001 CGCTCTGACAAAGGCCCATGGAAAAATCCAGAGATCATGAAGAGAGTTCACAATGGTGAT 1060
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 CGCTCTGACAAAGGCCCATGGAAAAACCCAGAGATCATGAAGAGGGTTCACAATGGTGAT 240
Query 1061 CACAAATGCTCAAAAGGATCCCAAGCTGAAAACTCTGGAGAGAAGACCATCCCTGAGGAA 1120
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 241 CACAAATGCTCAAAAGGATCCCAAGCTGAAAACTCTGCAGCGAAGACCATCCCTGAGGAA 300
Query 1121 GATGACTCTACAACAGAGCCGGCTTCTGAAGAGGAAAAGGCTTCAAAAGAGGTCGAAATT 1180
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 301 AATGACTCTACAACAGAGACGGCTCCTGAAGAGGAAAAGGCTTCAACAGAGGTTGAAATT 360
Query 1181 GT 1182
||
Sbjct 361 GT 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73018999665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5