BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36500.1
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490986 jgi|Araly1|490986|fgenesh2_kg.7__419__AT4G36500.1 889 0.0
> Ahg490986 jgi|Araly1|490986|fgenesh2_kg.7__419__AT4G36500.1
Length=679
Score = 889 bits (481), Expect = 0.0
Identities = 639/708 (90%), Gaps = 40/708 (6%)
Strand=Plus/Plus
Query 1 ACATTGATCAAActctctctcattccaac--a-aacaacaacaatcatctctttacttct 57
|||||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 1 ACATTGATCAAA--CTCTCTCATTACAACGAACAACAACAACAATCATCTCTTCACTTCT 58
Query 58 ctcttcacatcatctttctTGAATTCTTTATATACACAGTTTAAAGATGCAAATGCTAAG 117
|| ||||||||||| |||||||| || | | | ||||||||||||||||||
Sbjct 59 CTATTCACATCATC-TTCTTGAA----TT-T-T----A----AAAGATGCAAATGCTAAG 103
Query 118 AAGCTTGAGCACGAGGACAAGAAGCCGTCGTGGAGGATACGAGAGAGTGAGTGATGATTC 177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 104 AAGCTTGAGCACGAGGACAAGAAGCCGTCGTGGAGGCTACGAGAGAGTGAGTGATGATTC 163
Query 178 AACTTTCAGTTTACTCGGAGCAAAGCTAAGGAGATCGACGAGTGTTCCTTACTACGCACC 237
|| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 164 AAGTTTTAGTTTTCTCGGAGCAAAGCTAAGAAGATCGACGAGTGTTCCTTACTACGCTCC 223
Query 238 ATCTATAAAGCTTGGAGCTGGTGGTGTTCCGACCATTCTTGAGGAGCTTCCTCGTCAGAA 297
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 224 ATCTATAAAGCTTGGTGCTGGTGGCGTTCCGACCATCCTTGAGGAGCTTCCTCGTCAGAA 283
Query 298 ATCAAAGAAAGTCAAACCAACAGGCAAATTTAGTCACCCAATCTTTAGTCTTTTCTACGG 357
||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 284 ATCCAAGAAAGTTAAACCAACAGGCAAATTTAGCCACCCGATCTTTAGTCTTTTCTACGG 343
Query 358 AAAGAAGAAGAAGTCGACGACGACGAAGCCTGAGTTTTCTAGGTATCTTGAGTATTT-AA 416
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 344 AAAGAAGAAGAAGTCAACCACGACTAAGCCTGAGTTTTCTAGGTATCTTGAGTATTTGAA 403
Query 417 AGGAAGGTGGTATGTGGGATGCCAGAGCTAATGCGCCTGTTATCTATTACAAGTAGATCG 476
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 404 AG-AAGGTGGTATGTGGGATGCCAGAGCTAATGCCCCTGTTATCTATTACAAGTAGATCG 462
Query 477 ATATATGAATTTGTTAAAACAA-AT-AATCAAGAAAGAGAGAG-GGTGATGAAAGTTTTC 533
||||| |||||||||||| || || || |||| |||||||| || | |||||||||||
Sbjct 463 ATATA--AATTTGTTAAAA-AAGATCAAGAAAGAGAGAGAGAGAGG-G-TGAAAGTTTTC 517
Query 534 TTTTATTTGTTTAGTTCAAATCTTCTTCAATTTGTGATGATATTA-T-T-TGTATATATA 590
|||||||||||| ||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 518 TTTTATTTGTTTGGTTCAAATCTTCTTCAATTTGTGATGATATTTGTATATATATATATA 577
Query 591 TTTCAACGATCCAATATTGTTATGTTTTATAAGCATATTACAAGTATTGGAAACAAAATT 650
|||||| |||||||||||||| | | |||||||| ||||||||||||||||| |||||
Sbjct 578 TTTCAATGATCCAATATTGTT-T-T---ATAAGCAT-TTACAAGTATTGGAAACGAAATT 631
Query 651 GTATGCTTTTGAGCACATTTT-GATTGGAAATGATTTTGAGTTTGAAA 697
||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 632 GTATGCTTTTGAGCACATTTTTGATTGGAAATGATTTTGAGTTTCAAA 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5