BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36520.1
Length=4352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328116 jgi|Araly1|328116|fgenesh1_pm.C_scaffold_7000343 2122 0.0
> Ahg328116 jgi|Araly1|328116|fgenesh1_pm.C_scaffold_7000343
Length=4191
Score = 2122 bits (1149), Expect = 0.0
Identities = 1345/1440 (93%), Gaps = 12/1440 (1%)
Strand=Plus/Plus
Query 834 AAGTATTACAGTAGTGAACCTTTTGTTACTGTTTCTGAGATTGGTTTGAAGACTCATCCT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AAGTATTACAGTAGTGAACCTTTTGTTACTGTTTCTGAGATTGGTTTGAAGACTCATCCT 711
Query 894 ACTGGAATACCACCTCCATCGAGAGCAGCTCCTATATTGAAGAGTGATTTTAGAAGTTCG 953
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ACTGGAATACCACCTTCATCGAGAGCAGCTCCTATATTGAAGAGTGATTTTAGAAGTTCG 771
Query 954 GCTTCTAATTCTAAAACCACTGGATCACAAGGATCTGTAGATAGTAGTAGTTCTCCAACG 1013
|||||||||||||||| ||||||||||||||||||| ||||||||| | ||||| ||
Sbjct 772 GCTTCTAATTCTAAAAGTACTGGATCACAAGGATCTGCGGATAGTAGT--T-CTCCACCG 828
Query 1014 TTCTTTGATGTAGAGGTTGATGCTAATTCAGCTGCTGTGAGAGAAGCTATGCTAAAAGCT 1073
||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||
Sbjct 829 TTCTTTGATGTAGAGGTTGATGCAAATTCAGCTGCAGTGAGAGAAGCTATGGTAAAAGCT 888
Query 1074 GAGGCAAAATTAAAAAGTGCAAAAGAGCTGTTAGAAAGGAAGAGGGATGTGGCACGGACC 1133
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 889 GAGGCAAAATTAAAAAGTGCAAAAGAGCTGTTAGAAAGGAAGAGGGATGGGGCACGAACC 948
Query 1134 ACCTCAACGCCATCCTCCACGAAGAATAGAATAAAAGAGGAAGGGAAATCGAGCTATGCA 1193
||| ||| |||| |||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 949 ACCGCAAAGCCAACCTCCACGAAGAATAGAATAGCCGAGGAAGGGAAATCGAGCCATACA 1008
Query 1194 GCTGGTTTGCCAGTTGTTAAGAGTAATATTGATGTAGCAAGAAAGTCTTTGAAGGATAAG 1253
||||||||||| || ||||||| ||||||||||||||| ||||| ||||||| |||||||
Sbjct 1009 GCTGGTTTGCCCGTAGTTAAGACTAATATTGATGTAGCTAGAAATTCTTTGAGGGATAAG 1068
Query 1254 CGTGGAAGCAAGTCTCTGTCTTCTCAAGGGTCAGCAACCTCTGATGGAAATGATGAATGG 1313
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1069 CGTGGAAGCAAGTCTCTGTCTTCTCAAGGGTCAGCAAACTCTGATGGAAATGATGAATGG 1128
Query 1314 AAAGAAGCTAATAATCAATATGTTGAATTGGTGAGAACAGAGCTACCAAGAAATGCTGAT 1373
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAAGAGGCTAAT---CAATTTGTTGAATTGGTGAGAACAGAGCTACCAAGAAATGCTGAT 1185
Query 1374 GAGAACAGTGGTGGAAAAGATGTTTCTATTCCTCTTAATGCTGAGTTTTTCGATCAGGAG 1433
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1186 GAGAGTAGTGGTGGAAAAGATGTTTCTATTCCCCTTAATGCAGAGTTTTTCGATCAGGAG 1245
Query 1434 CTGACATGGGCAGGC-AATGTTGACTGGGAGAAACAACGGAGGAGAGCAAAAGGAGATAG 1492
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1246 CTGACATGGGCAG-CTAATGTTGACTGGGAGAAACAGCGGAGGAGAGCAAAAGGAGATAG 1304
Query 1493 GGAGGATCATGAAGCTAGGAAATTGCCAAAACACTC-TGGAACGAGAAAGTTATCATCTA 1551
|||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||
Sbjct 1305 GGAGGATCATGAAGCTAGGAAATTGCCAAAACAC-CATGGAACGAGAAAGGTAGCATCTA 1363
Query 1552 GGCATAAGAGACATGAGAACAAGCTTGCTGAAAAGGCTCCTGAAGAGCCAAAGATTGAGA 1611
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1364 GGCATAAGAGACATGAGAACAAGCTTGCAGAAAAGGCTCCTGAAGAGCCAAAGAAAGAGA 1423
Query 1612 AATCGAGACATGTTGAGATGGGCAACGATTTACCTGATCATGGTGGGATAGTGAAACACA 1671
|||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1424 AATCGAGACATGTTGAAATGGGCACCAATTTACCTGATCATGGTGGGATAGTGAAACACA 1483
Query 1672 GAAATCTGCTCAAACCAGAAGAAAACAAGCTCTTTACTGAAAAGCCTGCGAAACAAAAGA 1731
|||||||||| | |||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1484 GAAATCTGCTTAGACCACAAGAAAATAAGCTCTTTACTGAAAAGCCTGCAAAACAAAAGA 1543
Query 1732 AGGAATTGCTCTGTGAAGAGAAAACAAAACGCATTCAAAATCAACAGTTGGATaaaaaaa 1791
||||||||| ||||||||||||||||||| |||| ||||||||||| | ||||| || |
Sbjct 1544 AGGAATTGCACTGTGAAGAGAAAACAAAAGGCATACAAAATCAACAATCGGATAGAATAC 1603
Query 1792 CACATCAGAAAGCAGCTGAAACGAACCAGGAATGCGTGTATGATTGGGAACAAAATGCGA 1851
|||||| | |||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1604 CACATCGGCAAGCAGTTGAAAAGAACCAGGAATTTGTGTATGATTGGGAACAAAATGCGA 1663
Query 1852 GAAAGCTCAGGGAAGCTCTTGGTAATGAAAGTACGCTAGAGGTTTCCGTTG-AATTGAAT 1910
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1664 GAAAGCTCAGGGAAGCTCTTGGTAATGAAAGTACGCTAGAGGTTTCC-TTGGAATTGAAT 1722
Query 1911 GGAAATGGTaaaaaaaTGGAAATGCGTAGCCAAAGTGAGACTAAACTGAATGAGCCCTTG 1970
||||||||||||||| ||| |||| || || |||||||||| |||||||||||| |||||
Sbjct 1723 GGAAATGGTAAAAAATTGGGAATGTGTGGCGAAAGTGAGACAAAACTGAATGAGGCCTTG 1782
Query 1971 AAGAGGATGGAGGAGGAAACTAGGATTAAAGAGGCTCGTCTAAGGGAAGAAAATGACAGA 2030
||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||
Sbjct 1783 AAGCGGATGGAGGAGGAAACTAGGACTAAAGAGGCTCGTGTAAAGGAAGAAAATGAGAGA 1842
Query 2031 AGAGAAAGAGTAGCTGTTGAGAAGGCAGAAAATGAGAAAAGACTAAAGGCTGCGTTGGAG 2090
|||||||||| |||| |||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1843 AGAGAAAGAGAAGCTTTTGAGAAGGCAGAAAATGAGAAAAGACTGAAGGCCGCATTGGAG 1902
Query 2091 Caagaagagaaggaaagaaagattaaggaagctcgtgaaaaagcagagaatgaacgaaga 2150
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1903 CAAGAAGAGAAGGAAAGAAAGAGTAAGGAAGCTCGTGAAAAAGCAGAGAATGAACGGAGA 1962
Query 2151 GCTGTTGAGGCTCGTGAAAAGGCAGAACAAGAAAGGAAAATGAAAGAACAACAAGAGTTA 2210
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 GCGGTAGAGGCTCGTGAAAAGGCAGAACAAGAAAGGAAAATGAAAGAACAACAAGAGTTA 2022
Query 2211 GAATTGCAGCTAAAAGAAGCTTTTGAAAAGGAAGAAGAGAACCGTAGAATGAGAGAGGCC 2270
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2023 GAATTGCGGCTAAAAGAAGCTTTTGAAAAGGAAGAAAAGAACCGTAGAATGAGAGAGGCC 2082
Score = 1916 bits (1037), Expect = 0.0
Identities = 1420/1592 (89%), Gaps = 77/1592 (5%)
Strand=Plus/Plus
Query 2441 agaaaatgagaggagagct-aaagaggttcttgagcaggca-gagaatgagaggAAGTTG 2498
||| |||||||||| || | ||||| | || ||||| | ||||| || |||| | ||
Sbjct 2325 AGAGAATGAGAGGA-AGTTGAAAGAAGCCCTCGAGCA-AAAGGAGAAAGAAAGGAGGCTG 2382
Query 2499 AAAGAAGCCCTCGAG-Caaa-aggagaacga-aagaaggctgaaag-agac-acgtgaaa 2553
|||| || | || | ||| ||||||| || ||||| |||||||| || | | |||
Sbjct 2383 AAAG-AG-ACACGTGAAAAAGAGGAGAATGAGAAGAA-GCTGAAAGAAG-CTA-TTGAGC 2437
Query 2554 aagaggagaataagaagaaa--ctgagagaagctattgagctagaagagaaagaaaaaag 2611
||| ||| | ||||| ||| || | ||||||| ||||| | ||||| || | |||
Sbjct 2438 TAGAAGAG-A-AAGAAAAAAGGCTCATAGAAGCTTTTGAGAGGGCAGAGATTGAGAGAAG 2495
Query 2612 actgatagaagcttttg-agagggcagagattga-ga-gaagactgaaagagGATC-TTG 2667
||||| ||| | | ||| | | || ||||| ||| || | || ||| |||| | | |
Sbjct 2496 ACTGAAAGAGGATCTTGAACA-GGAAGAGA-TGAGGATG-AGGCTGCAAGAAG-CCAAGG 2551
Query 2668 AACAG-GAAGAGATGAGGATG-AGGCTGCAAG-AAGCCAAGGAAAGAGAAAGACTACATA 2724
|| || ||||| | || || | | | | ||| ||| || |||||||||||||||||||
Sbjct 2552 AA-AGAGAAGA-AAGA-GAAGAAAG-AG-AAGAAAGAGAA-GAAAGAGAAAGACTACATA 2605
Query 2725 GAGAAAATCAAGAGCATCAGGAAAATGAAAGAAAACAACATGAATATTCAGGAGAAGAAA 2784
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2606 GAGAAAATCAAGAGCATCAGGAAAATGAAAGAAATCAACATGAATATTCAGGAGAAGAAA 2665
Query 2785 GTGACGAGAAAGAAAGAGATGCTTGTGAAATGGAGAAAACCTGTGAAACCACCAAAGAGG 2844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 GTGACGAGAAAGAAAGAGATGCTTGTGAAATGGAGAAAACCTGTGAAACCACCAAAGAGG 2725
Query 2845 CTCATGGAGAGCAATCATCAAATGAAAGTCTTAGCGACACTCTAGAAGAGAATGAGAGTA 2904
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2726 CTCATGGAGAGCAATCATCAAATGAAAGTCTTAGCGACACTCTAGAAGAGGATGAGAGTA 2785
Query 2905 TAGACAACGACGTATC-AGTGAACAAACAAAAGAAAGAAGAAGAAGGGA-CAAGGCAGAG 2962
||||||| || ||| | ||||||||| || || ||||||||| ||| ||||||||||
Sbjct 2786 CAGACAACCACAAATCTA-TGAACAAAC--AA-AACGAAGAAGAA-GGACCAAGGCAGAG 2840
Query 2963 AGAATCTATGTCCGCAGAAACCTGTCCTTGGAAGGTTTTTGAGAAGACCCTCAAAGACGC 3022
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2841 AGAATCTATGTCCGAAGAAACCTGTCCTTGGAAGGTTTTTGAGAAGAACCTCAAAGACGC 2900
Query 3023 CAGCCAAAAGGAAGGAACTAATGAGATGGATGCTGACA-CCAGGTTGTTTGAGAGGAATG 3081
||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 2901 CAGCCAAAAGGAAGGAACTAATGAGCTGGATGCTGA-ATCCAGGTTGTTTGAGAGGAATG 2959
Query 3082 AAGAGACACCACGGCTGGGTGAGAATGGAGGATGTAACCAACAAAATGGAGAATCAG-GT 3140
|||||||||| | ||||||||| |||||||||| |||||||| |||||||| ||| | ||
Sbjct 2960 AAGAGACACCTCAGCTGGGTGAAAATGGAGGATATAACCAACGAAATGGAGTATC-GAGT 3018
Query 3141 GAGGAATCCACATCTGTCACTGAGAATATTATAGGAGGGAAGCTCGAACAGAAGAGTAAA 3200
||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3019 GAGGAGTCCACTTCTGTCACTGAGAATATTATAGGAGGAAAGCTCCAACAGAAGAGTAAA 3078
Query 3201 AATTCTGAAACCTCCAAAGATGCCTCAGTTCTCAAACGAGTCAGTGGGTTGAAAACTGAA 3260
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 3079 AATTCTGAAACCTCCAAAGATGCCTCAGTTCTCAAACGAGACAATGGGTTGAAAACTGAA 3138
Query 3261 GTT-------GA--AGAA-A-GAT-TA---GAAGA-C-----GT------TGTAGGTGTT 3293
||| || |||| | ||| || ||||| | || | |||||||
Sbjct 3139 GTTGAAGAAAGATCAGAAGACGATGTAGGTGAAGACCAAAATGTCAGAAAAGCAGGTGTT 3198
Query 3294 GGTCGTGATCAAAGGAATCCAGAGGAAAGTAAGTCCGCTCCCAAAACATCCTATGGTTTC 3353
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3199 GGTCGTGATCAAAGGAATCCAGAGGAAAGTAAGTCCGCTCCCAAAACATCCTCTGGTTTC 3258
Query 3354 AGAAACCATGAATATAAATTCACCCATCAGCAGGAAAGAGGAAATATCTATGAGACGCAA 3413
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3259 AGAAACCATGAAAATAAATTCACCCATCAGCAGGAAAGAGGAAATATCTATGAGACCCAA 3318
Query 3414 GCAGGTTTAAATCAAGATGCAAAAGTAGAAAGACCATTGCCTTCTCGAGTATCTGTGCAA 3473
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 3319 GCAGGTTTAAATCAAGATGCAAAATTAGAAAGACCATTGCCTTCTCGAGTATCCGTGCAA 3378
Query 3474 CGTgagaaagaagcagagagactaaagagagaaagagacttagagatggagcaattaaga 3533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3379 CGTGAGAAAGAAGCAGAGAGACTAAAGAGAGAAAGAGACTTAGAGATGGAGCAATTAAGA 3438
Query 3534 aaggtagaagaagaaagggagagggaaagagagagggagaaggaTCGAATGGCTTTTGAC 3593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3439 AAGGTAGAAGAAGAAAGGGAGAGGGAAAGAGAGAGGGAGAAGGATCGAATGGCTTTTGAC 3498
Query 3594 CAGAGAGCATTGGCTGATGCACGTGAAAGATTGGAGAAAGCATGTGCTGAGGCCAGAGAG 3653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3499 CAGAGAGCATTGGCTGATGCACGTGAAAGATTGGAGAAAGCATGTGCTGAGGCCAGAGAG 3558
Query 3654 AAGTCTTTGCCTGATAAGTTATCGATGGAGGCTCGACTTAGAGCAGAACGGGCAGCAGTG 3713
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3559 AAGTCTTTGCCTGATAAGTTATCGATGGAGGCAAGACTTAGAGCAGAACGGGCAGCAGTG 3618
Query 3714 GAGAGAGCAACCT-CTGAAGCTCGTGACCGTGCAGCTGAAAAGGCTGCTTTTGAGGCAAG 3772
||||||||||| | ||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 3619 GAGAGAGCAAC-TGCTGAAGCTCGTGAACGTGCAGCTGAAAAGGCTGCCTTTGAGGCAAG 3677
Query 3773 AGAGCGAATGGAAAGATCGGTTTCCGATAAGCAATCTCAGAGTTCAGGTTTCTTTGGTGA 3832
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3678 AGAGCGAATGGAAAGATCGGTTTCCGATAAGCAATGTCAGAGTTCAGGTTTCTTTGGTGA 3737
Query 3833 ACGAATGGAAATATCACTTTCTGATAAGCAATTTCAAAATTCAGTCTCTTTTGGTGCTTC 3892
||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3738 ACGAATGGAAAGATCAGTTTCTGATAAGCAATTTCAAAATTCACTCTCTTTTGGTGCTTC 3797
Query 3893 AAGATATCAAGATTCT-CATGGTACTGAAGGTGAATCGCCTCAAAGGTATACATCAAGAT 3951
|||||||||| ||| | | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 3798 AAGATATCAAAATTTTAC-TGGTACTGAAGGTGAATCGCCTCAAAGGTATACATCGAGAT 3856
Query 3952 TAGAAAGGCATCAAAGAACGGCTGATCGTGTG 3983
| |||||||||| |||||| ||||||||||||
Sbjct 3857 TGGAAAGGCATCGAAGAACAGCTGATCGTGTG 3888
Score = 972 bits (526), Expect = 0.0
Identities = 614/656 (94%), Gaps = 8/656 (1%)
Strand=Plus/Plus
Query 84 ATGGAAAATCTCTCTCATTCTCGGAATCCAAACAGGTCTTCTTCATTACCTAAGAAACCT 143
|||||||||||||||||||||||||||||||| ||| |||||| || |||||||||||
Sbjct 1 ATGGAAAATCTCTCTCATTCTCGGAATCCAAATAGG---TCTTCACTATCTAAGAAACCT 57
Query 144 TACAATGGCAATAACACCACCGGAGGTTTTAGCTACAACTCCGGCAAAACGGCTAATACA 203
||||||||| || | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TACAATGGCGGCAATAACGCCGGAGGTTTTAGCTACAACTCCGGCAAAACGGCTAATACA 117
Query 204 ACCACCACTACTACATACGACGACGTTTTTGGTGGTCCACCTAGGTTCGGAGCTCCGACT 263
|||||||| |||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 118 ACCACCACCACTACATACGACAACGTTTTTGGTGGCCCGCCTAGGTTCGGAGCTCCGACG 177
Query 264 TTATCTCCTCGTCTCGAAGACTATTGCGAGATTTTCTCCGGTTTCAACGGCTCCTCACGC 323
|| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 178 TTGTCTCCTCGTCTCGAAGACTACTGCGAGATTTTCGCCGGATTCAACGGCTCCTCACGC 237
Query 324 GCCGCCGTTTCTTCGATTCCGGTACTCGATCTTCCACTTGTTGATGATAGAGATGTCTAC 383
||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 238 GCCGCCGTTTCCTCGATTCCGGTGCTCGATCTTCCACTAGTTGATGACAGAGATGTCTAC 297
Query 384 TTCGATGTTCGGAGTCAAGGTTTTGACTACCGTGAAGTCTTCGGAGGGTTTAACGATCTC 443
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 298 TTCGATGTTCGGAGTCATGGTTTTGACTACCGTGAAGTCTTCGGAGGTTTTAACGATCTC 357
Query 444 GATTTAGCTCCGTCGTATGAAGAACTGTTTTTGCAGCAGAAGTCTACTACGGTGGTTGGT 503
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 358 GATTTAGCTCCGTCGTATGAAGAACTGTTTTTGCAGCAGCGGTCT-C--CGGTGGTTGGT 414
Query 504 GATGGTGATTCCTCCGACGATGCTTGGACTCCTGAGGAAGTAGAGTCATGCTCAGGTGGT 563
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 415 GATGGTGATTCCTCCGACGATGCTTGGACTCCCGAAGAAGTAGAGTCATGCTCAGGTGGT 474
Query 564 ACAGAACATTCTGGCAAAAGTCCTTGCTTTTCTAATGGTAGAGACTCATATGATTCCATT 623
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 475 ACAGAACATTCTGGCAAAAGTCCTTGTTTTTCTAATGGTAGAGATTCATATGATTCCATT 534
Query 624 GATGGAAGTACAGAGTTCAACATTTCTTATAACAAAGCTAGTCAGATAAGCGGCGGTGAG 683
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 535 GATGGAAGTACAGAGTTCAACATTTCCTATAACAAAGCTAGCCAGATAAGCGGCGGCGAC 594
Query 684 ACAAATATGTCCTCAAGTGGTGTGATACGTGTAG-CTGATCTTGGTGCTATTCCTG 738
||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 595 ACAAATATGTCCTCAAGTGGTGTGATACGTG-AGGCTGATCTTGGTGCTATTCCTG 649
Score = 730 bits (395), Expect = 0.0
Identities = 427/443 (96%), Gaps = 0/443 (0%)
Strand=Plus/Plus
Query 2272 TTGCACTTgaacaagagaaggaacgaaggataaaagaagcacgtgaaaaagaagaaaacg 2331
|||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
Sbjct 2117 TTGCACTTGAACAAGAGAAGGAACGAAGAATAAAAGAAGCTCGTGAAAAGGAAGAAAATG 2176
Query 2332 agcgaagaataaagGAGGCACGTGAGAAGGCAGAGCTGGAGCAAAGACTGAAAGCAACTC 2391
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2177 AGCGAAGAATAAAAGAGGCTCGTGAGAAGGCAGAGCTGGAGCAAAGACTGAAAGCAACTC 2236
Query 2392 TTGAACaagaagagaaggaaaggcagattaaagaaagacaagagagagaagaaaatgaga 2451
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2237 TTGAACAAGAAGAGAAGGAAAGGCAGATTAAAGAGTGTCAAGAGAGAGAAGAAAATGAGA 2296
Query 2452 ggagagctaaagaggttcttgagcaggcagagaatgagaggAAGTTGAAAGAAGCCCTCG 2511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 GGAGAGCTAAAGAGGTTCTTGAGCAGGCAGAGAATGAGAGGAAGTTGAAAGAAGCCCTCG 2356
Query 2512 AGCaaaaggagaacgaaagaaggctgaaagagacacgtgaaaaagaggagaataagaaga 2571
||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 2357 AGCAAAAGGAGAAAGAAAGGAGGCTGAAAGAGACACGTGAAAAAGAGGAGAATGAGAAGA 2416
Query 2572 aactgagagaagctattgagctagaagagaaagaaaaaagactgatagaagcttttgaga 2631
| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2417 AGCTGAAAGAAGCTATTGAGCTAGAAGAGAAAGAAAAAAGGCTCATAGAAGCTTTTGAGA 2476
Query 2632 gggcagagattgagagaagactgaaagagGATCTTGAACAGGAAGAGATGAGGATGAGGC 2691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2477 GGGCAGAGATTGAGAGAAGACTGAAAGAGGATCTTGAACAGGAAGAGATGAGGATGAGGC 2536
Query 2692 TGCAAGAAGCCAAGGAAAGAGAA 2714
|||||||||||||||||||||||
Sbjct 2537 TGCAAGAAGCCAAGGAAAGAGAA 2559
Score = 473 bits (256), Expect = 4e-132
Identities = 283/296 (96%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 4050 AGAATTGCTGAAACCTTAGACACCGAAGTAAAAAGATGGTCGAGTGGAAAAGAAGGAAAC 4109
||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct 3889 AGAATCGCTGAAACCTTAGATACCGAAGTAAAGAGATGGTCAAGTGGAAAAGAAGGGAAC 3948
Query 4110 ATAAGAGCATTACTCTCAACACTACAATATATTCTCGGTCCCG-AGAGCGGTTGGCAACC 4168
||||||||||||||||||||||||||||| || |||||||||| || |||| ||||||||
Sbjct 3949 ATAAGAGCATTACTCTCAACACTACAATACATCCTCGGTCCCGAAG-GCGGATGGCAACC 4007
Query 4169 GTTACCGTTAACAGAAGTGATAACTTCAGCAGCCGTGAAGCGAGCTTACAGGAAAGCTAC 4228
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 4008 GTTACCATTAACAGAAGTCATAACTTCAGCAGCCGTGAAGCGAGCTTACAGGAAAGCAAC 4067
Query 4229 ACTTTGTGTTCATCCAGACAAGTTACAGCAAAGAGGTGCAAACATTCATCAGAAATATAT 4288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4068 ACTTTGTGTTCATCCAGACAAGTTACAGCAAAGAGGTGCAAACATTCATCAGAAATATAT 4127
Query 4289 CTGCGAAAAGGTCTTCGATCTTCTTAAGGAAGCTTGGAACAGATTCAACTCAGAAG 4344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4128 CTGCGAAAAGGTCTTCGATCTTCTTAAGGAAGCTTGGAACAGATTCAACTCAGAAG 4183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164599003225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5