BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36530.2
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490984 jgi|Araly1|490984|fgenesh2_kg.7__417__AT4G36530.2 2167 0.0
> Ahg490984 jgi|Araly1|490984|fgenesh2_kg.7__417__AT4G36530.2
Length=1439
Score = 2167 bits (1173), Expect = 0.0
Identities = 1332/1407 (95%), Gaps = 18/1407 (1%)
Strand=Plus/Plus
Query 1 GTCGAGCGGATTCGACTTGTCTGGCTCAGGGGTCGCCACAACTCTCCCGCAAGTTCACAC 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GTCGAGCGGATTCGACTTGTCTGGCTCAGGCGTCGCCACAACTCTCCCGCAAGTTCACAC 60
Query 61 A-TACACTCGGTGCTCA-AAAAGTTTGTCCTTTTTGCATCTCTCAGTTCTGAAATATCTG 118
| | ||||||||||||| |||||||||| |||||||||||| | || |||||||||||||
Sbjct 61 ACT-CACTCGGTGCTCAGAAAAGTTTGTTCTTTTTGCATCTGTTAGCTCTGAAATATCTG 119
Query 119 GTTCTC---T--TGTCCTTGAAAATTTTACGAGGTTGTTCTCTGTGAATAATCGATGTCT 173
|||||| | | |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 120 GTTCTCTTTTCCTTTCCTTGGAGATTTTACGAGGTTGTTCTCTGTAAATAATCGATGTCT 179
Query 174 GCTTCATGTGCTTTAACACCGTCTGTTAGGACAGAGTTATTCAGTTCATCATCATCTAAA 233
|||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 180 GCTTCATGTGCTCTAACACCGTCTGTTAGGACAGAGTTATTCAG-T--TCATCATCTAAA 236
Query 234 AGATCAATCTTTCCTGCT-AGAATTTGTCGACCAAGAAACAAATGTGAAATCAGCAGAA- 291
|||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||
Sbjct 237 AGATCAATCTTTCCTGCTCA-AATTTGTCGACCCAGAAACAAATGTGAGATCAGCAGAAG 295
Query 292 GGGATTTTGCAATTAGGGGAGGGATTGTTGCTTCTGGAGTTTCAGTCATGGATACTTCTT 351
|||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 296 GGGA-TTTGCAATCAGAGGAGGGATTGTTGCTTCTGGAGTTTCAGTCATGGGCACTTCTT 354
Query 352 CTGCTTCTTCTCAGTCTGTTCAAGGTAGTGAGAGGTTGGCTTTTAAACCAGAAGGCTATA 411
||| ||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 355 CTG---CTTCTCAGTCTGTCCAAGGTAGTGAGAGGTTGGCTTTTAAACCACAAGGGTATA 411
Query 412 ACTTTTGGGAATGGAGAGGTCACAAGATTCATTATGTTGTTCAAGGAGAAGGCTCGCCTC 471
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 412 ACTTTTGGGAATGGAGAGGTCACAAGATTCATTATGTAGTTCAAGGAGAAGGCTTACCTC 471
Query 472 TAGTTCTTATTCATGGTTTTGGTGCTTCTGTCTTTCATTGGAGGTATAACATTCCTGAAT 531
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTGTTCTTATTCATGGCTTTGGTGCTTCTGTCTTTCATTGGAGGTATAACATTCCTGAAC 531
Query 532 TGGCTAAGAAATACAAGGTTTACGCCTTGGACTTACTCGGTTTCGGATGGAGTGACAAAG 591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 532 TGGCTAAGAAATACAAGGTTTACGCCTTGGACTTGCTCGGTTTCGGATGGAGTGACAAAG 591
Query 592 CTCTCATAGAGTATGATGCCATGGTTTGGACAGATCAAGTTATTGATTTCATGAAAGAGG 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTCTCATAGAGTATGATGCCATGGTTTGGACAGATCAAGTTATTGATTTCATGAAAGAGA 651
Query 652 TAGTGAAAGAACCAGCTGTTGTCGTTGGAAACAGCCTTGGGGGATTTACGGCATTGTCAG 711
|||||||||||||||||||||| || || |||||||| |||||||| || ||||||||||
Sbjct 652 TAGTGAAAGAACCAGCTGTTGTGGTCGGGAACAGCCTCGGGGGATTCACAGCATTGTCAG 711
Query 712 TTGCGGTTGGATTACCCGAGCAAGTCACGGGAGTTGCACTTCTGAACTCTGCGGGACAAT 771
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 712 TTGCGGTTGGATTACCCGAGCAGGTCACGGGAGTTGCTCTTCTAAACTCTGCAGGACAAT 771
Query 772 TTGCAGCCGAGAGTAGAAAACGAGAGGAAGCTGATGAAACTGTGATAACCAAGTTTATAG 831
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 TTGCAGCCGAGAGTAGAAAACGAGAGGAAGCTGATGAAACCGTGATAACCAAGTTTATAG 831
Query 832 TTAAGCCGCTAAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCA 891
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTAAGCCACTTAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCA 891
Query 892 AGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTGTGTACATAGACTCTACTAATGTCG 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTGTGTACATAGACTCTACTAATGTCG 951
Query 952 ATGACTACCTCGTCGAATCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATGACTACCTCGTCGAATCCATTTCAAAACCTGCAACAGATCCAAATGCTGGAGAAGTAT 1011
Query 1012 ACTACAGATTGATGACAAGGTTCTTAACAAACCAGAGTAGATACACTCTAGATAGTGTTC 1071
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 ACTACAGACTGATGACAAGGTTCTTAACAAACCAGAGCAGATACACTCTAGATAGTGTTT 1071
Query 1072 TAAGTAAGATGACTTGTCCGCTTCTGTTGGTTTGGGGAGATCTTGATCCGTGGGTCGGTC 1131
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 1072 TAAGTAAGATGACTTGTCCGCTTCTGTTGCTTTGGGGAGACCTTGACCCGTGGGTCGGTC 1131
Query 1132 CAGCTAAAGCCGAGAAAATCAAAGCATTTTACTCGAACTCATCGCTCGTTCACTTACAAG 1191
|||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1132 CAGCTAAAGCTGAGAAAATCAAAGCATTTTACTCGAACTCATTGCTCGTGCACTTACAAG 1191
Query 1192 CAGGGCATTGTCCTCATGATGAAGTCCCGGAAGCTGTAAACAAGGCTTTGTTGGATTGGT 1251
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1192 CAGGGCATTGTCCTCATGATGAAGTCCCAGAAGCTGTAAACAAGGCTCTGTTGGATTGGT 1251
Query 1252 TGTCCATTAATATTGCTTCAAAGCCAGCTTCTCCTATAGTCTTGGAGACGTAAAAACTCT 1311
||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1252 TGTCCATTAATGTAGCTTCAAAGCCAGCTTCTCCTATAGCCTTGGAGACGTAAAGACTCT 1311
Query 1312 TTTTGTGAAGGAAGTATATAGTTGTAAATACATTGTTACCTTTTACAATTGCTGCTTCTG 1371
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTTTGTGAAGGAAGTATAGAGTTGTAAATACATTGTTACCTTTTACAATTGCTGCTTCTG 1371
Query 1372 TGCTTGTGTTATCTGAGATTTAGCAGA 1398
||||||||||||||||||||||||||
Sbjct 1372 AGCTTGTGTTATCTGAGATTTAGCAGA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5