BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36540.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888409 jgi|Araly1|888409|Al_scaffold_0007_395 1391 0.0
Ahg480739 jgi|Araly1|480739|fgenesh2_kg.3__3440__AT2G18300.2 287 2e-76
> Ahg888409 jgi|Araly1|888409|Al_scaffold_0007_395
Length=915
Score = 1391 bits (753), Expect = 0.0
Identities = 863/917 (94%), Gaps = 4/917 (0%)
Strand=Plus/Plus
Query 117 ATGGACTTGTCTGTACTTGATAGGCTTAAGTGGCTGCAACAGCAACAAATGGTTTCACCT 176
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGACTTGTCTGTACTTGATAGGCTTAAATGGCTGCAACAGCAGCAAATGGTTTCACCT 60
Query 177 GAGTTTCTTCAGATACTTGGCTCAGATGGGAGAGAAGAGCTCAAAAGAGTTGAGAGTTAC 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GAGTTTCTTCAGATACTTGGCTCAGATGGGAGAGAAGAGCTCAAAAGAGCTGAGAGTTAC 120
Query 237 TTGGGAAACAACAATGATGAGCTGCAGAGTTTCAGACATTTTCCCGAATTCGGACCGGAT 296
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 TTGGGAAACAACAATGATGAGCTGCAGAGTTTCAGACATTTTCCCGAGTTTGGACCGGAT 180
Query 297 TATGATACTACTGATGGCTGCATTTCTAGGACAAGTAGCTTCCATATGGAGCCAGTGAAG 356
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TATGATGCTACTGATGGCTGCATTTCTAGGACAAGTAGCTTCCAAATGGAGCCAGTGAAG 240
Query 357 AATAATGGACACAGCAGAGCCATTACCTTGcagaacaagagaaaaccagagggtaagaca 416
|| |||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 241 AACAATGGACATAACAGAGCCATTGCCTTGCATAACAAGAGAAAACCAGAGGGTAAGACA 300
Query 417 gaaaagagagagaagaagaagatcaaagcagagGATGAAACAGAGCCAAGCATGAAAGGG 476
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GAAAAGAGAGAGAAGAAGAAGATCAAAGCAGAGGATGAAACAGAGTCAAGCATGAAAGGA 360
Query 477 AAATCAAACATGAGTAACACAGAGACATCTTCAGAAATTCAGAAACCAGATTACATTCAT 536
||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 361 AAAACAAACATGAGCAACACAGAGACATCTTCAGAGATTCAGAAACCAGATTACATCCAT 420
Query 537 GTTAGGGCTAGACGAGGTGAAGCCACCGACAGACATAGCTTAGCAGAGAGGGCAAGAAGA 596
|| || |||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 421 GTCAGAGCTAGACGTGGTGAAGCTACCGACAGACATAGCTTAGCAGAGAGGGCAAGGAGA 480
Query 597 GAAAAGATAAGCAAGAAGATGAAATGTCTACAAGATATTGTTCCTGGATGCAACAAAGTT 656
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GAAAAGATAAGCAAGAAGATGAAATGTCTTCAAGATATTGTTCCTGGATGCAACAAAGTA 540
Query 657 ACTGGAAAAGCTGGTATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAA 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTGGGAAAGCTGGTATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACAACAA 600
Query 717 GTCGAGTTCTTGTCGATGAAACTCTCTGTCATAAATCCAGAACTTGAGTGTCATATCGAT 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCGAGTTCTTATCGATGAAACTCTCTGTCATAAATCCAGAACTTGAGTGTCATATCGAT 660
Query 777 GATTTATCCGCAAAACAGTTTCAGGCTTACTTCACAGGTCCTCCAGAAGGTGACTCGAAG 836
||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||
Sbjct 661 GATTTATCCGCAAAACAGTTTCAGGCTTACTTCACTGGTCTTCCCGAAGCTGACTCGAAG 720
Query 837 CAGTCAATCATGGCGGATTTTCGGTCTTTTCCATTACATCAGCAAGGATCTTTAGATTAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 CAGTCAATCATGGCGGATTTTCGGTCTTTTCCATTACATCAGCAAGGATCTATAGATTAC 780
Query 897 TCAGTCATAAACT-CAGACCACACCA-CATCTCTCGGCGCTAAAGATCATACATCATCAA 954
|||||| | ||| || | || | | |||||| | | |||||||| ||||| ||||
Sbjct 781 TCAGTCTTGAACGGCACTGTA-ACAATC-TCTCTCTGTTCAAAAGATCAGACATCTTCAA 838
Query 955 GCTGGGAAACTCACTCACAGTGTCTTTACAACAGCTTGAGAACCGATTCTGTTTCCAATT 1014
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 839 GCTGGGAAACTCACTCACAATGTCTTTACAACAGCTTAAGAACCGATTCCGTTTCAAATT 898
Query 1015 TCTTCAGCCTCAAGTaa 1031
|||||||||||||||||
Sbjct 899 TCTTCAGCCTCAAGTAA 915
> Ahg480739 jgi|Araly1|480739|fgenesh2_kg.3__3440__AT2G18300.2
Length=1465
Score = 287 bits (155), Expect = 2e-76
Identities = 269/324 (83%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 493 ACA-CAGAGACATCTTCAGAAATTCAGAAACCAGATTACATTCATGTTAGGGCTAGACGA 551
||| || ||| | ||||||| ||||| ||| |||||| || || || || ||| | |||
Sbjct 606 ACATCAAAGAAAGCTTCAGAGATTCAAAAATTAGATTATATCCACGTGAGAGCTCGTCGA 665
Query 552 GGTGAAGCCACCGACAGACATAGCTTAGCAGAGAGGGCAAGAAGAGAAAAGATAAGCAAG 611
|| ||||||| || ||||| |||||||| || ||||| |||||||||||||| ||||||
Sbjct 666 GGCCAAGCCACTGATAGACACAGCTTAGCTGAAAGGGCGAGAAGAGAAAAGATCAGCAAG 725
Query 612 AAGATGAAATGTCTACAAGATATTGTTCCTGGATGCAACAAAGTTACTGGAAAAGCTGGT 671
|||||||||| ||| ||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 726 AAGATGAAATATCTGCAAGATATTGTGCCTGGATGCAACAAGGTCACAGGAAAAGCTGGT 785
Query 672 ATGCTTGATGAGATCATCAACTATGTCCAATCTCTGCAACA-ACAAGTCGAGTTCTTGTC 730
|||||||||||||||||||| ||||| |||| ||| ||| | ||||||||| ||||||||
Sbjct 786 ATGCTTGATGAGATCATCAATTATGTTCAATGTCTCCAA-AGACAAGTCGAATTCTTGTC 844
Query 731 GATGAAACTCTCTGTCATAAATCCAGAACTTGAG-T-GTCATATCGATGATTTATCCGCA 788
|||||||||| ||||| | || || ||||| ||| | | | | || ||| |||| | |
Sbjct 845 GATGAAACTCGCTGTCTTGAACCCGGAACTAGAGCTTGCCGTG--GAAGATGTATCTGTA 902
Query 789 AAACAGTTTCAGGCTTACTTCACA 812
|||||||||||||||||||| |||
Sbjct 903 AAACAGTTTCAGGCTTACTTTACA 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5