BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36550.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353186 jgi|Araly1|353186|fgenesh1_pg.C_scaffold_7000359 2344 0.0
> Ahg353186 jgi|Araly1|353186|fgenesh1_pg.C_scaffold_7000359
Length=2256
Score = 2344 bits (1269), Expect = 0.0
Identities = 1514/1630 (93%), Gaps = 26/1630 (2%)
Strand=Plus/Plus
Query 983 AAA-AATCATTTGTGAAGATCACAAACAGAACTCCTTCACGCATCATCAGTCC-ATCGAT 1040
||| ||||||||||| |||||||||| |||| || || | |||||||| || ||||||
Sbjct 641 AAAGAATCATTTGTGCAGATCACAAAGAGAATTCTTTTTCACATCATCA-CCCGATCGAT 699
Query 1041 GATTCTCTGCATGCTAATGCTGCAGAAGCTGAGGCTTCTGAGGAACACAATGGTACACTT 1100
|||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 700 GATTCTCTGCGTGCTAATGCTGCGGAAGCTGAGGGTTCTGAGGAACACAATGGTACACTT 759
Query 1101 CCTGAGAAATTTAAGTGCACGCTTTCTCGTACCGTGATGTATGATCCAGTCATCATCTCC 1160
|| ||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 760 CCCGAGCAATTTAAATGCCCGCTTTCTCTTACCGTGATGTATGATCCAGTCATCATTTCC 819
Query 1161 TCAGGCAACACCTTTGAGAGGATGCAGATTCAGAAATGGTTCGATGAAGGTAATGATTCT 1220
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 820 TCAGGCCACACTTTTGAGAGGATGCAGATTCAGAATTGGTTCGATGAAGGTAATGATTCT 879
Query 1221 TGTCCTATATCTAA-AAGGAAACTGGATGACTTCACATTGAAGCCTAATGTAGAGCTTAA 1279
||||||||||| || |||||||||| |||||||| ||||| |||||||||||| ||||||
Sbjct 880 TGTCCTATATC-AAGAAGGAAACTGAATGACTTCGCATTGGAGCCTAATGTAGCGCTTAA 938
Query 1280 GAGTCAGATATCAGAATGGTGCGCGAAGAACGGTCTTGATGTTCAAGATCCAGCGAGGAA 1339
|| |||||||||| |||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 939 GATTCAGATATCAAAATGGTGCGCGAGGAACGGTCTTCATGTTCAAGATCCAGCGACGAA 998
Query 1340 GCACGTAAAGGCTTCCAACAGTATCGACTTCTCTGTTTCCATCGCTAGTTTCGGAAGTTC 1399
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 GCACCCAAAGGCTTCCAACAGTATCGACTTCTCTGTTTCCATCGCTAGTTTCGGAAGTTC 1058
Query 1400 TCTGTACAACATCCCTGATCACAGCGGCATTTCGATTACGGATTTCAACTCGAGCTATTC 1459
||||||||| ||||| |||| ||||||| |||||||||||||||| |||| |||||||||
Sbjct 1059 TCTGTACAATATCCCAGATCTCAGCGGCCTTTCGATTACGGATTTAAACTTGAGCTATTC 1118
Query 1460 CATTGATTCGTCATCCTACTCTAAGATGTCAAAGGGTGGTTACTTCACTCCAATGCAGAG 1519
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1119 CATTGATTCGTCATCCTACTCTAAGATGTCAAAGGGTGGTTACTTCATTCCAATGCAGAG 1178
Query 1520 GATAGATTCTGCTTCAGGCGC---T---GGTGACACAGATTCTAGTCACAGCGAGATTGA 1573
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 1179 GATAGATTCTGCTTCAGGCGCTGGTGAAGGTGACACAGATTCTAGTCACAGCGATATTGA 1238
Query 1574 GATAGATCCCTTGTGTGGACTCACAAACCTTCCATGGGATGCGCAGATCAAAGTCGTCGA 1633
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 1239 GATAGATCCCTTGTGTGGACTCACTAACCTTCCATGGGATGCGCAGATCAAGGTCATCGA 1298
Query 1634 AGATGTAAGAAGTCGTTTTGAGCACAGTACTCGTGCTTTTCGGTCTATGTCACCGAGTAA 1693
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1299 AGATGTAAGAAGTCGTTTTGAGCACAGTACTCGGGCTTTTCGGTCTATGTCACCGAGTAA 1358
Query 1694 ATTTCTTGAGCCACTTATCACATATTTGAAGAATGCTCTCGAAAGAAATGGCACCGCTGG 1753
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1359 ATTTCTTGAACCACTTATCACATATCTGAAGAATGCTCTCGAAAGAAATGGCACCGCGGG 1418
Query 1754 AGAGATAATAAAGGGTGGATTGGATTTGTTGCTGGCTTTCCTTAGTGGAAATAGGAGAGC 1813
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1419 AGACATAATAAAGGGTGGATTGGATTTGTTGTTGGCTTTCCTTAGTGGAAATAGGAGGGC 1478
Query 1814 TATAGAATCTTTGGAAGAAGAGGTTTTCAAAATGTTCTCAGTCTTTCTTGAGTCTGAGGT 1873
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1479 TATAGAATATTTGGAAGAAGAGGTTTTCAAAATGTTCTCAGTCTTTCTCGAGTCTGAGGT 1538
Query 1874 AGTAGCTGAAGAAGCTCTAAACATACTTGAGGTTCTGTCAAACCATCCGCACGGTCCGTC 1933
|||||||||||||||| | |||||| |||||||||| || ||||||||||||||||| ||
Sbjct 1539 AGTAGCTGAAGAAGCTTTGAACATAATTGAGGTTCTCTCCAACCATCCGCACGGTCCCTC 1598
Query 1934 CAAGATAACTTCATCAGGATCTCTTTCTTCCCTTTTGAAGATCGTAGAGTCCCAAGCAGA 1993
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1599 CAAGATAACTTCATCAGGCTCTCTTTCTTCCCTTTTGAGGATCGTAGAGTCTCAAGCAGA 1658
Query 1994 ACATCTCCAAGAACAGGCTATGATCACACTCAAGAATCTTTCATCAAGCATGGAGATTTG 2053
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1659 ACATCTCCAAGAACAAGCTATGATCACACTCAAGAATCTTTCATCAAGCATTGAAATTTG 1718
Query 2054 TCTGGAAATGGTATCTCTCGATTTCATCCAGAAGCTCACATCTTTCTTGCAACAAAAAGT 2113
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TCCGGAAATGGTATCTCTAGATTTCATCCAGAAGCTCACATCTTTCTTGCAACAAAAAGT 1778
Query 2114 TTTCTGCAAACACTCGATTATCATTCTGAAAAACCTCTGCAGCACCGAGAAAGGTCGGGG 2173
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1779 TTTCTGCAAACAATCGATTATCATTCTGAAAAACCTCTGCAGCACTGAGAAAGGTCGGGT 1838
Query 2174 TTGTATCACCGAAACCCCGGATTGTTTAGCTTCCATAGCTGAATTACTCGAGTCAAATGT 2233
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1839 TTATATCACCGAAACCCCGGATTGTTTAGCTTCCATAGCTGAATTACTCGATTCAAATGT 1898
Query 2234 TCCCGAGGAGCAAGAGAACGCAATCTCCATCCTCCTTCAGCTCTGTGTGCAGAAGATAGA 2293
|||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||
Sbjct 1899 TCCCGAGGAGCAAGAGAATGCAATCTACACCCTCCTTCAGCTCTGTACGCAGAAGATAGA 1958
Query 2294 GTATTGCTGTCTTGTCGTGAGAGAAGCAACTGATATTTACTCATCTCTAATCTTGATATC 2353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1959 GTATTGCTGTCTTGTCGTGAGAGAAGCAACTGATATTTACTCATCTCTAATCTTGATAAC 2018
Query 2354 CAACAATGGAACAGAGGAAGTAAA-GGTGAGTGCATCAGAATTACTTAGAGCTCTTGTAG 2412
||| |||||||||||||||| ||| || | ||||||| ||||| ||||||||||||| ||
Sbjct 2019 CAAAAATGGAACAGAGGAAGCAAAAGGGG-GTGCATCGGAATTGCTTAGAGCTCTTGAAG 2077
Query 2413 AAGTAGATTCCGACAaagaagaagaagaagaagTTTCCTCCAGACCAGAAGGAAGAA-CA 2471
||||||||||||||| || ||||||||| | ||||||||||||||| ||||| ||
Sbjct 2078 AAGTAGATTCCGACA--GA-GAAGAAGAA----T--CCTCCAGACCAGAAG-AAGAAACA 2127
Query 2472 ACTGCTTCGCCTACTTCACAGGTTGTTACTCCAGTTACTCATCCGGAACCTGTTAAAATA 2531
||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2128 ACTGCTTCGACTACTTTACAGGTTGTTACTCCAGTTACTCATCAAGAACCTATTAAAATA 2187
Query 2532 ACACCATCTCCCAAGAAA-TCTGGTCTTTTTGGATTCAATTTCTCCAGTCTCAAGAAGAA 2590
|||||||| ||||| ||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2188 ACACCATC-CCCAAAAAAATCTGGTCGTTTTGGATTCAATTTCTCCAGTCTCATGAAGAA 2246
Query 2591 GAAAAAATAG 2600
||||||||||
Sbjct 2247 GAAAAAATAG 2256
Score = 756 bits (409), Expect = 0.0
Identities = 498/542 (92%), Gaps = 2/542 (0%)
Strand=Plus/Plus
Query 444 ATGAGGATCGATTACACAGAACGGATGCCTCAATCCTATAAGATGCACTCTTCCATGTGC 503
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGATTGATTACACAGAACGGATGCCTCAATCCTATAAGATGCACTCTTCCATGTGC 60
Query 504 TTAGAATTGAAGAGGCTAGTTGATAGAATCATGAGAATCTTTCCTGATATAGAAGATGCT 563
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGAATTGAAGAAGTTTGTTGATAGAATCATGAGAATCTTTCCTGATATAGAAGATGCT 120
Query 564 CGACCTGGATGCTCTTCCGGGATACAGACTCTTTGTTTACTCCACA-ATGCTTTGGATAA 622
|||||||||||||| || |||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 CGACCTGGATGCTCCTCAGGGATACAGACTCTTTGTTTACTCCACATA-GCTTTGGATAG 179
Query 623 AACTAAGCAGCTTCTTCAATATTGCAGTGAATCCAGTAAACTCTACATGGCAGTAACAGG 682
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AGCTAAGCAGCTTCTTCAATATTGCAGTGAATCCAGTAAACTCTACATGGCGGTAACAGG 239
Query 683 AGATGCTATACTCGCAAGAGGTTCTAGAGCTAAAAAATCATTAGAGCAATGCTTAAACGA 742
|||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 AGATGCTAGACTCTCAAGAGGTTCTAGAGCCAAAAAATCATTAGAGCAATGCTTAAACGA 299
Query 743 CATTAGAAGTATAGTACCAACTATTTTGGAGATCAAGATATCTCAGATAGTCCAAGACCT 802
|||| ||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 300 CATTCGAAGTATGGTACCGACTATTTTGGATACCAAGATATCTCAGATAGTCCAAGACCT 359
Query 803 TAGATCAACACAGTTGACTCTAGAATTCTCGGAAGAAGAAGCTGGGAAAGCTATTAGAGA 862
||||||||| ||| ||| |||||||||| ||||||| |||||||||| ||||||||||
Sbjct 360 TAGATCAACTGTGTTTACTGTAGAATTCTCTGAAGAAGCAGCTGGGAAAACTATTAGAGA 419
Query 863 ATTGATGCAAAAGAGCACGTCTTCCTCTGCTTCTCCGGATGAGATAAAAGATTTTCATTA 922
|||||||| | ||||| ||||| |||| ||||||||||||||| | |||||| ||||
Sbjct 420 ATTGATGCGACCCAGCACTTCTTCTTCTGTTTCTCCGGATGAGATTAGAGATTTCCATTT 479
Query 923 TGCTGCGTTAAAACTCCAACTTTCAACACCTGAAGCTATTGTGACAGAGAGAAGATCCTT 982
||| || || |||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 480 TGCAGCATTGAAACTCCAACTTTCAACACCTGAAGCCATTGTGACAGAGAGAACATCTTT 539
Query 983 AA 984
||
Sbjct 540 AA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5