BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G36560.1

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490980 jgi|Araly1|490980|fgenesh2_kg.7__413__AT4G36560.1          252    1e-66


> Ahg490980 jgi|Araly1|490980|fgenesh2_kg.7__413__AT4G36560.1
Length=168

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 158/168 (94%), Gaps = 4/168 (2%)
 Strand=Plus/Plus

Query  166  ACAATAAAACATAGCGAGTGGAGAGGGATCAGAGTAGTTAAACAATTAATGTCCAAAACA  225
            |||||||||||||||||||||||||| ||||||| ||||||||    |||||||||||||
Sbjct  1    ACAATAAAACATAGCGAGTGGAGAGGAATCAGAGAAGTTAAAC----AATGTCCAAAACA  56

Query  226  AAGGAGCAGAAGAAGCGTAGGAAAGGCGCAGATGTCGTCGATAAAATTCATCTACGAGAT  285
            ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct  57   AAGGAGCAGAAGAAGCGTAAGAAAGGCGCAGATGTCGTCGATAAGATTCATCGACGAGAT  116

Query  286  CTTCCCAAGATTTGGAATTTGTCCACTTGTATTGCCACTCAATGTTAA  333
            |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  117  CTTCCCAAGATTTGGAATCTGTCCACTTGTATTGCCACTCAATGTTAA  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11790077001


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5