BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G36570.1

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944223 jgi|Araly1|944223|scaffold_700452.1                        621    1e-177


> Ahg944223 jgi|Araly1|944223|scaffold_700452.1
Length=393

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 361/373 (97%), Gaps = 1/373 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCAACTCAATGAGCTCTAGCGCTTCTTGGACACGTAAGGAGAACAAATTATTT  60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22   ATGGCTTCCAACTCTATGAGCTCTAGCGCTTCTTGGACACGTAAGGAGAACAAATTATTT  81

Query  61   GAAAGGGCGTTGGCTACATATGACCAGGACACTCCTGACCGTTGGCATAACGTTGCAAGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  82   GAAAGGGCGTTGGCTACATATGACCAGGACACTCCTGACCGTTGGCATAACGTTGCAAGA  141

Query  121  GCCGTTGGCGGCAAATCAGCTGAAGAAGTAAGGCGACACTACGAGCCTCCTCATTAGGGA  180
            || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  142  GCAGTTGGTGGCAAATCAGCTGAAGAAGTAAGGCGACACTACGAGC-TCCTCATTAGGGA  200

Query  181  TGTCAATGACATTGAGTCAGGGCGTTATCCACATCCCAATTACCGTTCAAATGGAAACAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  201  TGTCAATGACATTGAGTCAGGGCGTTATCCACATCCCAATTACCGTTCAAATGGAAACAG  260

Query  241  CCACTGAAAGCATTAAAGGAACTCCAAAAGGCTCTACTGAAGTGGACATGGTTCCAAAAC  300
            ||||||||||| || ||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct  261  CCACTGAAAGCTTTTAAGCAACTCTAAAAGGCTCTACTGAAGTCGACATGGTTCCAAAAC  320

Query  301  CATTCACAAAGCACATCTAAGCAAAGATATCTAAATGTATTTACTTGTTTTTGTGTTACG  360
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  CATTCACAAAGAACATCTAAGCAAAGATATCTAAATGTATTTACTTGTTTTTGTGTTACG  380

Query  361  AATATGTAAGAAT  373
            | |||||||||||
Sbjct  381  ATTATGTAAGAAT  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14346501464


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5