BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36590.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328110 jgi|Araly1|328110|fgenesh1_pm.C_scaffold_7000337 568 4e-161
Ahg929869 jgi|Araly1|929869|scaffold_302326.1 150 2e-35
> Ahg328110 jgi|Araly1|328110|fgenesh1_pm.C_scaffold_7000337
Length=672
Score = 568 bits (307), Expect = 4e-161
Identities = 390/427 (91%), Gaps = 17/427 (4%)
Strand=Plus/Plus
Query 372 GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTATTGAAAGAA 431
|||||| ||| |||||||||||||||| | |||||||||||||||||| || ||||||||
Sbjct 250 GTGCTGACAACCCAGGAAAAGGAGAAAAATAAGAGAATGGTTTTGGACATAATGAAAGAA 309
Query 432 TCCAGAGAAC-AAGTAGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 490
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TCCAGAGAACAAAG-AGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 368
Query 491 AACCAACCAGCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGAGAAATGTC 550
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 369 AACCAACCATCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGTGAAATGTC 428
Query 551 TCAA---TATTCTCAAGTAAATGTTTCGCAGAATTACTTTGGTCAAAGTTCTGGCGTGAT 607
|||| |||||||||||||||||||| ||||||||||| || |||||||||||| | ||
Sbjct 429 TCAACAATATTCTCAAGTAAATGTTTCTCAGAATTACTTCGGCCAAAGTTCTGGCTTTAT 488
Query 608 TGGTGGTGGTAATGTTG--G----CATTGATCTTTTTGATCAAAGAAGAAATGCATTCAA 661
||||||| |||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 489 TGGTGGTCCTAATGTTGATGTTGGCATTGATCTTTTTGATCAAAGAAGAAATACATTCAA 548
Query 662 CTATAATCCAAACATGG---TGTTTCCCAATCATACACCACCAATGTTTGGATACAACAA 718
||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||
Sbjct 549 CTATAATCCAAACATGGCGGTGTTTCCTAACCATACACCA--A-TGTTTGGATACAACAA 605
Query 719 TGATGGAGTTCTCGTTCCGATATCCAACATGAACTACATGTCAAGTTACAACTTCAACCA 778
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 606 TGATGGAGTTATCGTTCCGATATCCAACATGAACTATATGTCAAGTTACAACTTCAACCA 665
Query 779 GAGCTAG 785
|||||||
Sbjct 666 GAGCTAG 672
Score = 348 bits (188), Expect = 5e-95
Identities = 231/252 (92%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 39 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGaaaaaaaTGGAAAACGAAAGC 98
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGAAAAAAATGAAAAACGAGAGC 60
Query 99 AACCTTCAGGTTACTTTCTCAAAAAGAAGATTCGGTCTTTTCAAAAAAGCTAGTGAACTT 158
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 61 AACCTTCAGGTTACTTTCTCGAAAAGAAGCTTTGGTCTTTTCAAAAAAGCTAGTGAACTT 120
Query 159 TGCACATTAAGTGGTGCAGAGATTCTGTTGATTGTGTTCTCTCCTGGTGGGAAAGTGTTT 218
|| |||||| |||||||||| ||| | ||||||| |||||||||||||| |||||||||
Sbjct 121 TGTACATTATGTGGTGCAGAAATTTTAATGATTGTTTTCTCTCCTGGTGGAAAAGTGTTT 180
Query 219 TCTTTTGGCCATCCAAGTGTTCAAGAACTCATTCATCGCTTTTC-GAATCCTAACCATAA 277
|||||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||
Sbjct 181 TCTTTTGGCCATCCAAGTGTTCAAGATCTGATTCATCG-TTTTGAGAATCCTAACTATAA 239
Query 278 TTCTGCCATTGT 289
|||| ||||||
Sbjct 240 TTCTATCATTGT 251
> Ahg929869 jgi|Araly1|929869|scaffold_302326.1
Length=874
Score = 150 bits (81), Expect = 2e-35
Identities = 172/213 (81%), Gaps = 18/213 (8%)
Strand=Plus/Plus
Query 36 AAAATGGTGA-GAAGTACCAAAGGTCGTCAGAAAATAGAGAT-GaaaaaaaTGGAAAACG 93
|||||||||| ||| | ||||||||| || ||||| ||||| | ||||| |||| |
Sbjct 21 AAAATGGTGAGGAA-AAGCAAAGGTCGACAAAAAATCGAGATCG-TGAAAATAAAAAATG 78
Query 94 AAAGCAACCTTCAGGTTACTTTCTCAAAAAGAAGATTC-GGTCTTTTCAAAAAAGCTAGT 152
||| ||||||||||||||||| ||||| |||||| || || ||||||||||||||||||
Sbjct 79 AAAATAACCTTCAGGTTACTTTTTCAAAGAGAAGA-TCTGGCCTTTTCAAAAAAGCTAGT 137
Query 153 GAACTTTGCACA-TTAAGTGGTGCAGAGATTC--TGTTGATTGTGTTCTCTCCTGGTGGG 209
|||||||||||| || |||||||||| | || | || ||||| ||||| ||||||
Sbjct 138 GAACTTTGCACACTTT-GTGGTGCAGA-AGTCGCTATT-ATTGTATTCTCACCTGGTCA- 193
Query 210 AAAGTGTTT-T-CTTTTGGCCATCC-AAGTGTT 239
|||| |||| | ||||||| ||||| || ||||
Sbjct 194 AAAG-GTTTATTCTTTTGGTCATCCGAA-TGTT 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5