BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G36590.1 Length=994 Score E Sequences producing significant alignments: (Bits) Value Ahg328110 jgi|Araly1|328110|fgenesh1_pm.C_scaffold_7000337 568 4e-161 Ahg929869 jgi|Araly1|929869|scaffold_302326.1 150 2e-35 > Ahg328110 jgi|Araly1|328110|fgenesh1_pm.C_scaffold_7000337 Length=672 Score = 568 bits (307), Expect = 4e-161 Identities = 390/427 (91%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 372 GTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTATTGAAAGAA 431 |||||| ||| |||||||||||||||| | |||||||||||||||||| || |||||||| Sbjct 250 GTGCTGACAACCCAGGAAAAGGAGAAAAATAAGAGAATGGTTTTGGACATAATGAAAGAA 309 Query 432 TCCAGAGAAC-AAGTAGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 490 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TCCAGAGAACAAAG-AGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGA 368 Query 491 AACCAACCAGCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGAGAAATGTC 550 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 369 AACCAACCATCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGTGAAATGTC 428 Query 551 TCAA---TATTCTCAAGTAAATGTTTCGCAGAATTACTTTGGTCAAAGTTCTGGCGTGAT 607 |||| |||||||||||||||||||| ||||||||||| || |||||||||||| | || Sbjct 429 TCAACAATATTCTCAAGTAAATGTTTCTCAGAATTACTTCGGCCAAAGTTCTGGCTTTAT 488 Query 608 TGGTGGTGGTAATGTTG--G----CATTGATCTTTTTGATCAAAGAAGAAATGCATTCAA 661 ||||||| |||||||| | |||||||||||||||||||||||||||| ||||||| Sbjct 489 TGGTGGTCCTAATGTTGATGTTGGCATTGATCTTTTTGATCAAAGAAGAAATACATTCAA 548 Query 662 CTATAATCCAAACATGG---TGTTTCCCAATCATACACCACCAATGTTTGGATACAACAA 718 ||||||||||||||||| ||||||| || ||||||||| | |||||||||||||||| Sbjct 549 CTATAATCCAAACATGGCGGTGTTTCCTAACCATACACCA--A-TGTTTGGATACAACAA 605 Query 719 TGATGGAGTTCTCGTTCCGATATCCAACATGAACTACATGTCAAGTTACAACTTCAACCA 778 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 606 TGATGGAGTTATCGTTCCGATATCCAACATGAACTATATGTCAAGTTACAACTTCAACCA 665 Query 779 GAGCTAG 785 ||||||| Sbjct 666 GAGCTAG 672 Score = 348 bits (188), Expect = 5e-95 Identities = 231/252 (92%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 39 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGaaaaaaaTGGAAAACGAAAGC 98 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1 ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGAAAAAAATGAAAAACGAGAGC 60 Query 99 AACCTTCAGGTTACTTTCTCAAAAAGAAGATTCGGTCTTTTCAAAAAAGCTAGTGAACTT 158 |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 61 AACCTTCAGGTTACTTTCTCGAAAAGAAGCTTTGGTCTTTTCAAAAAAGCTAGTGAACTT 120 Query 159 TGCACATTAAGTGGTGCAGAGATTCTGTTGATTGTGTTCTCTCCTGGTGGGAAAGTGTTT 218 || |||||| |||||||||| ||| | ||||||| |||||||||||||| ||||||||| Sbjct 121 TGTACATTATGTGGTGCAGAAATTTTAATGATTGTTTTCTCTCCTGGTGGAAAAGTGTTT 180 Query 219 TCTTTTGGCCATCCAAGTGTTCAAGAACTCATTCATCGCTTTTC-GAATCCTAACCATAA 277 |||||||||||||||||||||||||| || |||||||| |||| |||||||||| |||| Sbjct 181 TCTTTTGGCCATCCAAGTGTTCAAGATCTGATTCATCG-TTTTGAGAATCCTAACTATAA 239 Query 278 TTCTGCCATTGT 289 |||| |||||| Sbjct 240 TTCTATCATTGT 251 > Ahg929869 jgi|Araly1|929869|scaffold_302326.1 Length=874 Score = 150 bits (81), Expect = 2e-35 Identities = 172/213 (81%), Gaps = 18/213 (8%) Strand=Plus/Plus Query 36 AAAATGGTGA-GAAGTACCAAAGGTCGTCAGAAAATAGAGAT-GaaaaaaaTGGAAAACG 93 |||||||||| ||| | ||||||||| || ||||| ||||| | ||||| |||| | Sbjct 21 AAAATGGTGAGGAA-AAGCAAAGGTCGACAAAAAATCGAGATCG-TGAAAATAAAAAATG 78 Query 94 AAAGCAACCTTCAGGTTACTTTCTCAAAAAGAAGATTC-GGTCTTTTCAAAAAAGCTAGT 152 ||| ||||||||||||||||| ||||| |||||| || || |||||||||||||||||| Sbjct 79 AAAATAACCTTCAGGTTACTTTTTCAAAGAGAAGA-TCTGGCCTTTTCAAAAAAGCTAGT 137 Query 153 GAACTTTGCACA-TTAAGTGGTGCAGAGATTC--TGTTGATTGTGTTCTCTCCTGGTGGG 209 |||||||||||| || |||||||||| | || | || ||||| ||||| |||||| Sbjct 138 GAACTTTGCACACTTT-GTGGTGCAGA-AGTCGCTATT-ATTGTATTCTCACCTGGTCA- 193 Query 210 AAAGTGTTT-T-CTTTTGGCCATCC-AAGTGTT 239 |||| |||| | ||||||| ||||| || |||| Sbjct 194 AAAG-GTTTATTCTTTTGGTCATCCGAA-TGTT 224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36941106573 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5