BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36600.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328109 jgi|Araly1|328109|fgenesh1_pm.C_scaffold_7000336 1463 0.0
> Ahg328109 jgi|Araly1|328109|fgenesh1_pm.C_scaffold_7000336
Length=1035
Score = 1463 bits (792), Expect = 0.0
Identities = 976/1060 (92%), Gaps = 32/1060 (3%)
Strand=Plus/Plus
Query 10 ATGATGCTTACGACGGTGGTGACGCTGACGTGGCAGAAGCAATGCTATGGATGGGGAACG 69
|||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGCTTATGATGGTGCTGATACTGACGTGGCAGAAGCAATGCTATGGATGGGGAACA 60
Query 70 GAGACAGCAGAGGATATGGTTAGAAACGAAGCAGAGCATGCTAAAAACGCAGCCGAGACC 129
||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||
Sbjct 61 GAGACAGCAGAGGATATGGTTAGAAACGAAGCAGAGCATGCTAAAAA--C-G-C-AG-CC 114
Query 130 GCTAAGAAAATGGCGTCCGATGCGGCTCATGACACAAAGGACAAAACCGCCTCTTGGGCT 189
| || | | | ||||||||||||||||| ||||||||||||||||||
Sbjct 115 G---AG---A-------C----C-GCTCATGACACAAAGGAAAAAACCGCCTCTTGGGCT 156
Query 190 GGTTGGGTTTCCGACAAAATTTCCACAGGATTGGGAGGCAAGAAAGCTGAGGCAGAAGAA 249
|| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 157 GGCTGGGTTTCCGACAAAATTTCCACAGGATTGGGAAGCAAGAAAGATGAGGCAGAAGAA 216
Query 250 GCGGCTGAATCTGCGAAGAACTACGCTTATGACAAGGCTGGATCCGCCTATGACAATGCG 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 217 GCGGCTGAATCTGCGAAGAACTACGCTTATGACAAGGCTGGATCCGCCTATGACAATGTG 276
Query 310 GGTTACGCCAAGGACTTTGCATCAGACAAAGCCGGATCTGCTTACGATAGTGCTCATAAC 369
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 277 GGTTACGCCAAGGACTTTGCATCAGACAAAGCTGGATCTGTTTACGATAGTGCTCAAAAC 336
Query 370 GCAAAACATTATGCTTATGATAAGGCTGGTGATGCAAAAGACATGGCCTACGATAAGACC 429
|||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||
Sbjct 337 GCAAAATATTATGCTTATGATAAGGCTGGTGATGCAAAGGACATAGCCTACGGCAAGGCC 396
Query 430 GGTCAAGCCAAGTACATGGCTTACGACAAAGCAGGATCAGCCTACGAAAAGGCCGGTCAA 489
|||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 397 GGTCAAGCTAAGGACATGGCTTACGACAAAGCAGGATCGGCCTATGAAAAGGCCGGTCAA 456
Query 490 GCCAAGGACATGGCCTACGACAAGGCGGGTCAAGCTAAAGACATGGCCTACGACAAGGTG 549
|||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 457 GCCAGGGACATGGCCTACGACAAGGCGGGTCAAGCTAAAGATATGGTCTACGACAAGGTG 516
Query 550 GGATCAGCCTACGACAAGGCGGGTCAAGCCAA-G----G-ACATGGCCTACGACAAAGCA 603
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 517 GGATCAGCCTACGACAAGGCGGGTCAAGCCAAAGCCAAGGACATGGCCTACGACAAAGCA 576
Query 604 GGATCAGCATCTGAGAAGGCTGGTCAAGCCAAAGACTTTGCCTATGACAAGGCAGCTCAC 663
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 577 GGATCAGCCTCTGAGAAGGCTGGTCAAGCCAAAGACTTTGCCTACGACAAGGCAGCTCAT 636
Query 664 GCAAAAGACGCTGCCTATAACAAAGCAGAGGATGTGATTAAGATGGCTACGGATACGAGT 723
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 637 GCAAAAGACGCTGCCTATGACAAAGCAGAGGATGTGATTAAGATGGCTACGGATAAGAGT 696
Query 724 GGTGAAGCTAAAGATAGTGCGTATGGAACATACGAAAGATTCAAAGAAGGATCTAAGAAT 783
|||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 697 GGTGAAGCTAAAGATAATGCGTATGGAACATACAAAAGATTCAAAGAAGGGTCTAATAAT 756
Query 784 GCTAAAGACATTGCATCGGATAAAGCTCACGATGTTAGAGAAACCGCAGGGCGAGCGGTG 843
||||||||||| | ||||||||||||||| |||||||| ||||||||||| |||||| ||
Sbjct 757 GCTAAAGACATGGAATCGGATAAAGCTCAGGATGTTAGCGAAACCGCAGGACGAGCGATG 816
Query 844 GACTATGCTAAAGACAAAGCAAATGATGCATACGAATCGGGGAGCGAAGCAGCCG-GAAG 902
||||| || ||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 817 GACTACGCAAAAGACAAAGCAACTGATGCATACGAATCGGGGAGCGAAGCAGC-GAGAAG 875
Query 903 ATTCGACGAGGCAATGCATAAGGTTGGGGAGAGGTATGGTGCAGCTAAGGATTCTATGTC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 ATTCGACGAGGCAATGCATAAGGTTGGGGAGAGGTATGGTGCAGCTAAGGATTCTATGTC 935
Query 963 GGAGAACACAAAAGAAGCTTATGAGAGTGCAAAGGAGAAGGCTTCTGATGCTGCTGGTGA 1022
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 936 GGAGAAGACAAAAGAAGCTTATGAGAGTGCAAAGGAGAAGGCTTCTGATGCTGCTGGAGA 995
Query 1023 GTACGGTTCATATATGAGAGACCGTAGCGCTGAGCTTTAG 1062
|||||| ||||| | ||||||||||| ||||||||||||
Sbjct 996 GTACGGCACATATGTAAGAGACCGTAGTGCTGAGCTTTAG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5