BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36610.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888403 jgi|Araly1|888403|Al_scaffold_0007_389 1591 0.0
Ahg480744 jgi|Araly1|480744|fgenesh2_kg.3__3445__AT2G18360.1 665 0.0
> Ahg888403 jgi|Araly1|888403|Al_scaffold_0007_389
Length=948
Score = 1591 bits (861), Expect = 0.0
Identities = 912/937 (97%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 41 ATGGTGAACTTTGTTGAGGTACAAAAACCATTGTTGTACGGTCTGATGAAAATGGCTGGC 100
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGTGAACTTTGTTGAGGTACAAAAACCATTGTTATACGGTCTGATGAAAATGGCCGGC 60
Query 101 GTCGTTCCTTACACTTTAGAGATCGAACCAGGGACGAAGATCAACTTTTGGGTCCCTAAG 160
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTCGTTCCTTACACTTTAGAGATTGAACCAGGGACGAAGATAAACTTTTGGGTCCCTAAG 120
Query 161 GAAACCCTAAAGAAGA-ATTCCGGTACCGGAAAACCAACGAAACCCGATAAACCTAAAAA 219
|||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 121 GAAACCCTAAAGAAGAGA-TCCTGTACCGGAAAACCAACTAAACCCGATAAACCTAAAAA 179
Query 220 GCCTGTCGTCTTGTTAATCCATGGTTTCGCTGGCGAAGGAATCGTGACGTGGCAGTTCCA 279
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GCCTGCCGTCTTGTTAATCCATGGTTTCGCCGGCGAAGGAATCGTGACGTGGCAGTTCCA 239
Query 280 AGTCGGTGCATTATCCAAGAAATACTCGGTCTACATACCGGACCTCCTCTTTTTCGGTGG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTCGGTGCATTATCCAAGAAATACTCGGTCTACATACCGGACCTCCTCTTTTTCGGTGG 299
Query 340 ATCCTACACCGACAACTCGGACCGGTCTCCGGCGTTTCAAGCCGACTGTTTGGTCAAGGG 399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCCTACTCCGACAACTCGGACCGGTCTCCGGCGTTTCAAGCCGACTGTTTGGTCAAGGG 359
Query 400 GCTTCGTATCCTCGGCGTGGATAAGTTTGTTCCCGTAGGGTTTAGCTACGGGGGCATGGT 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTTCGTATCCTCGGCGTGGATAAGTTTGTTCCCGTAGGGTTTAGCTACGGGGGCATGGT 419
Query 460 GGCTTTCAAGATCGCTGAAGCTTACCCGGACATGGTTAGAGCAATCGTTGTGTCTGGTTC 519
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTTTCAAGATCGCTGAGGCTTGCCCGGACATGGTTAGAGCAATCGTTGTGTCTGGTTC 479
Query 520 GATTCCCACAATGACCGATACCATTAATGAGGCGAGCTTGAACCGGTTAGGGTTTAGTTC 579
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GATTCCCACGATGACCGATACCATTAATGAGGCGAGCTTGAACCGGTTAGGGTTTACTTC 539
Query 580 TTCCACGGATCTCTTGTTACCGACTTCTGTTACGGGACTTAAGGCTCTCTTCACCATTGC 639
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 540 TTCCACGGATCTCTTGTTACCGACTTCGGTTAAGGGACTTAAGGCTCTCTTCACCATTGC 599
Query 640 TGTGCATAAACCCTTGTGGTTCCCTAAACGATTGTTCAAAGACTACATCGAGGTAATGTT 699
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGCATAAACCCATGTGGTTCCCTAAACGATTGTTCAAAGACTACATCGAGGTAATGTT 659
Query 700 TAACAACAGAAAAGAAAGAGCTGAACTGTTAGAGGCTGTTGTGGTCAGCAACAAGGAAGC 759
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 TAACAACAGGAAAGAAAGAGCTGAACTGTTAGAGGCTGTTGTAGTCAGCAACAAGGAAGC 719
Query 760 GCAAATCCCTCATTTCCCACGGAAAATACATTTCTTGTGGGGTGAAAGTGATCAAATCTT 819
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 GCAAATCCCTCATTTCCCACGGAAAATACATTTCTTATGGGGTGAAAGTGATCAAATCTT 779
Query 820 TGATCTCGAATTGGCTAGAGACATGAAAGAACAAATAGGTGAGAACGCAACAATAGAGAG 879
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 780 TGATCTCGAATTGGCTAGAGACATGAAAGAACAACTAGGTGAGAATGCAACAATAGAGAG 839
Query 880 TATAAAGAAGGCAGGCCATTTGGTACAATTGGAAAGACCTTGTGTTTACAATAGGCGTCT 939
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TATAAAGAAGGCAGGCCATTTGGTACAATTGGAAAGACCTTGTGTTTACAACAGGCGTCT 899
Query 940 CAAAAAGTTTCTTGCATCTATTCACTCGGAAGATAAA 976
||||||||||||||||||||||||||| |||||||||
Sbjct 900 CAAAAAGTTTCTTGCATCTATTCACTCTGAAGATAAA 936
> Ahg480744 jgi|Araly1|480744|fgenesh2_kg.3__3445__AT2G18360.1
Length=1179
Score = 665 bits (360), Expect = 0.0
Identities = 769/963 (80%), Gaps = 41/963 (4%)
Strand=Plus/Plus
Query 38 ACAATGGTGAACTTTGTTGAGGT-ACAAAAACCATTGTTGTACGGTCTGATGAAAAT-GG 95
||||||||||||||||| || | ||||||||||||||||||| |||| ||| |||| ||
Sbjct 134 ACAATGGTGAACTTTGTGGA-TTCACAAAAACCATTGTTGTACCGTCTCATG-AAATGGG 191
Query 96 CTGGCGTCGTTCCTTACACTTTAGAGATCGAACCAGGGACGAAGATCAACTTTTGGGTCC 155
|||| ||| |||| ||||| ||||||| ||||||||||||||||| ||||| ||| |||
Sbjct 192 CTGGTGTCATTCCGTACACCGTAGAGATTGAACCAGGGACGAAGATGAACTTCTGGATCC 251
Query 156 CTAAGGAAACCCTAAAGAAGAATTCC--GGTA-CCG--GAAAAC-C-AAC--GAAACCCG 206
| || |||||||| || || || ||| | | | ||||| | | | |||||
Sbjct 252 CAAAAGAAACCCT-AA-AA-AAGTCCAAAAAATCTGACAAAAACTCTGCCGTGGAACCCC 308
Query 207 ATAAACCTA-AAAAGCCTGTCGTCTTGTTAATCCATGGTTTCGCTGGC-GAAGGAATCGT 264
| ||||||| ||| || ||| ||||||| ||||| || ||||| || ||||| || ||
Sbjct 309 AAAAACCTACCAAA-CCAGTCCTCTTGTTCATCCACGGCTTCGC-AGCTGAAGGGATTGT 366
Query 265 GACGTGGCAGTTCCAAGTCGG-TGCATTATCCAAGAAATACTCGGTCTACATACCGGACC 323
||||||||||||||| ||||| | | ||| ||||||| ||||| ||||| ||||||||||
Sbjct 367 GACGTGGCAGTTCCAGGTCGGAT-CCTTAGCCAAGAAGTACTCAGTCTATATACCGGACC 425
Query 324 TCCTCTT-TTTCGGTGGATCCTACACCGACAACTCGGACCGGTCTCCGGCGTTTCAAGCC 382
||||||| ||| ||||| || ||| |||||||| ||||| |||| || ||||| ||||||
Sbjct 426 TCCTCTTCTTT-GGTGGGTCTTACTCCGACAACCCGGACAGGTCACCAGCGTTCCAAGCC 484
Query 383 GACTGTTTGGTCAAGGGGCTTCGTATCCTCGGCGTGGATAAGTTTGTTCCC-GTAGGGTT 441
||||||| |||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 485 CACTGTTTAGTCAAGTCTCTTCGTATCCTCGGCGTGGATAAGTTTGT-CCTTGTAGGGTT 543
Query 442 TAGCTACGGGGGCATGGTGGCTTTCAAGATCGCTGAAGCTTACCCGGACATGGTT-AGAG 500
||| ||||| |||||||||||||||||||| ||||| | ||||| || |||||| | ||
Sbjct 544 TAGTTACGGTGGCATGGTGGCTTTCAAGATAGCTGAGGAGTACCCTGAGATGGTTCA-AG 602
Query 501 CAATCGTTGTGTCTGGTTCGATTCCCACAATGACCGATACCATTAATGAGGCGAGCTTGA 560
| || || || || |||||||| | | | ||||| ||||| || | |||| | | ||||
Sbjct 603 CCATGGTGGTTTCAGGTTCGATACTCGCGATGACTGATACAATCAGTGAGTCTAATTTGA 662
Query 561 ACCGGTTAGGGTTTA-GTTCTTCCACGGATCTCTTGTTACCGACTTCTGTTACGGGACTT 619
||| ||||||||||| || | || ||||||| |||||||| ||||| |||| |||||
Sbjct 663 ACCAGTTAGGGTTTAAGT-CATCGGCGGATCTTTTGTTACCAACTTCGGTTAAAGGACTC 721
Query 620 AAGGCTCTCTTCACCATTGCTGTGCATAAACCCTTGTGGTTCCCTAAACGATTGTTCAAA 679
||| ||||||| ||| ||||||| ||||||||| |||||||||| || || | |||||
Sbjct 722 AAGACTCTCTTTACCCTTGCTGTTCATAAACCCATGTGGTTCCCGAATCGGCTCTTCAAG 781
Query 680 GACTACATCGAGGTAATGTTTAACAACAGAAAAGAAAGAGCTGAACTGTTAGAGGCTGTT 739
|| | ||| ||||| ||| ||| ||| || || |||||||| ||| |||| || ||| ||
Sbjct 782 GATTTCATTGAGGTGATGATTACCAATAGGAAGGAAAGAGCAGAATTGTTGGAAGCT-TT 840
Query 740 G-TGGTCAGCAACAAGGAAGCG-CAAATCCCTCATTTCCCACGGAAAATACAT-TTCTTG 796
| | |||||||||| || | | | | |||||| ||| | || |||||| ||| |||| |
Sbjct 841 GGTCATCAGCAACAAAGATGTGACCA-TCCCTCGTTTTCAACAGAAAATCCATCTTCT-G 898
Query 797 TGGGGTGAAAGTGATCAAATCTTTGATCTCGAATTGGCTA-GAGACATGAAAGAACAAAT 855
||||| |||||||||||||| ||| | || ||||| || | ||| ||||||||| ||| |
Sbjct 899 TGGGGCGAAAGTGATCAAATTTTTAACCTTGAATTTGCCAAGAG-CATGAAAGAGCAACT 957
Query 856 AGGTGAGAACGCAACAATAGAGAGTATAAAGAAGGCAGGCCATTTGGTACAATTGGAAAG 915
||| || || |||||||| ||||||||||| || ||||| || |||| ||| ||||| ||
Sbjct 958 AGGCGAAAATGCAACAATGGAGAGTATAAAAAAAGCAGGTCACTTGGCACATTTGGAGAG 1017
Query 916 ACCTTGTGTTTACAATAGGCGTCTCAAAAAGTTTCTTGCATCTA-TTCACTCGGAAGA-T 973
||||||||| || || || |||||||||||||||||||| || | || |||| ||| | |
Sbjct 1018 ACCTTGTGTCTATAACAGACGTCTCAAAAAGTTTCTTGCTTC-AGTTTACTCCGAAAACT 1076
Query 974 AAA 976
|||
Sbjct 1077 AAA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5