BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G36620.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490976 jgi|Araly1|490976|fgenesh2_kg.7__409__AT4G36620.1 1038 0.0
> Ahg490976 jgi|Araly1|490976|fgenesh2_kg.7__409__AT4G36620.1
Length=737
Score = 1038 bits (562), Expect = 0.0
Identities = 683/738 (93%), Gaps = 22/738 (3%)
Strand=Plus/Plus
Query 1 ACACAACACACACTTCTC-TT-TCTC-CT-TCTCTCTATATAT-TTTA-ATATCAACTTT 54
|||||||||||||||||| || || | || ||||||||||||| | || |||||||||||
Sbjct 1 ACACAACACACACTTCTCTTTGTCCCTCTCTCTCTCTATATATATATAGATATCAACTTT 60
Query 55 CTAGGGTTTCCAAG-T--T-CA--TA--TATAGTGATGGGTTTCTCAATGTTCTTCTCCC 106
|||||||||||||| | | | || |||||||||||||||||||||||||||||||
Sbjct 61 CTAGGGTTTCCAAGATCATATATCTACGTATAGTGATGGGTTTCTCAATGTTCTTCTCCG 120
Query 107 CCGAAAACGACGTCAG-CCATCATTCCTCTCCATATGCTTCTGTTGACTGCACTCTCTCA 165
|||||||||||||| | |||||| ||||| || |||||||||||||||||||||||||||
Sbjct 121 CCGAAAACGACGTC-GTCCATCACTCCTCCCCTTATGCTTCTGTTGACTGCACTCTCTCA 179
Query 166 CTTGGAACTCCCTCCACTCGCCTCTGCAACGAGGATGATGAACGTAGATTCTCGTCTCAT 225
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 180 CTTGGAACTCCCTCCACTCGCCTCTGCAACGACGATGATGAACGTAGATTCTCTTCTCAT 239
Query 226 ACCTCCGACACCATAGGCTGGGACTTCTTGAACGGTTCCAAGAAAGGCGGTGGAGGCGGC 285
||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 ACCTCCGACGCCTTAGGTTGGGACTTCTTGAACGGTTCCAAGAAAGGCGGTGGAGGTGGC 299
Query 286 GGACATAACCTCCTCGCTCGCCGTTGCGCCAACTGCGACACCACTTCTACTCCTCTTTGG 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGACATAACCTCCTCGCTCGCCGTTGCGCCAACTGCGACACCACTTCTACTCCTCTTTGG 359
Query 346 AGAAACGGTCCAAGAGGTCCCAAGTCGTTGTGTAATGCGTGTGGAATCCGATTCAAGAAA 405
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 AGAAACGGTCCAAGAGGTCCCAAGTCATTGTGTAATGCGTGTGGAATCCGATTCAAGAAA 419
Query 406 GAAGAGAGACGTGCATCGACCGCCAGAAACTCGACCTCCGGCGGAGGATCAACTGCAGCT 465
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||
Sbjct 420 GAAGAGAGACGTGCATCGACCGCCGGAAACTCTACCTCCGGCGGAGGATCAACGGCGGCT 479
Query 466 GGAGTTCCAACTTTGGATCATCAAGCAAGTGCAAATTATTATTATAACAATAATAACCAA 525
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 480 AGAGTTCCAACTTTTGATCATCAAGCAGGAGCAAATTATTATTATAACAATAATAACCAA 539
Query 526 TATGCTTCATCGTCGCCTTGG---CA-C-C-ATCAGCATAATACGCAGAGAGTTCCATAT 579
||||||||||||||||| ||| || | | |||||||||||||||||||| ||||||||
Sbjct 540 TATGCTTCATCGTCGCCCTGGGTTCAACACCATCAGCATAATACGCAGAGAATTCCATAT 599
Query 580 TACTCGCCGGCCAATAACGAATACTCATACGTTGATGATGTCAGAGTTGTTGATCATGAC 639
||||||||||| | |||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 600 TACTCGCCGGCGACTAACGAATACTCATGCGTTGATGACGTCAGAGATGTTGATCATGAC 659
Query 640 GTCACAACCGACCCGTTCTTGTCTTGGAGGCTTAACGTCGCCGACCGGACCGGCCTTGTC 699
||||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 660 GTCACGACCGACCCGTTCTTGTCTTGGAGGCTTAACCTCGCGGACCGGACCAGCCTTGTC 719
Query 700 CACGATTTTACGATGTGA 717
||||||||||||||||||
Sbjct 720 CACGATTTTACGATGTGA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5